mRNA_L-elsbetiae_contig1757.4952.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1757.4952.1
Unique NamemRNA_L-elsbetiae_contig1757.4952.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1757.4952.1 vs. uniprot
Match: D8LFU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFU7_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 2.940e-94
Identity = 188/301 (62.46%), Postives = 209/301 (69.44%), Query Frame = 1 
Query:  457 MIYLDLVASTAQLLPYL----------AGDEAGXXXXXXXXXXXXSTEAGFGAFVVRLVSRLMQSFTGFTAIFFAIEVAMLLAAFRGRFFRHLGYVVDLLVVSACLYQEASGKGKGVRLLGALRVWRVARVMNTLLLSADEAHDETRDTLRMAEKTTQDLEADRRRLQETLRREVEARKRVDRMLRGYKDEVETLNEALKIAAMDIATAGVSPG---MGAGDSNMTLKRS---ADSDTGSST-GSXXXXXXXXSADGAEEDGARARQXXXXXXXXXXXXXSPSGGTANRIFVFQDGTFQAR 1308
            MIYLDLVASTAQLLPY           AGD+ G            S  AGF AFV+RLVSR MQSFTGFT I FAIE+ MLLAAFR +FFRH GY++DL VVS CLYQE SGKGKGVRLLGALRVWRVARVMNTLLLSAD+AH+ TRDTLR+AEK   DL+ DRRRLQETLRRE EARKRVD+MLRGYKDEVETLNEALKIAAMDIA A  S G   +G G+ +    R    A SDTGSS+ GS        S +G ++   +  Q             + S  TAN+IFVFQDGTFQAR
Sbjct:    1 MIYLDLVASTAQLLPYFQAAGAGPGSGAGDKGGAEEVAGT-----SGGAGFAAFVLRLVSRFMQSFTGFTIILFAIEMVMLLAAFREKFFRHAGYILDLFVVSLCLYQEISGKGKGVRLLGALRVWRVARVMNTLLLSADDAHNLTRDTLRLAEK---DLDIDRRRLQETLRREAEARKRVDKMLRGYKDEVETLNEALKIAAMDIAAAAASAGKDTVGGGEEDALHNRGQPPAGSDTGSSSLGSSEGGSIHESVNGLDQTIPQEEQQRRKG--------TSSVPTANKIFVFQDGTFQAR 285
[Close]
BLAST of mRNA_L-elsbetiae_contig1757.4952.1 vs. uniprot
Match: A0A7S2BNW9_9STRA (Voltage-gated hydrogen channel 1 n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNW9_9STRA)

HSP 1 Score: 147 bits (371), Expect = 5.120e-37
Identity = 87/218 (39.91%), Postives = 128/218 (58.72%), Query Frame = 1 
Query:  400 VANLGSFVELYEVQVAVVAMIYLDLVASTAQLLPYLAGDEAGXXXXXXXXXXXXSTEAGFGAFVVRLVSRLMQSFTGFTAIFFAIEVAMLLAAFRGRFFRHLGYVVDLLVVSACLYQEASGKGKGVRLLGALRVWRVARVMNTLLLSADEAHDETRDTLRMAEKTTQDLEADRRRLQETLRREVEARKRVDRMLRGYKDEVETLNEALKIAAMDIATA 1053
            V    SF E +EVQ+  + +I LD+  +   LL       A                +G    V+R++    ++FTGFT  +F +E+  L+ AFR  FF H+G ++DL +V+ CL  E  G+ + +RLLG LR WRV R++NTLL + +    ET+D      +  ++   +  RL++ LRRE++++KRV+ MLR YKDEVETLNEALKIAA+DIA A
Sbjct:   78 VVGAASFFESFEVQLVTLILIALDVALAVTSLLLTCGNAPA---------------SSGLALAVLRVI----ETFTGFTVFYFLLELGALMFAFRSAFFGHIGNILDLAIVATCLVWEVDGRSRAIRLLGVLRFWRVMRLVNTLLTTKETKLQETKDAWDTDLQILEETRVEIARLEDNLRRELDSKKRVETMLRSYKDEVETLNEALKIAALDIAQA 276
[Close]
BLAST of mRNA_L-elsbetiae_contig1757.4952.1 vs. uniprot
Match: A0A835YTE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTE1_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.020e-34
Identity = 78/144 (54.17%), Postives = 98/144 (68.06%), Query Frame = 1 
