mRNA_L-elsbetiae_contig1742.4888.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1742.4888.1
Unique NamemRNA_L-elsbetiae_contig1742.4888.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1742.4888.1 vs. uniprot
Match: D7G4T6_ECTSI (Plastid protein-export protein secB, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T6_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 2.140e-70
Identity = 132/200 (66.00%), Postives = 143/200 (71.50%), Query Frame = 2 
Query:  101 AALATCAFLPLSCLAFIVV-TGPSPLSVGRTAVHSRSAAGSQPGRRRGSNSRLGGSLPTPPRGSVVFQAAADGSEQVREQKQPTEE------QLEAARGKQLNIACNDVVRTILDGNPTNEKERAEALKQRLIAQKDDLVSPGDDMSALFFDNLLLVCSHELHPDIGILRGDYGKAWHTILHYIEDAGWQLTDPPFSISG 679
            A LA+C FL L C  FIVV    SPLS  R A     A+ S+   R    S +G   P       +     D SEQ REQ  PT+E      + EAAR KQLNIACNDVVRTILDGNPTNEKERAEAL+QRLI+QKDDLVSP DDMSALFFDNLLLVC HELHPDIGILRG YGKAW+TILHY+EDAGWQLTDPPFSISG
Sbjct:    3 AVLASCVFLSLPCSGFIVVPANSSPLSAYRRAAVRPPASSSRRLARCEGGSWVG-ERPAAVNAIALQATTDDNSEQAREQ--PTQEASLAAARQEAARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLISQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYVEDAGWQLTDPPFSISG 199
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BLAST of mRNA_L-elsbetiae_contig1742.4888.1 vs. uniprot
Match: A0A836CL25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL25_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.110e-27
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 2 
Query:  377 KQLNIACNDVVRTILDGNPTNEKERAEALKQRLIAQKDDLVSPGDDMSALFFDNLLLVCSHELHPDIGILRGDYGKAWHTILHYIEDAGWQLTDPPFSISG 679
            K LNIACNDV++TIL  +        + +K+RLI  K+ LV   D  S LF++NL+ VC H LHP +  L+G Y  AW ++LH+IEDAGWQLT+PPF ++G
Sbjct:   56 KHLNIACNDVIKTILKADAEKLDSDMQGIKERLIRDKELLVVTDDPQSELFYNNLVCVCEHSLHPRLHELKGRYASAWKSMLHWIEDAGWQLTEPPFRVNG 156
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1742.4888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4T6_ECTSI2.140e-7066.00Plastid protein-export protein secB, putative n=2 ... [more]
A0A836CL25_9STRA2.110e-2750.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1742contigL-elsbetiae_contig1742:10108..12013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionPlastid protein-export protein secB, putative
Ec32 orthologEc-20_000420.1
Exons2
Model size1345
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1742.4888.1prot_L-elsbetiae_contig1742.4888.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1742 10771..11928 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.8917599-UTR-L-elsbetiae_contig1742:10107..107701622815725.8917599-UTR-L-elsbetiae_contig1742:10107..10770Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1742 10108..10770 -
1691683062.4082675-UTR-L-elsbetiae_contig1742:10107..107701691683062.4082675-UTR-L-elsbetiae_contig1742:10107..10770Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1742 10108..10770 -
