mRNA_L-elsbetiae_contig17430.4896.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17430.4896.1
Unique NamemRNA_L-elsbetiae_contig17430.4896.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig17430.4896.1 vs. uniprot
Match: D7FKW2_ECTSI (Sld5 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKW2_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 2.590e-36
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 2 
Query:  257 QGLNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENEST 463
            QGLNLDLTADLQPPKELHVEVRVL+DCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENEST
Sbjct:  126 QGLNLDLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENEST 194
[Close]
BLAST of mRNA_L-elsbetiae_contig17430.4896.1 vs. uniprot
Match: A0A7S2CTQ8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTQ8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 7.360e-19
Identity = 42/62 (67.74%), Postives = 54/62 (87.10%), Query Frame = 2 
Query:  263 LNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQEL 448
            + +D+T+D+ PPKEL VE+RVL +CGEIMT+ GSV L++GTTHLLRRSDVE LVRQG L+E+
Sbjct:   93 VGVDVTSDMMPPKELMVEIRVLAECGEIMTETGSVNLEKGTTHLLRRSDVESLVRQGYLEEI 154
[Close]
BLAST of mRNA_L-elsbetiae_contig17430.4896.1 vs. uniprot
Match: A0A7S2RC62_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RC62_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 8.030e-19
Identity = 39/62 (62.90%), Postives = 54/62 (87.10%), Query Frame = 2 
Query:  263 LNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQEL 448
            +++DLT+D+QPPK L +EVRVL DCGE++TD GS+ L + TTH LRRSDVEHL+RQG+L+++
Sbjct:  142 VDVDLTSDMQPPKNLFIEVRVLEDCGEVLTDSGSINLAKNTTHYLRRSDVEHLIRQGMLKQI 203
[Close]
BLAST of mRNA_L-elsbetiae_contig17430.4896.1 vs. uniprot
Match: A0A662WFA8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WFA8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.410e-18
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = 2 
Query:  269 LDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQEL 448
            LDL+ADL+PPK+L+VEVRVL DCGE+MT+ G V LD  +TH LRR DVE L+RQGLL+++
Sbjct:   20 LDLSADLKPPKDLYVEVRVLRDCGEVMTESGLVNLDAHSTHFLRRVDVEQLIRQGLLEQI 79
[Close]
BLAST of mRNA_L-elsbetiae_contig17430.4896.1 vs. uniprot
Match: A0A7S2XZV1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZV1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.310e-18
Identity = 37/67 (55.22%), Postives = 56/67 (83.58%), Query Frame = 2 
Query:  257 QGLNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENE 457
            +G+ +DLT D QPPKEL +EVR L DCGEIMT+ G++ L++G+THLLRR D E+L++QG+L+++ ++
Sbjct:  128 EGVGIDLTQDQQPPKELFIEVRALEDCGEIMTEQGTINLEKGSTHLLRRCDAENLIKQGMLEQISDD 194
[Close]
BLAST of mRNA_L-elsbetiae_contig17430.4896.1 vs. uniprot
Match: A0A024GDF6_9STRA (Sld5 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GDF6_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.630e-17
Identity = 49/105 (46.67%), Postives = 63/105 (60.00%), Query Frame = 2 
Query:  137 DLSRRILSLPPIKVFCVCTCHRYKSETSQ*PGCVRALSPWQGLNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELE 451
            D  R+ LSL  ++ F     H Y  + S              L+LD+T DL PPK L++EVRVL+DCGE+MT+ G V L+  +TH LRR D E L+RQGLLQ LE
Sbjct:  102 DAMRKSLSLAEMQFF-----HAYDQQLSD---------YMTDLDLDVTTDLAPPKNLYIEVRVLHDCGELMTESGVVNLEANSTHFLRRFDAEPLIRQGLLQHLE 192
[Close]
BLAST of mRNA_L-elsbetiae_contig17430.4896.1 vs. uniprot
Match: A0A7S0ZFZ1_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFZ1_9RHOD)

HSP 1 Score: 85.5 bits (210), Expect = 3.900e-17
Identity = 36/63 (57.14%), Postives = 52/63 (82.54%), Query Frame = 2 
Query:  263 LNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELE 451
            + LDL A++QPP++L +EVRVL DCGEI+TD G+  L +GT+H L+R+DVEHL+RQG L+ ++
Sbjct:   46 VELDLIAEIQPPEDLFIEVRVLRDCGEILTDDGATNLKKGTSHFLKRTDVEHLIRQGSLKHID 108
[Close]
BLAST of mRNA_L-elsbetiae_contig17430.4896.1 vs. uniprot
Match: A0A7S3EJC6_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJC6_9RHOD)