Query:  631 FTAIFFAIEVAMLLAAFRGRFFRHLGYVVDLLVVSACLYQEASGKGKGVRLLGALRVWRVARVMNTLLLSADEAHDETRDTLRMAEKTTQDLEADRRRLQETLRREVEARKRVDRMLRGYKDEVETLNEALKIAAMDIATAGVS 1062
            FT  FFA+E+ +LLAAFR +F  HLGY++DL +V+ACL++E  G  K +RLLG  R WRV R++NTL+  A E      D    A++   ++EADRRRL E LR E EARK  + ML GYK+E ETL EAL IAAMDIA A  S
Sbjct:    3 FTIFFFALELLVLLAAFRRKFLLHLGYMLDLAIVAACLWRELQGGSKELRLLGYCRGWRVVRLVNTLVEQAQERASRAADREAEAQRRAIEVEADRRRLAEALRLEREARKNTETMLLGYKEEAETLREALNIAAMDIAEAAAS 146
[Close]
BLAST of mRNA_L-elsbetiae_contig1757.4952.1 vs. uniprot
Match: A0A7S2A8Z7_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8Z7_TRICV)

HSP 1 Score: 138 bits (347), Expect = 2.160e-34
Identity = 91/219 (41.55%), Postives = 130/219 (59.36%), Query Frame = 1 
Query:  406 NLGSFVELYEVQVAVVAMIYLDLVASTAQLLPYLAGDEAGXXXXXXXXXXXXSTEAGFGAFVVRLVSRLMQSFTGFTAIFFAIEVAMLLAAFRGRFFRHLGYVVDLLVVSACLYQE-ASGKGKGVRLLGALRVWRVARVMNTLLLSADEAHDETRDTLRMAEKTTQDLEADRRRLQETLRREVEARKRVDRMLRGYKDEVETLNEALKIAAMDIATAGV 1059
            +LG  +E  EVQ+   A+IYLDL+AST +++  L G +A             S            +  L++SFT FT  FF IE+A L+ AF  R F HLGYV D++++  CL  E  S + K +RLLG LR+WR AR+++T L  A + H+ T+  L+ A++  + L A    L+E    E+E RK V++ML+GYK+EVE L EALKIAA D+A A +
Sbjct:    6 SLGRLLEQQEVQLITTALIYLDLIASTFRIV--LQG-KANFTEDENHRPDEGSES----------IHWLIRSFTSFTLFFFMIEIASLIFAFGTRCFWHLGYVADIIIIMLCLSSELTSSESKAIRLLGFLRIWRFARLVSTTLDMAQDQHNATKSCLQEAQQHGEKLRAKVSFLEERNMNEIEHRKEVEKMLQGYKEEVEMLGEALKIAAFDVAGAAI 211
[Close]
BLAST of mRNA_L-elsbetiae_contig1757.4952.1 vs. uniprot
Match: A0A7S2W125_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W125_9STRA)

HSP 1 Score: 138 bits (347), Expect = 7.080e-34
Identity = 92/244 (37.70%), Postives = 141/244 (57.79%), Query Frame = 1 
Query:  322 RNKPQQHPAKTSGLKSGWGGALGIGSVANLGSFVELYEVQVAVVAMIYLDLVASTAQLLPYLAGDEAGXXXXXXXXXXXXSTEAGFGAFVVRLVSRLMQSFTGFTAIFFAIEVAMLLAAFRGRFFRHLGYVVDLLVVSACLYQEASGKGKGVRLLGALRVWRVARVMNTLLLSADEAHDETRDTLRMAEKTTQDLEADRRRLQETLRREVEARKRVDRMLRGYKDEVETLNEALKIAAMDIATA 1053
            R + +QH  +T G      GA         G+F E +++QV  +  I++D+ A+TA  L  L+G+E+             ST A         V  ++QS  GFT  +F +E+A L  AF+ RF  H G +VD+ VV+  +  E  G  + VR+LG LRVWR+ R++NT++ + D+  D  R+  +  +   ++ +    RL++++RRE +A+KRV+ ML+ YKDEVETLNEALKIAA+DIA A
Sbjct:   24 RGQREQHAEETGGRDKD--GAEVESRAQEAGNFFESFDIQVLTLCFIFVDVAAATA--LVALSGEES----------LASSTTAA--------VLNVIQSLMGFTIFYFILELAALAWAFKTRFLTHAGILVDMGVVACAVLAEVQGTSRIVRVLGVLRVWRLMRLINTVMATKDKEIDSIREEWQADQARLEESQITISRLEDSIRREGDAKKRVEDMLKSYKDEVETLNEALKIAALDIAAA 245
[Close]
BLAST of mRNA_L-elsbetiae_contig1757.4952.1 vs. uniprot
Match: A0A6A3LDP9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LDP9_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.350e-32
Identity = 87/216 (40.28%), Postives = 128/216 (59.26%), Query Frame = 1 