1622815725.9303296-UTR-L-elsbetiae_contig1742:11928..120131622815725.9303296-UTR-L-elsbetiae_contig1742:11928..12013Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1742 11929..12013 -
1691683062.4380925-UTR-L-elsbetiae_contig1742:11928..120131691683062.4380925-UTR-L-elsbetiae_contig1742:11928..12013Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1742 11929..12013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.9049654-CDS-L-elsbetiae_contig1742:10770..111511622815725.9049654-CDS-L-elsbetiae_contig1742:10770..11151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1742 10771..11151 -
1691683062.4200912-CDS-L-elsbetiae_contig1742:10770..111511691683062.4200912-CDS-L-elsbetiae_contig1742:10770..11151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1742 10771..11151 -
1622815725.9154813-CDS-L-elsbetiae_contig1742:11712..119281622815725.9154813-CDS-L-elsbetiae_contig1742:11712..11928Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1742 11713..11928 -
1691683062.429255-CDS-L-elsbetiae_contig1742:11712..119281691683062.429255-CDS-L-elsbetiae_contig1742:11712..11928Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1742 11713..11928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1742.4888.1

>prot_L-elsbetiae_contig1742.4888.1 ID=prot_L-elsbetiae_contig1742.4888.1|Name=mRNA_L-elsbetiae_contig1742.4888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=199bp
MTRLTAALATCAFLPLSCLAFIVVTGPSPLSVGRTAVHSRSAAGSQPGRR
RGSNSRLGGSLPTPPRGSVVFQAAADGSEQVREQKQPTEEQLEAARGKQL
NIACNDVVRTILDGNPTNEKERAEALKQRLIAQKDDLVSPGDDMSALFFD
NLLLVCSHELHPDIGILRGDYGKAWHTILHYIEDAGWQLTDPPFSISG*
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mRNA from alignment at L-elsbetiae_contig1742:10108..12013-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1742.4888.1 ID=mRNA_L-elsbetiae_contig1742.4888.1|Name=mRNA_L-elsbetiae_contig1742.4888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1906bp|location=Sequence derived from alignment at L-elsbetiae_contig1742:10108..12013- (Laminarionema elsbetiae ELsaHSoW15)
CCTATTTCGCCGCGTATTTTATCCAACACTGCCTGCCTGTGCCACCATCC
TTTGGCTTTTGGGGTAGACTCTCCCTTGCTCTACAATGACGCGATTGACG
GCCGCGCTGGCTACGTGTGCGTTCCTGCCACTGTCATGCTTGGCATTTAT
CGTGGTTACAGGTCCGTCTCCACTATCGGTCGGTCGAACAGCAGTTCATT
CTCGTTCGGCAGCAGGGAGCCAGCCCGGCAGGCGACGGGGCAGCAACAGC
CGTCTCGGAGGAAGCTTACCGACACCACCACGAGGAAGCGTCGTGTTTCA
GGTGTGGAAATAATCTTTGACCACTCCGGTGGGCTTTAACATATTTGCGC
ACCTTCGATTTCGCCTCCATGATCTCGACTTGAATTTCACAGCTGCAACC
CGTTCATGTTGTTCATCATGTGTTGCCTGACCGACTCACAAGGAAGACAG
CAGTAGTAGTAGTGGGTTCAGCTTGGATGCTGTAAGGTCTGGTAGGCGTC
AGGACGTTGTTGTAGATAAGTGGGAAATGTAGGTTATGAGATGGCTGCCG
TTACTCCATGTCAACGCACCCATCGCTGGACGCACAGATGATGGAGCGGT
CGGTGATTCGAGCAAACGTGCAGTGGGGGAGACATGAAATGAAGGATACC
AAAATCCGGCGGTAACTTCCGAGAAGAAAAGCTTTGTATCGCTTCACGGA