HSP 1 Score: 87.8 bits (216), Expect = 3.970e-17
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 2 
Query:  257 QGLNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQ 442
            + + LDLTA+LQPPK+L++EVRVL DCG I+TD G+V L  GT H L R DVEHLVRQG L+
Sbjct:  125 ESVGLDLTAELQPPKDLYIEVRVLKDCGSILTDSGTVNLKSGTAHFLPRVDVEHLVRQGALE 186
[Close]
BLAST of mRNA_L-elsbetiae_contig17430.4896.1 vs. uniprot
Match: A0A7S1C9Q6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9Q6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.960e-17
Identity = 39/66 (59.09%), Postives = 54/66 (81.82%), Query Frame = 2 
Query:  263 LNLDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENES 460
            + +D+TADL+PPK+L VEV+VL DCGEI TD G V LD+ + H LRRSDVEHL+RQG++++ + E+
Sbjct:  133 VKIDITADLEPPKDLLVEVQVLKDCGEIWTDSGPVTLDKHSRHFLRRSDVEHLIRQGMVRQTDTEA 198
[Close]
BLAST of mRNA_L-elsbetiae_contig17430.4896.1 vs. uniprot
Match: M4B5A2_HYAAE (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=M4B5A2_HYAAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.140e-17
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 2 
Query:  269 LDLTADLQPPKELHVEVRVLNDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQEL 448
            LDL+ADL+PPK+L+VEVRVL DCGE+MT+ G V LD  + H LRR DVE L+RQGLL+++
Sbjct:   47 LDLSADLKPPKDLYVEVRVLRDCGEVMTESGLVNLDAHSHHFLRRVDVEQLIRQGLLEQI 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17430.4896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKW2_ECTSI2.590e-3698.55Sld5 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2CTQ8_9STRA7.360e-1967.74Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RC62_9STRA8.030e-1962.90Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A662WFA8_9STRA2.410e-1866.67Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S2XZV1_9STRA3.310e-1855.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A024GDF6_9STRA1.630e-1746.67Sld5 domain-containing protein n=1 Tax=Albugo cand... [more]
A0A7S0ZFZ1_9RHOD3.900e-1757.14Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S3EJC6_9RHOD3.970e-1764.52Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S1C9Q6_9STRA4.960e-1759.09Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
M4B5A2_HYAAE5.140e-1765.00Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17430contigL-elsbetiae_contig17430:1491..2625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog2880.D7FKW2
Preferred nameGINS1
KEGG koko:K03232,ko:K10732
KEGG ModuleM00286
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000727,GO:0000811,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0003674,GO:0003678,GO:0003774,GO:0003777,GO:0003824,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005856,GO:0005871,GO:0005875,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0008574,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010564,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022607,GO:0022616,GO:0031261,GO:0031298,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0040007,GO:0042623,GO:0043009,GO:0043138,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0045787,GO:0045931,GO:0046483,GO:0048285,GO:0048518,GO:0048522,GO:0048589,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051225,GO:0051276,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0070925,GO:0071103,GO:0071162,GO:0071704,GO:0071840,GO:0090068,GO:0090304,GO:0090307,GO:0140014,GO:0140097,GO:1900087,GO:1901360,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902292,GO:1902296,GO:1902315,GO:1902319,GO:1902806,GO:1902808,GO:1902850,GO:1902969,GO:1902975,GO:1902983,GO:1903047,GO:1990939,GO:2000045
EggNOG free text desc.DNA strand elongation involved in nuclear cell cycle DNA replication
EggNOG OGsCOG5230@1,KOG3303@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko03012,ko03032
Exons2
Model size959
Cds size120
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17430.4896.1prot_L-elsbetiae_contig17430.4896.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17430 1984..2279 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.5657942-UTR-L-elsbetiae_contig17430:1490..19831622815726.5657942-UTR-L-elsbetiae_contig17430:1490..1983Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17430 1491..1983 -
1691683062.896913-UTR-L-elsbetiae_contig17430:1490..19831691683062.896913-UTR-L-elsbetiae_contig17430:1490..1983Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17430 1491..1983 -
1622815726.598736-UTR-L-elsbetiae_contig17430:2279..26251622815726.598736-UTR-L-elsbetiae_contig17430:2279..2625Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17430 2280..2625 -
1691683062.9327102-UTR-L-elsbetiae_contig17430:2279..26251691683062.9327102-UTR-L-elsbetiae_contig17430:2279..2625Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17430 2280..2625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.5770943-CDS-L-elsbetiae_contig17430:1983..20911622815726.5770943-CDS-L-elsbetiae_contig17430:1983..2091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17430 1984..2091 -
1691683062.9121265-CDS-L-elsbetiae_contig17430:1983..20911691683062.9121265-CDS-L-elsbetiae_contig17430:1983..2091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17430 1984..2091 -
1622815726.5875835-CDS-L-elsbetiae_contig17430:2267..22791622815726.5875835-CDS-L-elsbetiae_contig17430:2267..2279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17430 2268..2279 -
1691683062.9214628-CDS-L-elsbetiae_contig17430:2267..22791691683062.9214628-CDS-L-elsbetiae_contig17430:2267..2279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17430 2268..2279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17430.4896.1