Query:  406 NLGSFVELYEVQVAVVAMIYLDLVASTAQLLPYLAGDEAGXXXXXXXXXXXXSTEAGFGAFVVRLVSRLMQSFTGFTAIFFAIEVAMLLAAFRGRFFRHLGYVVDLLVVSACLYQEASGKGKGVRLLGALRVWRVARVMNTLLLSADEAHDETRDTLRMAEKTTQDLEADRRRLQETLRREVEARKRVDRMLRGYKDEVETLNEALKIAAMDIATA 1053
             LG+ +E  EVQ+ +V +I LD+  +  ++  +   D+              S + G G+ +VR+ +RL++SFTGFT   F IE+A+LLAAFR +FF H GYV+D++VV   L  E   + K VRLLG LRVWRV R++  L+     AHD TR  L   +     +   +    E+L+RE E+R  ++++LR YKDE+ TL EAL+IAA  +A A
Sbjct:   74 RLGAVLETTEVQLTMVVLIALDVGCTALEMHLH---DQQQLALALQQLNGGASLDVG-GSVLVRIATRLVESFTGFTLFLFLIELAVLLAAFRRQFFAHAGYVLDMVVVGVSLAMELYAQSKAVRLLGILRVWRVLRLVRRLVDQERAAHDGTRLLLEQEQLKLLHVRMQKDAAHESLKREYESRSGLEQLLRSYKDEIVTLKEALQIAAQAVAEA 285
[Close]
BLAST of mRNA_L-elsbetiae_contig1757.4952.1 vs. uniprot
Match: A0A833SYR8_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SYR8_PHYIN)

HSP 1 Score: 134 bits (336), Expect = 1.680e-31
Identity = 91/237 (38.40%), Postives = 138/237 (58.23%), Query Frame = 1 
Query:  403 ANLGSFVELYEVQVAVVAMIYLDLVASTAQLLPYLAGDEAGXXXXXXXXXXXXSTEAGFGAFVVRLVSRLMQSFTGFTAIFFAIEVAMLLAAFRGRFFRHLGYVVDLLVVSACLYQEASGKGKGVRLLGALRVWRVARVMNTLLLSADEAHDETRDTLRMAEKTTQDLEADRRRLQETLRREVEARKRVDRMLRGYKDEVETLNEALKIAAMDIATAGVSPGMGAGDSNMTLKRSAD 1113
            + LG+ +E  E QV ++ +I LD++++  ++  +L   +              STE      + R+V+RL++SFTGFT   F IE+A+LLAA R +FF H GYV+DL VVS  +  E   + K VRLLG LRVWRV R++  L+     AHD TR  L   +     +   +   QE L+ E E+R  ++++LR YKDE+ TL EAL+IAA  +A A ++    A ++++ L R+AD
Sbjct:   76 SRLGAILETTEAQVIMILLIALDIISTAVEI--HLHDQQQLHQLNSKRATADASTEV-IAPRLARVVTRLVESFTGFTLFLFLIELAVLLAALRRKFFAHAGYVLDLAVVSVSVTVELYAQTKAVRLLGILRVWRVLRLVRHLVDQERAAHDATRQLLEQEQLKLLHVRMQKEAAQECLKCEYESRAGLEQLLRVYKDEIVTLKEALQIAAQAVAEATMAESSDA-ENSLGLYRAAD 308
[Close]
BLAST of mRNA_L-elsbetiae_contig1757.4952.1 vs. uniprot
Match: A0A2P4YCG1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YCG1_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.180e-31
Identity = 76/155 (49.03%), Postives = 102/155 (65.81%), Query Frame = 1 
Query:  589 VVRLVSRLMQSFTGFTAIFFAIEVAMLLAAFRGRFFRHLGYVVDLLVVSACLYQEASGKGKGVRLLGALRVWRVARVMNTLLLSADEAHDETRDTLRMAEKTTQDLEADRRRLQETLRREVEARKRVDRMLRGYKDEVETLNEALKIAAMDIATA 1053
            +VR+ +RL++SFTGFT   F IE+ +LLAAFR +FF H GYVVDL+VVS  L  E   + K  RLLG LRVWRV R++  LL     AHD TR  L   +     +   +    E+L+RE E+R+ ++++LRGYKDE+ TL EAL+IAA  +A A
Sbjct:   48 LVRVATRLVESFTGFTLFLFLIELVILLAAFRHKFFAHAGYVVDLVVVSLSLAVELYAQTKVARLLGILRVWRVLRLVGKLLDQERAAHDTTRLLLEQEQLKLLHVRMQKDAAHESLKREYESREGIEQLLRGYKDEIVTLKEALQIAAQAVAEA 202
[Close]
BLAST of mRNA_L-elsbetiae_contig1757.4952.1 vs. uniprot
Match: A0A329SGB6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SGB6_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.200e-30
