mRNA_L-elsbetiae_contig1742.4887.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1742.4887.1 vs. uniprot
Match: D7G4T5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T5_ECTSI) HSP 1 Score: 478 bits (1229), Expect = 7.410e-158 Identity = 326/659 (49.47%), Postives = 397/659 (60.24%), Query Frame = 1 Query: 1 QAQEVALDSTTGDFYAFDFKTDRWKAEGNMGIQKIRAGIGGIAAAILADASGGFEGNGCMKKVPVNDLLGIRREAQSAADVSSKALQRPTTPRRVLISFSTACLLEDRNRSVGLRFRN--RAYVDVRTTCASHNTGVVLAYVDRVR-VISSNRSMHPPTRARQGDREACRAGATHLL--FQSEVLIRVRLKSIQHRFLKHVPRGELLAWSPGKWGIGEGTAARCRRTFTVLAASSRAGPEIVEINNCLATRFTTRQEYQHATGLLEVFVQHKHYLIRSHNRIDRGSEFFVKGFQQGDDFDGMSVTSSQAQTAMEAMRAAKRQAPKGVASRRCQPQSSSRKESAAAASGKRAAPFPRRPQPIEKPRLAPPHSTRSIRAAPATGRDKMRGKDQP----LFSATAVAVDIQSGGHGXXXXXHEDGLVRRDGHLGTT-PR--RDEGARRQVKRGGSGRTAASAHGE----GGGRGRFRLVTRDRCPVPRRGMPRELGNKASV--PRRPRSATLGVRRGDRRRRDAASNALIRVPGHERRRPYNNFHRFLRMEQKTRAVFFSLGSGSVH----EGVATKCGAVAAGSDQQLEAETVPQNNQRFSANFGRKEAWKSVEQPTIRTQGPYLGKNWGAS--RETNADTRHLSINPKRWTSSGSKVSHM 1905 +A+EV LDS TGDFY F+FKTDRW AEGN+GIQK G+GG+AAAILADA+GG +G+GC +K PVN+LLG+RR QSAAD+SSK LQRP TPRRV ++ A +L +R +G R ++ R++ C S +G+VL + + + + HP R CRAG L FQSEVL+RVR KS+QHRFLKHV GE +AWSPGKW IGE TAARCR+TFTVLAAS+RAGPE+VE+ NCLATRF R YQH+TGLL+ FV+ KH LIR NRIDRGSEF + G DDFDGMSV SS Q A PQ ++R+ A KRA PFPRRPQP EKPR APP STR+IR + AT R KD + +AT + + GG GXXXX +T PR D RR ++G R H + GGG TRD + R P AS R+ RS G G RRRD A +++RVPG ERRRPYNNFHRF +ME++TR VFFSLG GS EGVA + A + + N +RFSA FGRKEAW + +P IRTQGPYLGKN AS + T+ + RHL NPKRW SGSKV ++ Sbjct: 5 EAKEVVLDSATGDFYVFNFKTDRWVAEGNVGIQKSCGGMGGVAAAILADAAGG-QGHGCEQKFPVNELLGVRRSVQSAADISSKTLQRPKTPRRVHVT-GVADVLGQTHRQMGHRSQHSQRSWRRKGRKCTS--SGLVLVGGEEIPDTFCTGLTTHPI-------RGWCRAGLATTLDRFQSEVLVRVRPKSVQHRFLKHVHCGEFIAWSPGKWSIGEATAARCRQTFTVLAASNRAGPEVVEVGNCLATRFNVRHGYQHSTGLLQAFVEDKHILIRDENRIDRGSEFVMNGMHTADDFDGMSVRSSHKQ-AXXXXXXXXXXXXXXXXXXXXXPQGNNRE--ATTTPCKRAVPFPRRPQPAEKPRFAPPQSTRAIRVSSATSERLGRTKDNDPSVLVGNATCIGGEATGGGCGXXXXHCXARTXXXXXXXESTLPRGTEDNVDRRHDEQGKIRRQQEQYHPQHDTSGGGAENGTTRTRDDDTLSRVRSPENTSEPASCIRSRKARSVAGG---GGERRRDVAVGSVVRVPGQERRRPYNNFHRFRKMERETRNVFFSLGCGSGSGKGCEGVAGENKARDTSRGAGADGNAI--NVKRFSAKFGRKEAWTPMPEPEIRTQGPYLGKNGCASSTKTTSLNPRHLLTNPKRWKFSGSKVGNV 644
BLAST of mRNA_L-elsbetiae_contig1742.4887.1 vs. uniprot
Match: A0A6H5L342_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L342_9PHAE) HSP 1 Score: 405 bits (1041), Expect = 3.260e-128 Identity = 322/800 (40.25%), Postives = 388/800 (48.50%), Query Frame = 1 Query: 4 