mRNA_L-elsbetiae_contig17571.4953.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17571.4953.1
Unique NamemRNA_L-elsbetiae_contig17571.4953.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17571.4953.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.330e-16
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = -2 
Query:    7 AASTPVHATGSDHLVYDRRRPVPHEATLELGEGQVMKVECFGKLDVVLLPMLRPPIRVKVKNMAVVPGLKSNYLSLSVIQMHGGIYMDETGTYALNGKVHFAKLP 321
            +AST VHAT     VY+ R P+  E  L +G+G+ +K ECFG LDVV     R  + V +K++AVVP L  + +SL+VIQ    + ++  GT+ LNG+VHF+KLP
Sbjct:   20 SAST-VHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVF--HCREDVLVTMKDIAVVPDLAFDLVSLNVIQETHDLLLNSAGTWILNGRVHFSKLP 121
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17571.4953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE3.330e-1645.71Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17571contigL-elsbetiae_contig17571:2046..2532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size489
Cds size354
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.7962496-UTR-L-elsbetiae_contig17571:2045..21781622815731.7962496-UTR-L-elsbetiae_contig17571:2045..2178Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17571 2046..2178 +
1691683066.4239333-UTR-L-elsbetiae_contig17571:2045..21781691683066.4239333-UTR-L-elsbetiae_contig17571:2045..2178Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17571 2046..2178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.811149-CDS-L-elsbetiae_contig17571:2178..25321622815731.811149-CDS-L-elsbetiae_contig17571:2178..2532Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17571 2179..2532 +
1691683066.437398-CDS-L-elsbetiae_contig17571:2178..25321691683066.437398-CDS-L-elsbetiae_contig17571:2178..2532Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17571 2179..2532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17571.4953.1prot_L-elsbetiae_contig17571.4953.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17571 2179..2532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17571.4953.1

>prot_L-elsbetiae_contig17571.4953.1 ID=prot_L-elsbetiae_contig17571.4953.1|Name=mRNA_L-elsbetiae_contig17571.4953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MFFTLTRIGGRSMGRSTTSSLPKHSTFITCPSPSSRVASCGTGRRRSYTR
WSEPVACTGVLAATKTDMSSSCMGGRSLDRTSAGVGDASDCKQHASNPPP
PSSGAKPYSTVAPLPAPL
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mRNA from alignment at L-elsbetiae_contig17571:2046..2532+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17571.4953.1 ID=mRNA_L-elsbetiae_contig17571.4953.1|Name=mRNA_L-elsbetiae_contig17571.4953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=487bp|location=Sequence derived from alignment at L-elsbetiae_contig17571:2046..2532+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGGCGGGGAGCTTGGCGAAGTGGACCTTGCCGTTGAGGGCGTATGTGC
CGGTCTCGTCCATGTAAATGCCGCCGTGCATCTGAATGACGCTGAGGGAC
AGATAGTTGGACTTCAGCCCTGGTACCACGGCCATGTTCTTCACCTTGAC
ACGGATAGGAGGGCGAAGCATGGGAAGAAGCACTACATCCAGCTTGCCAA
AGCACTCCACCTTCATCACCTGCCCTTCGCCGAGCTCTAGAGTAGCCTCG
TGTGGTACAGGGCGCCGCCGATCGTACACAAGATGGTCAGAGCCAGTGGC
GTGCACGGGAGTACTGGCAGCGACAAAAACCGACATGTCAAGTAGCTGCA
TGGGCGGGAGGAGTTTGGACAGAACATCAGCGGGGGTAGGAGACGCTTCA
GACTGCAAACAACATGCCAGCAATCCACCACCGCCTTCGTCAGGAGCCAA
GCCGTACTCCACCGTTGCCCCGTTGCCCGCCCCCTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17571:2046..2532+

>mRNA_L-elsbetiae_contig17571.4953.1 ID=mRNA_L-elsbetiae_contig17571.4953.1|Name=mRNA_L-elsbetiae_contig17571.4953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig17571:2046..2532+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCTTCACCTTGACACGGATAGGAGGGCGAAGCATGGGAAGAAGCAC
TACATCCAGCTTGCCAAAGCACTCCACCTTCATCACCTGCCCTTCGCCGA
GCTCTAGAGTAGCCTCGTGTGGTACAGGGCGCCGCCGATCGTACACAAGA
TGGTCAGAGCCAGTGGCGTGCACGGGAGTACTGGCAGCGACAAAAACCGA
CATGTCAAGTAGCTGCATGGGCGGGAGGAGTTTGGACAGAACATCAGCGG
GGGTAGGAGACGCTTCAGACTGCAAACAACATGCCAGCAATCCACCACCG
CCTTCGTCAGGAGCCAAGCCGTACTCCACCGTTGCCCCGTTGCCCGCCCC
CTTGATGTTCTTCACCTTGACACGGATAGGAGGGCGAAGCATGGGAAGAA
GCACTACATCCAGCTTGCCAAAGCACTCCACCTTCATCACCTGCCCTTCG
CCGAGCTCTAGAGTAGCCTCGTGTGGTACAGGGCGCCGCCGATCGTACAC
AAGATGGTCAGAGCCAGTGGCGTGCACGGGAGTACTGGCAGCGACAAAAA
CCGACATGTCAAGTAGCTGCATGGGCGGGAGGAGTTTGGACAGAACATCA
GCGGGGGTAGGAGACGCTTCAGACTGCAAACAACATGCCAGCAATCCACC
ACCGCCTTCGTCAGGAGCCAAGCCGTACTCCACCGTTGCCCCGTTGCCCG
CCCCCTTG
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