Identity = 86/216 (39.81%), Postives = 125/216 (57.87%), Query Frame = 1 
Query:  406 NLGSFVELYEVQVAVVAMIYLDLVASTAQLLPYLAGDEAGXXXXXXXXXXXXSTEAGFGAFVVRLVSRLMQSFTGFTAIFFAIEVAMLLAAFRGRFFRHLGYVVDLLVVSACLYQEASGKGKGVRLLGALRVWRVARVMNTLLLSADEAHDETRDTLRMAEKTTQDLEADRRRLQETLRREVEARKRVDRMLRGYKDEVETLNEALKIAAMDIATA 1053
             LG+ +E  E QV ++ +I LD+  +   +  +L   +              STE    + +VR+++RL++SFTGFT   F IE+A+LLAAFR +FF H GYV+DL VVS  L  E   + K  RLLG LRVWRV R++  ++     AHD TR  L   +     +   +    E+L+RE E+R  ++++LR YKDE+ TL EAL+IAA  +A A
Sbjct:   76 RLGAILETTEAQVVMILLIALDIGCTAVGI--HLHNQQQ---LNTRSTPADASTEV-VTSLLVRVITRLVESFTGFTLFLFLIELAVLLAAFRHKFFAHAGYVLDLTVVSVSLAVELYAQTKVARLLGILRVWRVLRLVRRIVDQERAAHDTTRQLLEQEQLKLLHVRMQKDAAHESLKREYESRAGLEQLLRSYKDEIVTLKEALQIAAQAVAAA 285
[Close]
BLAST of mRNA_L-elsbetiae_contig1757.4952.1 vs. uniprot
Match: A0A3F2RQZ6_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQZ6_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.380e-30
Identity = 83/222 (37.39%), Postives = 126/222 (56.76%), Query Frame = 1 
Query:  406 NLGSFVELYEVQVAVVAMIYLDLVASTAQLLPYLAGDEAGXXXXXXXXXXXXSTEAGFG-AFVVRLVSRLMQSFTGFTAIFFAIEVAMLLAAFRGRFFRHLGYVVDLLVVSACLYQEASGKGKGVRLLGALRVWRVARVMNTLLLSADEAHDETRDTLRMAEKTTQDLEADRRRLQETLRREVEARKRVDRMLRGYKDEVETLNEALKIAAMDIATAGVSPG 1068
             LG+ +E  E Q+  + +I LD+  +  ++  +     A             +  +    + ++R+ +RL++SF GFT   F IE+A+LLAAFR +FF H GYV+DL+VVS  L  E   + K VRLLG LR+WRV R++  L+     AHD T   L   +     +   +   QE+L+RE E+R+ ++++LR YKDE+ TL EAL+IAA  +A A V  G
Sbjct:   98 TLGAILETTEAQMVTILLIALDVCCTAVEMHLHNQQHLAVVLQQLNSVGKTGAASSSVAESLLMRIATRLVESFMGFTLFLFLIELAVLLAAFRQKFFAHAGYVLDLMVVSVSLTVELYAQTKAVRLLGVLRIWRVLRMVRRLIDRERRAHDATHLLLEQEQVRLIHVRMQKNASQESLKREYESREGLEQLLRSYKDEIMTLKEALQIAAQAVAKATVDKG 319
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1757.4952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFU7_ECTSI2.940e-9462.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2BNW9_9STRA5.120e-3739.91Voltage-gated hydrogen channel 1 n=2 Tax=Florencie... [more]
A0A835YTE1_9STRA1.020e-3454.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2A8Z7_TRICV2.160e-3441.55Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
A0A7S2W125_9STRA7.080e-3437.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6A3LDP9_9STRA2.350e-3240.28Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A833SYR8_PHYIN1.680e-3138.40Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A2P4YCG1_9STRA3.180e-3149.03Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A329SGB6_9STRA1.200e-3039.81Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A3F2RQZ6_9STRA2.380e-3037.39Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1757contigL-elsbetiae_contig1757:16477..20286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score296.6