>prot_L-elsbetiae_contig17430.4896.1 ID=prot_L-elsbetiae_contig17430.4896.1|Name=mRNA_L-elsbetiae_contig17430.4896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=40bp
MTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENEST*
back to top

mRNA from alignment at L-elsbetiae_contig17430:1491..2625-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17430.4896.1 ID=mRNA_L-elsbetiae_contig17430.4896.1|Name=mRNA_L-elsbetiae_contig17430.4896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1135bp|location=Sequence derived from alignment at L-elsbetiae_contig17430:1491..2625- (Laminarionema elsbetiae ELsaHSoW15)
CACAGCGTGACTCCCGGTCAATGATGAACACGTGCTCGATGTGAACCCTA
TTACATACTTATTTATGTTCGTGTTTATGTTCAGCTCTTGTTTTTTTCTG
TAATTTGGTAGATGCATATTTTGGTTCTAGTCTGCTGATTTGTCTCGTCG
AATCTTGAGTCTTCCTCCTATTAAAGTCTTCTGCGTGTGTACTTGCCACA
GATATAAATCCGAGACCTCTCAGTGACCAGGGTGCGTGCGTGCGTTATCG
CCTTGGCAGGGTTTAAATTTGGATCTCACTGCAGACCTTCAACCACCGAA
GGAGCTGCACGTGGAGGTCAGGGTCCTGAACGACTGCGGGGAAATCATGA
CAGATCACGTGAGAAAATAAGGTGCCAGTCTAACTCGCACAAGTTCAAAG
CCCTATATATGTTATTGCGAAACTTTGACCTGTTCAGCGGGAGGCCCGGT
TCGAATGATATTGCACATCTGTGTGTCTCAACCCTGGTAGCACAACGTAG
CATTGACTTGTGCTGCTCTTGTTTTTTTACACAGGGATCTGTGAAGCTTG
ACCGGGGAACCACCCACCTGTTGCGGAGGTCTGATGTGGAACATCTGGTG
CGTCAGGGTCTACTCCAAGAGCTGGAGAATGAGTCAACCTGACTCGACAT
CGGCCTGGATATAGAAGAGAGAGAGTTGGGGGGGCGTGGGCTGCGTGGTG
TAGACTAGTTAAATTGGCATGAACGCGTGAGCTTAACGTTCATGCTTTTG
TTGAATGGGAGAACAACTGTGCATATTGCCTCAAAAACAGCTGTGGTGGT
GTTGGTGTGGTACATAGCTTTTCCGCAGTGTTTTTAATACAATACTCCGG
GTAGTAATATACGTACCTACATATATAGCTGTCAAATTTTGTGTGTATGG
TGACACTCTACTGCGTATGTATGGCCAAGCCGCAGCCGCAGCACGGCGTA
TTTATCGAGGGCTCTGTACTTGCAACTTTTATTCCGTTAATCACAACTCC
GAATGAATGCTGATGCTAAACCTAAGTCTAGCTTCGTTGCTCCCCGCAAA
AAAAGTACCAGGAGCGACGTCTTGGGTTTTCCCTAGTGGCAAGGTTCGGT
GTTCTCTTGATTGATAAGGTGGCGGCATCACCAAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17430:1491..2625-

>mRNA_L-elsbetiae_contig17430.4896.1 ID=mRNA_L-elsbetiae_contig17430.4896.1|Name=mRNA_L-elsbetiae_contig17430.4896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=240bp|location=Sequence derived from alignment at L-elsbetiae_contig17430:1491..2625- (Laminarionema elsbetiae ELsaHSoW15)
ATGACAGATCACATGACAGATCACGGATCTGTGAAGCTTGACCGGGGAAC
CACCCACCTGTTGCGGAGGTCTGATGTGGAACATCTGGTGCGTCAGGGTC
TACTCCAAGAGCTGGAGAATGAGTCAACCTGAGGATCTGTGAAGCTTGAC
CGGGGAACCACCCACCTGTTGCGGAGGTCTGATGTGGAACATCTGGTGCG
TCAGGGTCTACTCCAAGAGCTGGAGAATGAGTCAACCTGA
back to top