AQEVALDSTTGDFYAFDFKTDRWKAEGNMGIQKIRAGIGGIAAAILADASGGFEGNGCMKKVPVNDLLGIRREAQSAADVSSKALQRPTTPRRVLISFSTACLLEDRNRSVGLRFRNRAYVDVRTTCASHNTGVVLAYVDRVRVISSNRSMHPPTRARQGDREACRAGATHLL--FQSEVLIRVRLKSIQHRFLKHVPRGELLAWSPGKWGIGEGTAARCRRTFTVLAASSRAGPEIVEINNCLATRFTTRQEYQHATGLLEVFVQHKHYLIRSHNRIDRGSEFFVKGFQQGDDFDGMSVTSSQAQTAMEAMRAAKRQAPKGVASRRCQPQSSSRKE------SAAAASGKRAAPFPRRPQPIEKPRLAPPHSTRSIRAAPATGRDKMR--------------------------GKDQPLFS-ATAVAVDIQSGGHGXXXXXHE-----------------------------DGLVRRDGHL------------------------------GTT-----PR--RDEGARRQVKRGGSGRTAASAHGE----GGGRGRFRLVTRDRCPVPRRGMPRELGNKASV--PRRPRSATLGVRRGDRRRRDAASNALIRVPGHERRRPYNNFHRFLRMEQKTRAVFFSLGSGSVH----EGVATKCGAVAAGSDQQLEAETVPQNNQRFSANFGRKEAWKSVEQPTIRTQG-----------------------------------------------------PYLGKNWGAS--RETNADTRHLSINPKRWTSSGSKVSHM 1905 A+EV LDS TGDFY FDFKTDRW AEGN+GIQK G+GGIAAAILADA+GG +G+GC +K PVN+LLG+RR QSAAD+SSK LQRP TPRRV A +L +R G + + +C V++ + + + HP R C G L FQSEVL+RVR KS+QHRFLKHV GE LAWSPGKW IGE TAARCR+TFTVLAAS+RAGPE+VEI NCLATR H+T LL FV+ KH LIR NRIDRGSEF + G Q DDFDGMSV SS Q A A + + S P +R++ A KRA PFPRRPQP EKPR APP STR+IR + AT + R G D + AT + D+ +G HG D L+ R+ HL GTT PR D+ RR ++G R H + GG TRD + R P AS R+ RS G G RRRD A +++RVPG ERRRPYN+F RF +ME++TR VFFSLG GS EGVA K A + + N +RFSANFGRKEAW + +P IRTQG PYLGKN AS + T+ + RHL NP+RW SGSKV ++ Sbjct: 4 AKEVVLDSATGDFYVFDFKTDRWVAEGNVGIQKSCGGMGGIAAAILADAAGG-QGHGCEQKFPVNELLGVRRSIQSAADISSKTLQRPKTPRRVH-EPDVAVVLGQAHRQTGHSLSKASAI----SCL-----VLVGREEIPDTFGTGLTTHPI-------RGWCHVGLVTPLDRFQSEVLVRVRPKSVQHRFLKHVHCGEFLAWSPGKWSIGEATAARCRQTFTVLAASNRAGPEVVEIGNCLATR-------HHSTSLLRAFVEDKHILIRDENRIDRGSEFVMNGMQTADDFDGMSVRSSHKQAAAAA------EIVLTICSAITFPSCHARRKMITHSTEATTTPCKRAVPFPRRPQPGEKPRFAPPQSTRAIRVSSATSERRGRTTENDPSVLVGNATRIGGEATGGGCGGDDSHCGARATGLGDDVDTGVHGGGQRQGSTTAANPVGRRRVLIARLGEGLGLDLSPAIDALLHREEHLRVPESHFGSSGDIPEALDENTPASRMPVSTGTTGESTLPRGTEDDADRRHDEQGKIQRQQKQHHPQHDTGGGSAENGTTRTRDDDTLSRVRSPENTSEPASCNRSRKVRSVAGG---GGERRRDVAMGSVVRVPGQERRRPYNSFDRFRKMERETRNVFFSLGCGSGSGKGCEGVAGKNKARDTSRGAGADGNAI--NVKRFSANFGRKEAWTPMSEPEIRTQGRLRCKHRWRSALVTLCTTCTSVAPFTSQLMSIANKHSLTLQPIVDCSPAVFSGPYLGKNGCASSTKTTSLNPRHLLTNPRRWKFSGSKVGNV 767 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1742.4887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1742.4887.1 >prot_L-elsbetiae_contig1742.4887.1 ID=prot_L-elsbetiae_contig1742.4887.1|Name=mRNA_L-elsbetiae_contig1742.4887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=641bp QAQEVALDSTTGDFYAFDFKTDRWKAEGNMGIQKIRAGIGGIAAAILADAback to top mRNA from alignment at L-elsbetiae_contig1742:3632..9505+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1742.4887.1 ID=mRNA_L-elsbetiae_contig1742.4887.1|Name=mRNA_L-elsbetiae_contig1742.4887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5874bp|location=Sequence derived from alignment at L-elsbetiae_contig1742:3632..9505+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1742:3632..9505+ >mRNA_L-elsbetiae_contig1742.4887.1 ID=mRNA_L-elsbetiae_contig1742.4887.1|Name=mRNA_L-elsbetiae_contig1742.4887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3846bp|location=Sequence derived from alignment at L-elsbetiae_contig1742:3632..9505+ (Laminarionema elsbetiae ELsaHSoW15)back to top |