Seed ortholog evalue1.9e-77
Seed eggNOG ortholog2880.D8LFU7
Hectar predicted targeting categoryother localisation
EggNOG OGs2CNTP@1,2S41M@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionVoltage-dependent channel, four helix bundle domain
Ec32 orthologEc-05_005470.1
Exons6
Model size1311
Cds size1311
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1757.4952.1prot_L-elsbetiae_contig1757.4952.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1757 16477..20286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.69439-CDS-L-elsbetiae_contig1757:16476..167911622815731.69439-CDS-L-elsbetiae_contig1757:16476..16791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 16477..16791 +
1691683066.3243356-CDS-L-elsbetiae_contig1757:16476..167911691683066.3243356-CDS-L-elsbetiae_contig1757:16476..16791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 16477..16791 +
1622815731.708952-CDS-L-elsbetiae_contig1757:17972..182751622815731.708952-CDS-L-elsbetiae_contig1757:17972..18275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 17973..18275 +
1691683066.3387682-CDS-L-elsbetiae_contig1757:17972..182751691683066.3387682-CDS-L-elsbetiae_contig1757:17972..18275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 17973..18275 +
1622815731.7223346-CDS-L-elsbetiae_contig1757:18514..186681622815731.7223346-CDS-L-elsbetiae_contig1757:18514..18668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 18515..18668 +
1691683066.3490965-CDS-L-elsbetiae_contig1757:18514..186681691683066.3490965-CDS-L-elsbetiae_contig1757:18514..18668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 18515..18668 +
1622815731.733261-CDS-L-elsbetiae_contig1757:18874..189931622815731.733261-CDS-L-elsbetiae_contig1757:18874..18993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 18875..18993 +
1691683066.3587456-CDS-L-elsbetiae_contig1757:18874..189931691683066.3587456-CDS-L-elsbetiae_contig1757:18874..18993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 18875..18993 +
1622815731.744325-CDS-L-elsbetiae_contig1757:19217..193251622815731.744325-CDS-L-elsbetiae_contig1757:19217..19325Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 19218..19325 +
1691683066.3693714-CDS-L-elsbetiae_contig1757:19217..193251691683066.3693714-CDS-L-elsbetiae_contig1757:19217..19325Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 19218..19325 +
1622815731.7557373-CDS-L-elsbetiae_contig1757:19974..202861622815731.7557373-CDS-L-elsbetiae_contig1757:19974..20286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 19975..20286 +
