mRNA_L-elsbetiae_contig17407.4883.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17407.4883.1
Unique NamemRNA_L-elsbetiae_contig17407.4883.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17407.4883.1 vs. uniprot
Match: A0A6H5L0F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F3_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 6.290e-15
Identity = 37/42 (88.10%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 VLTVVHRMATTLGLVGQQVWSAAFLLGDFVLTHEDLFAGMQV 126
            VLT+VH+MATTLGLVGQQVWSA+FLLGDFVLTH++LFAGMQV
Sbjct:  101 VLTIVHKMATTLGLVGQQVWSASFLLGDFVLTHDELFAGMQV 142
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BLAST of mRNA_L-elsbetiae_contig17407.4883.1 vs. uniprot
Match: D7FP93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP93_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.040e-14
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 VLTVVHRMATTLGLVGQQVWSAAFLLGDFVLTHEDLFAGMQV 126
            VLT+VH+MATTLGLVGQQVWSA+FLLGDFVLTH +LF GMQV
Sbjct:   93 VLTIVHKMATTLGLVGQQVWSASFLLGDFVLTHNELFVGMQV 134
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17407.4883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0F3_9PHAE6.290e-1588.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP93_ECTSI4.040e-1485.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17407contigL-elsbetiae_contig17407:2947..3372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-08_000300.1
Exons1
Model size426
Cds size144
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17407.4883.1prot_L-elsbetiae_contig17407.4883.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17407 2968..3111 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.0761852-UTR-L-elsbetiae_contig17407:2946..29671622815725.0761852-UTR-L-elsbetiae_contig17407:2946..2967Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17407 2947..2967 +
1691683061.8237512-UTR-L-elsbetiae_contig17407:2946..29671691683061.8237512-UTR-L-elsbetiae_contig17407:2946..2967Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17407 2947..2967 +
1622815725.0976126-UTR-L-elsbetiae_contig17407:3111..33721622815725.0976126-UTR-L-elsbetiae_contig17407:3111..3372Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17407 3112..3372 +
1691683061.853784-UTR-L-elsbetiae_contig17407:3111..33721691683061.853784-UTR-L-elsbetiae_contig17407:3111..3372Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17407 3112..3372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.086755-CDS-L-elsbetiae_contig17407:2967..31111622815725.086755-CDS-L-elsbetiae_contig17407:2967..3111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17407 2968..3111 +
1691683061.8358848-CDS-L-elsbetiae_contig17407:2967..31111691683061.8358848-CDS-L-elsbetiae_contig17407:2967..3111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17407 2968..3111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17407.4883.1

>prot_L-elsbetiae_contig17407.4883.1 ID=prot_L-elsbetiae_contig17407.4883.1|Name=mRNA_L-elsbetiae_contig17407.4883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=48bp
MATTLGLVGQQVWSAAFLLGDFVLTHEDLFAGMQVRCRYTSQCLQKT*
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mRNA from alignment at L-elsbetiae_contig17407:2947..3372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17407.4883.1 ID=mRNA_L-elsbetiae_contig17407.4883.1|Name=mRNA_L-elsbetiae_contig17407.4883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig17407:2947..3372+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCTCACCGTCGTGCACAGGATGGCCACTACCCTCGGGCTTGTTGGACA
ACAAGTGTGGTCAGCAGCTTTCTTGCTCGGCGACTTCGTGCTGACACACG
AAGATCTTTTTGCGGGGATGCAGGTGCGATGCAGATATACTTCGCAATGT
TTACAGAAGACGTAGTTGTATGTACGTCTTGTACATACATTACTCCTATG
TAGATAGTCTACATAATTTAGTAGCAAGTTGCTCTTTAAGAGTTTGCTGC
TGCTGTGTGAGTTTCCATCCGCTGACTTGGTAGCGGTGGTGGGCACCCAT
CTACAGCAGTCAGTCAGTACGTGTGCTAATGAAGCTAAATAAATACTCCC
TCCGTTCCGAAATATAAGCAAGGTTTGGACACTTGGCAGAAAAAATCAAG
CTGGCGGTGAGTGTTTGCGCCGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17407:2947..3372+

>mRNA_L-elsbetiae_contig17407.4883.1 ID=mRNA_L-elsbetiae_contig17407.4883.1|Name=mRNA_L-elsbetiae_contig17407.4883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=288bp|location=Sequence derived from alignment at L-elsbetiae_contig17407:2947..3372+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCACTACCCTCGGGCTTGTTGGACAACAAGTGTGGTCAGCAGCTTT
CTTGCTCGGCGACTTCGTGCTGACACACGAAGATCTTTTTGCGGGGATGC
AGGTGCGATGCAGATATACTTCGCAATGTTTACAGAAGACGTAGATGGCC
ACTACCCTCGGGCTTGTTGGACAACAAGTGTGGTCAGCAGCTTTCTTGCT
CGGCGACTTCGTGCTGACACACGAAGATCTTTTTGCGGGGATGCAGGTGC
GATGCAGATATACTTCGCAATGTTTACAGAAGACGTAG
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