GTTGGCCCTACGCATGCTTTTTTGCTTACCTGCAGAGATGATCATAGCCT
CACGGCATGTGTGCCTACAAACGGTAAACGTTTCGATAGAAACTACATAT
ATGTGTATGTAGCTAATGACAACACACCACCGCCGTACCACCCCGAACTT
GGCTCGAGACAGGCAGCGGCCGATGGGAGCGAGCAGGTCCGTGAACAAAA
ACAGCCGACGGAGGAGCAGCTAGAGGCGGCCAGGGGTAAGCAGCTCAACA
TCGCCTGCAACGACGTCGTCCGGACCATCCTGGACGGTAACCCCACCAAC
GAGAAGGAGAGGGCCGAGGCCTTGAAGCAGAGACTGATCGCGCAGAAGGA
CGACCTAGTTTCTCCGGGGGACGACATGTCGGCGTTGTTCTTCGATAACC
TGCTGCTGGTGTGCAGCCACGAGCTCCACCCTGATATCGGCATCCTGCGG
GGGGACTACGGGAAGGCGTGGCACACGATCTTGCACTACATCGAAGACGC
CGGGTGGCAACTCACGGATCCACCTTTTTCCATCTCGGGGTAGAATTTTC
GGAGTCCAACCCCCGGGAGTCATTGCGGTTATGTTTTGCAGAGAGTCGTG
TTGCCTGTGAAGCGCAGAGCGTAGAGTTTGGCGACATCGAAATGCGCGAT
AGATTTTTTAAAAATAAACAATGAAGCAAAGATGGAACCTAACCCACACT
AGAGCAAGGACTCAATATGGGGTTCAAGCGCGATAGATTTTCCGTTGCAC
TGGTGGTCCTGCGGGTGGGGAGTGACCTGGTGTGATGCTACCACGGATGT
TCATCTATTTAGTCTTGCAGCAGTACAGCATGCAACATTTGAATCCCCAT
GTAGAGACTTGGCACACAACATCATTCGTGATTTGTTTACATAGAGCAGC
AGTGGTGCGTTTGGGTATCTTGTTCGGAGCAGATCGGCTCCTTGTTTTTT
GGATCTTCCTGTCTATGTAATTGAACTACTCGAGGCTCATGTTTTGAGGC
AGACGGGAGGTGGACCAAGCGAAAATGACTGTTTTGCGTTCTTGACAAAT
CCTTCTCCGGAAGCGTCCCTCCTCACGGCGAATGAAAACCCGTCCTCTTG
TTCGTTTTTTCCTCGAGGTCTCCCCACCGAAAGCTAACTCATTGAATTGT
TGCAGTTCCTCCCCCCGTGCCGGGCAGCTGTGCTAGGAAGCGTTCCTGGC
AAATCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1742:10108..12013-

>mRNA_L-elsbetiae_contig1742.4888.1 ID=mRNA_L-elsbetiae_contig1742.4888.1|Name=mRNA_L-elsbetiae_contig1742.4888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig1742:10108..12013- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGCGATTGACGGCCGCGCTGGCTACGTGTGCGTTCCTGCCACTGTC
ATGCTTGGCATTTATCGTGGTTACAGGTCCGTCTCCACTATCGGTCGGTC
GAACAGCAGTTCATTCTCGTTCGGCAGCAGGGAGCCAGCCCGGCAGGCGA
CGGGGCAGCAACAGCCGTCTCGGAGGAAGCTTACCGACACCACCACGAGG
AAGCGTCGTGTTTCAGATGACGCGATTGACGGCCGCGCTGGCTACGTGTG
CGTTCCTGCCACTGTCATGCTTGGCATTTATCGTGGTTACAGGTCCGTCT
CCACTATCGGTCGGTCGAACAGCAGTTCATTCTCGTTCGGCAGCAGGGAG
CCAGCCCGGCAGGCGACGGGGCAGCAACAGCCGTCTCGGAGGAAGCTTAC
CGACACCACCACGAGGAAGCGTCGTGTTTCAGGCAGCGGCCGATGGGAGC
GAGCAGGTCCGTGAACAAAAACAGCCGACGGAGGAGCAGCTAGAGGCGGC
CAGGGGTAAGCAGCTCAACATCGCCTGCAACGACGTCGTCCGGACCATCC
TGGACGGTAACCCCACCAACGAGAAGGAGAGGGCCGAGGCCTTGAAGCAG
AGACTGATCGCGCAGAAGGACGACCTAGTTTCTCCGGGGGACGACATGTC
GGCGTTGTTCTTCGATAACCTGCTGCTGGTGTGCAGCCACGAGCTCCACC
CTGATATCGGCATCCTGCGGGGGGACTACGGGAAGGCGTGGCACACGATC
TTGCACTACATCGAAGACGCCGGGTGGCAACTCACGGATCCACCTTTTTC
CATCTCGGGGTAGGCAGCGGCCGATGGGAGCGAGCAGGTCCGTGAACAAA
AACAGCCGACGGAGGAGCAGCTAGAGGCGGCCAGGGGTAAGCAGCTCAAC
ATCGCCTGCAACGACGTCGTCCGGACCATCCTGGACGGTAACCCCACCAA
CGAGAAGGAGAGGGCCGAGGCCTTGAAGCAGAGACTGATCGCGCAGAAGG
ACGACCTAGTTTCTCCGGGGGACGACATGTCGGCGTTGTTCTTCGATAAC
CTGCTGCTGGTGTGCAGCCACGAGCTCCACCCTGATATCGGCATCCTGCG
GGGGGACTACGGGAAGGCGTGGCACACGATCTTGCACTACATCGAAGACG
CCGGGTGGCAACTCACGGATCCACCTTTTTCCATCTCGGGGTAG
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