1691683066.380468-CDS-L-elsbetiae_contig1757:19974..202861691683066.380468-CDS-L-elsbetiae_contig1757:19974..20286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 19975..20286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1757.4952.1

>prot_L-elsbetiae_contig1757.4952.1 ID=prot_L-elsbetiae_contig1757.4952.1|Name=mRNA_L-elsbetiae_contig1757.4952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=437bp
MVSLTFDEFHAIRSRQRATAEAEASAVASPKTSSNHAPSSSFARDTPAGS
KTAAAVGVATAAKRSSSKIARGVPEPSSSAAASPAAPRGRSNDASESEVA
PTSGSVIRNKPQQHPAKTSGLKSGWGGALGIGSVANLGSFVELYEVQVAV
VAMIYLDLVASTAQLLPYLAGDEAGGGAGGGEGGAVGSTEAGFGAFVVRL
VSRLMQSFTGFTAIFFAIEVAMLLAAFRGRFFRHLGYVVDLLVVSACLYQ
EASGKGKGVRLLGALRVWRVARVMNTLLLSADEAHDETRDTLRMAEKTTQ
DLEADRRRLQETLRREVEARKRVDRMLRGYKDEVETLNEALKIAAMDIAT
AGVSPGMGAGDSNMTLKRSADSDTGSSTGSSESGGSRGSADGAEEDGARA
RQQQQQQQQQQQQQQSPSGGTANRIFVFQDGTFQAR*
back to top

mRNA from alignment at L-elsbetiae_contig1757:16477..20286+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1757.4952.1 ID=mRNA_L-elsbetiae_contig1757.4952.1|Name=mRNA_L-elsbetiae_contig1757.4952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3810bp|location=Sequence derived from alignment at L-elsbetiae_contig1757:16477..20286+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGTCCCTAACTTTCGACGAGTTTCATGCCATACGAAGCCGGCAGCG
CGCCACGGCCGAGGCCGAGGCATCCGCGGTGGCTTCCCCCAAAACCTCTA
GCAATCATGCGCCGAGTAGTTCCTTTGCGAGGGACACGCCGGCGGGTTCG
AAGACAGCTGCGGCCGTGGGGGTGGCGACGGCAGCGAAGCGAAGCAGCTC
AAAAATAGCAAGAGGTGTACCTGAACCCTCTTCCTCCGCTGCAGCTTCGC
CTGCTGCTCCTCGTGGTCGGAGCAATGATGCGAGTGAGAGCGAGGTAGCC
CCGACATCAGGATCGGTGAGTGCGTTAGGGGCTTTCTTTCCATCCGCCAG
GACCTACACATTTTTGCTGTATCTCCTACCCGACGACTGGTGTCGCGTCC
AGTTAATAGCGCTGTGAACATGGTACTCGGTAGACTACATAAAAATCTTA
TCTAGTCTAGATATCTACAGTAGAGACGACGCGATAGACGGCACAGTTTA
TCTAGCTAGTAGACTAGTAGTTGGCGCCCGCTGACAAGAAACGTAAAATA
TGGATGGAGGCATGGAGGGCTTAGTTTCCTATTTCCGCCCGAAAAGCTAG
CCTACATGGCCGGTTTTCTTGACGATGGACAACATGCTTGAATTTCCGGG
AATAGACTGCTGGGTCTGATTTCTTCTTTGACATCAGTACATTAGTCGTA
CATAGCCGTGCCGCTGAAACCCAGGCGGGCTGTACGAGAAATCACCCCGC
CGCACCGCACCACACTAAACCTGCACACTCAGGAGGGGCAGGGGTAGGTA
CACACACCAGGGGACGTTTCTTATTTTATACATTCTCTCGAATACACTCA
GTGTCTTGTATCTTGGGGGTGTGTCCAAAGCTCAGTTTCTTATTGGAACG
TTTCTATTGTTGTGGCCCACAGAGCTTTATTTCTGAGCTCAATTTTCTTA
GTTTTCGCGGAAATCTGAGCCTATGATTCATACATAAAAACGGTCTGAGC
AGCGGGCGCCATCTGTATCTAGTCTAGAAGACTAGATTAGATACATACTT
CGATGTAAAAATAGCATGGGAATGAGATGCTTTTTCTCCTGGTGACAGCC
CCCCCCCTGGTGCTCGAGACTGAACGACAAAGAGTCATTTTTTTTACACC
AGGTGATGTATTTACGCTACTGTACGTGAAAACCTATACCTATCTCAGTT
TTCACGAGAGAGATATTTTTGTAGGCTACAGTATGTATGTCGCAGCAGGC
TGCGCTGCCAAAACAGTCTACATAGATAGCATAGTCTATATGTTTGTGTA
CACTTTGTAGAGCCGTAGGTCCCGCCGCTTACGCCTGTTTCTGAACATCG
GTCTACATTATTGTTCGGGTATTTTCATGGGGAATGTATCTAGCAGGCCA
ACAAAGTACGTATTGTGTTATTGCGACAACAGCGCGGAGAGCGGTTCGAT
CAGGTCGACGAAATAACCTTTCTCTGCCGCTTTCAACTACAAACAGGTCA
TCCGCAATAAGCCGCAGCAACACCCAGCGAAAACATCGGGGTTGAAGTCG
GGGTGGGGCGGAGCGCTGGGAATAGGTAGCGTGGCGAATCTGGGAAGCTT
CGTCGAGCTGTACGAGGTGCAGGTGGCTGTGGTGGCGATGATCTACCTGG
ACCTGGTCGCCAGCACCGCGCAGCTGCTGCCCTATTTGGCCGGGGACGAG
GCCGGGGGGGGGGCAGGGGGCGGAGAAGGAGGGGCGGTGGGCTCGACCGA
AGCTGGGTTCGGCGCTTTTGTAGTTCGTCTCGTGTCACGACTCATGCAGG
TGACACTTGGTGGCCCTTCGACTTCGGCCGTTTCGTCTAAACTGGTTGCT
ACGGCCGACCGCAGAAAACGGAGAACCCGTAATGCCTTTTGAACTTGGGG
AGGTAATTTTCGAGGCTCTCCTGCATCACGAACGAAACTGGTTCTCTGTC
ACGCGTAAATATGACACTCCACCGTTTCAACCCTTTCAGCGAGCGACGCA
TCTTGTTTCTCCCTGTTTTCGAAAACATGTTGCCACAGTCCTTCACGGGG
TTCACCGCCATTTTTTTCGCGATAGAGGTTGCCATGCTGCTGGCCGCTTT
TCGCGGGAGGTTCTTCCGGCACCTGGGCTACGTTGTCGATCTTTTGGTGG
TCTCGGCGTGCCTCTACCAAGAGGCGTCCGGCAAAGGAAAAGGTCAGAGT
TTGCAGAGATTTCCTGTGTACCCAATGGTTGGTGTGCTTTGATATTTGGG
GGGGGTGGCAGTCCATGAGTCTGCCAATCCACAGCGTACATACATGTCGC
ACAGATCCTGCGTTTTCTGTATATTTAGGCTGTCGGGTGCGTTTTCTCCG
CCTCTGAGACGAAGGCGCGTTTCTTGCCTCTTTCGCCCGATACCCCAGGC
GTGCGGCTGCTCGGCGCTCTCCGCGTGTGGCGCGTGGCAAGGGTGATGAA
CACGCTCCTGTTGTCGGCGGATGAGGCTCACGACGAAACCCGAGACACCC
TCCGCATGGCAGAAAAGGTTCGGAACTACATACATACCTACGCGATACAT
TCTAGTGAAATGTTTTGTCCACCCATGATTTTTCTGGTCTTCCATCGCGT
CGGTCTACCTGGCACGAGATTTGGCGACTTGATGGCATTCGTTCCCAGAA
TTTCTGCAAAATTCTTTGAGGTTCTAGGCCCCGTCGATGAAAAGGCACAG
CTCCAACTCTACCGTAACTGCCCCCCGTCGTATACGTGCAGACTACGCAG
GATCTCGAGGCAGACCGGCGGCGCTTGCAAGAAACGCTGAGACGAGAGGT
CGAGGCTCGAAAGAGGGTGGACCGGATGCTGAGGGGGTATAAGGACGAGG
TGAGTGGTGAAAGACGCACCACGACATTGCCGGTCTGCAACTGAAAGCAA
GCACCGGCAAACCAAAATTATAAACGCCACACTCATGACGCCCGCAACGC
GACAACGCAGACACCTATCTTAGCTACGGGAGATGCATACTTCGATTCAG
CGTGGGTAGTTGCTGGAGGAGGTGTACGGGTGAGCAGCGCCGTATTAAAC
ACGACTCCTAGATACAGCCCATGCCTTGCAACGCCCCCATTCTCTCCCCC
AACCGCTCTCCCTCTCTCCCTCTCGTTGCCTGCAGACGTAAACCACAACG
CCTGCTTCCCGCTGACAAACAAAACGAGATCCTCCATTCTAACAATCACG
GGGACTGCCTCCACCCAACGAACATTTGAACTGAAATTTACTTCGTAGGC
AACATCTTTTGATAAGAACGTGCATTTCAAATTTATTAAGGGCACGGTAG
TAGAAAGCACAACCTTTAAAGCAGTCGAAAGTGTGTATACTATTCGAGTT
TAGACAAGTTTCGGCGTCGGAGCTAATGTAACCACAGTTAAGAGTGTTTT
CGTTTTTTAAAAGAGACGAAACAATTGCCAATAATGAATCCTCTCTCGTT
ACACTTTCCTCTCGGTACGCGCGCTTCAAAACAAATCCTGAACCGAAGGT
GGAGACCCTGAACGAGGCCCTAAAAATCGCCGCCATGGACATTGCCACGG
CCGGAGTGTCGCCGGGCATGGGCGCGGGCGACAGCAACATGACGCTGAAA
CGCAGCGCGGATTCGGACACCGGGAGCAGCACGGGCAGCAGCGAAAGCGG
GGGTAGCCGAGGGTCGGCCGATGGTGCGGAGGAAGACGGAGCGCGGGCGC
GACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCTCCC
TCTGGCGGAACTGCTAATCGAATCTTTGTGTTTCAGGATGGGACGTTTCA
GGCTCGGTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1757:16477..20286+

>mRNA_L-elsbetiae_contig1757.4952.1 ID=mRNA_L-elsbetiae_contig1757.4952.1|Name=mRNA_L-elsbetiae_contig1757.4952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2622bp|location=Sequence derived from alignment at L-elsbetiae_contig1757:16477..20286+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGTCCCTAACTTTCGACGAGTTTCATGCCATACGAAGCCGGCAGCG
CGCCACGGCCGAGGCCGAGGCATCCGCGGTGGCTTCCCCCAAAACCTCTA
GCAATCATGCGCCGAGTAGTTCCTTTGCGAGGGACACGCCGGCGGGTTCG
AAGACAGCTGCGGCCGTGGGGGTGGCGACGGCAGCGAAGCGAAGCAGCTC
AAAAATAGCAAGAGGTGTACCTGAACCCTCTTCCTCCGCTGCAGCTTCGC
CTGCTGCTCCTCGTGGTCGGAGCAATGATGCGAGTGAGAGCGAGGTAGCC
CCGACATCAGGATCGATGGTGTCCCTAACTTTCGACGAGTTTCATGCCAT
ACGAAGCCGGCAGCGCGCCACGGCCGAGGCCGAGGCATCCGCGGTGGCTT
CCCCCAAAACCTCTAGCAATCATGCGCCGAGTAGTTCCTTTGCGAGGGAC
ACGCCGGCGGGTTCGAAGACAGCTGCGGCCGTGGGGGTGGCGACGGCAGC
GAAGCGAAGCAGCTCAAAAATAGCAAGAGGTGTACCTGAACCCTCTTCCT
CCGCTGCAGCTTCGCCTGCTGCTCCTCGTGGTCGGAGCAATGATGCGAGT
GAGAGCGAGGTAGCCCCGACATCAGGATCGGTCATCCGCAATAAGCCGCA
GCAACACCCAGCGAAAACATCGGGGTTGAAGTCGGGGTGGGGCGGAGCGC
TGGGAATAGGTAGCGTGGCGAATCTGGGAAGCTTCGTCGAGCTGTACGAG
GTGCAGGTGGCTGTGGTGGCGATGATCTACCTGGACCTGGTCGCCAGCAC
CGCGCAGCTGCTGCCCTATTTGGCCGGGGACGAGGCCGGGGGGGGGGCAG
GGGGCGGAGAAGGAGGGGCGGTGGGCTCGACCGAAGCTGGGTTCGGCGCT
TTTGTAGTTCGTCTCGTGTCACGACTCATGCAGGTCATCCGCAATAAGCC
GCAGCAACACCCAGCGAAAACATCGGGGTTGAAGTCGGGGTGGGGCGGAG
CGCTGGGAATAGGTAGCGTGGCGAATCTGGGAAGCTTCGTCGAGCTGTAC
GAGGTGCAGGTGGCTGTGGTGGCGATGATCTACCTGGACCTGGTCGCCAG
CACCGCGCAGCTGCTGCCCTATTTGGCCGGGGACGAGGCCGGGGGGGGGG
CAGGGGGCGGAGAAGGAGGGGCGGTGGGCTCGACCGAAGCTGGGTTCGGC
GCTTTTGTAGTTCGTCTCGTGTCACGACTCATGCAGTCCTTCACGGGGTT
CACCGCCATTTTTTTCGCGATAGAGGTTGCCATGCTGCTGGCCGCTTTTC
GCGGGAGGTTCTTCCGGCACCTGGGCTACGTTGTCGATCTTTTGGTGGTC
TCGGCGTGCCTCTACCAAGAGGCGTCCGGCAAAGGAAAAGTCCTTCACGG
GGTTCACCGCCATTTTTTTCGCGATAGAGGTTGCCATGCTGCTGGCCGCT
TTTCGCGGGAGGTTCTTCCGGCACCTGGGCTACGTTGTCGATCTTTTGGT
GGTCTCGGCGTGCCTCTACCAAGAGGCGTCCGGCAAAGGAAAAGGCGTGC
GGCTGCTCGGCGCTCTCCGCGTGTGGCGCGTGGCAAGGGTGATGAACACG
CTCCTGTTGTCGGCGGATGAGGCTCACGACGAAACCCGAGACACCCTCCG
CATGGCAGAAAAGGCGTGCGGCTGCTCGGCGCTCTCCGCGTGTGGCGCGT
GGCAAGGGTGATGAACACGCTCCTGTTGTCGGCGGATGAGGCTCACGACG
AAACCCGAGACACCCTCCGCATGGCAGAAAAGACTACGCAGGATCTCGAG
GCAGACCGGCGGCGCTTGCAAGAAACGCTGAGACGAGAGGTCGAGGCTCG
AAAGAGGGTGGACCGGATGCTGAGGGGGTATAAGGACGAGACTACGCAGG
ATCTCGAGGCAGACCGGCGGCGCTTGCAAGAAACGCTGAGACGAGAGGTC
GAGGCTCGAAAGAGGGTGGACCGGATGCTGAGGGGGTATAAGGACGAGGT
GGAGACCCTGAACGAGGCCCTAAAAATCGCCGCCATGGACATTGCCACGG
CCGGAGTGTCGCCGGGCATGGGCGCGGGCGACAGCAACATGACGCTGAAA
CGCAGCGCGGATTCGGACACCGGGAGCAGCACGGGCAGCAGCGAAAGCGG
GGGTAGCCGAGGGTCGGCCGATGGTGCGGAGGAAGACGGAGCGCGGGCGC
GACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCTCCC
TCTGGCGGAACTGCTAATCGAATCTTTGTGTTTCAGGATGGGACGTTTCA
GGCTCGGTAAGTGGAGACCCTGAACGAGGCCCTAAAAATCGCCGCCATGG
ACATTGCCACGGCCGGAGTGTCGCCGGGCATGGGCGCGGGCGACAGCAAC
ATGACGCTGAAACGCAGCGCGGATTCGGACACCGGGAGCAGCACGGGCAG
CAGCGAAAGCGGGGGTAGCCGAGGGTCGGCCGATGGTGCGGAGGAAGACG
GAGCGCGGGCGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTCTCCCTCTGGCGGAACTGCTAATCGAATCTTTGTGTTTCAGGA
TGGGACGTTTCAGGCTCGGTAA
back to top