mRNA_L-elsbetiae_contig1731.4837.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1731.4837.1
Unique NamemRNA_L-elsbetiae_contig1731.4837.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1731.4837.1 vs. uniprot
Match: D7FVZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ0_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 2.460e-51
Identity = 95/128 (74.22%), Postives = 106/128 (82.81%), Query Frame = -1
Query:   52 RSVSGVLSGFADWLMPGMEGRRSTDKTELLMEVYPSEPRSPPEARRPAVTRSAPPTPRGRR-PSSVLRDGGWFYNGDSDYSTSEEGMDANYESEDEGFWADAGTTKPPSKIGGGGGHGILSRLRKLFT 432
            RSVSGV SG ADWLMPGME RR   KTELL+EVYPS P+SP   + P VTRSAPPTPRGRR P+SVLRDGGWFYNGDSDYST EE +D ++ESEDEGFWADA  +K P +IGGGGG  IL+RL+KLFT
Sbjct:  599 RSVSGVFSGLADWLMPGMERRRPAVKTELLLEVYPSAPQSPERGQPPVVTRSAPPTPRGRRRPTSVLRDGGWFYNGDSDYSTEEE-VDGSFESEDEGFWADAAESKAPQRIGGGGGDSILTRLKKLFT 725          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1731.4837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVZ0_ECTSI2.460e-5174.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1731contigL-elsbetiae_contig1731:11607..12061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.1987448-CDS-L-elsbetiae_contig1731:11606..120591622815721.1987448-CDS-L-elsbetiae_contig1731:11606..12059Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1731 11607..12059 +
1691683059.3302464-CDS-L-elsbetiae_contig1731:11606..120591691683059.3302464-CDS-L-elsbetiae_contig1731:11606..12059Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1731 11607..12059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1731.4837.1prot_L-elsbetiae_contig1731.4837.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1731 11607..12059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1731.4837.1

>prot_L-elsbetiae_contig1731.4837.1 ID=prot_L-elsbetiae_contig1731.4837.1|Name=mRNA_L-elsbetiae_contig1731.4837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
SPTAEKKKISPPSPPASRKQLPEAAQDAVPAAAPYLRWRLRRPCVRPKSL
ILALVVRVHTLLRSRIVRVSVVEPPAVSQHRGWPPPARRRRRGPRHRRPA
RLGRRPRLARVHLHEQLRFVGRPATLHAGHQPVREPGQHPRDRPILARRH
P
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mRNA from alignment at L-elsbetiae_contig1731:11607..12061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1731.4837.1 ID=mRNA_L-elsbetiae_contig1731.4837.1|Name=mRNA_L-elsbetiae_contig1731.4837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=455bp|location=Sequence derived from alignment at L-elsbetiae_contig1731:11607..12061+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCCGACCGCTGAAAAAAAGAAAATATCTCCGCCTTCACCGCCAGCGTC ACGTAAACAGCTTCCTGAGGCGGCTCAGGATGCCGTGCCCGCCGCCGCCC CCTATCTTCGATGGCGGCTTCGTCGTCCCTGCGTCCGCCCAAAATCCCTC ATCCTCGCTCTCGTAGTTCGCGTCCATACCCTCCTCCGAAGTCGAATAGT CCGAGTCTCCGTTGTAGAACCACCCGCCGTCTCTCAGCACCGAGGATGGC CTCCGCCCGCGCGGCGTCGGCGGCGCGGACCTCGTCACCGCCGGCCGGCG CGCCTCGGGCGGCGACCGCGGCTCGCTCGGGTACACCTCCATGAGCAGCT CCGTTTTGTCGGTCGACCGGCGACCCTCCATGCCGGGCATCAGCCAGTCC GCGAACCCGGACAGCACCCCCGAGACCGACCGATACTGGCGCGCCGCCAC CCTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1731:11607..12061+

>mRNA_L-elsbetiae_contig1731.4837.1 ID=mRNA_L-elsbetiae_contig1731.4837.1|Name=mRNA_L-elsbetiae_contig1731.4837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig1731:11607..12061+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCCGACCGCTGAAAAAAAGAAAATATCTCCGCCTTCACCGCCAGCGTC
ACGTAAACAGCTTCCTGAGGCGGCTCAGGATGCCGTGCCCGCCGCCGCCC
CCTATCTTCGATGGCGGCTTCGTCGTCCCTGCGTCCGCCCAAAATCCCTC
ATCCTCGCTCTCGTAGTTCGCGTCCATACCCTCCTCCGAAGTCGAATAGT
CCGAGTCTCCGTTGTAGAACCACCCGCCGTCTCTCAGCACCGAGGATGGC
CTCCGCCCGCGCGGCGTCGGCGGCGCGGACCTCGTCACCGCCGGCCGGCG
CGCCTCGGGCGGCGACCGCGGCTCGCTCGGGTACACCTCCATGAGCAGCT
CCGTTTTGTCGGTCGACCGGCGACCCTCCATGCCGGGCATCAGCCAGTCC
GCGAACCCGGACAGCACCCCCGAGACCGACCGATACTGGCGCGCCGCCAC
CCTTCCCCGACCGCTGAAAAAAAGAAAATATCTCCGCCTTCACCGCCAGC
GTCACGTAAACAGCTTCCTGAGGCGGCTCAGGATGCCGTGCCCGCCGCCG
CCCCCTATCTTCGATGGCGGCTTCGTCGTCCCTGCGTCCGCCCAAAATCC
CTCATCCTCGCTCTCGTAGTTCGCGTCCATACCCTCCTCCGAAGTCGAAT
AGTCCGAGTCTCCGTTGTAGAACCACCCGCCGTCTCTCAGCACCGAGGAT
GGCCTCCGCCCGCGCGGCGTCGGCGGCGCGGACCTCGTCACCGCCGGCCG
GCGCGCCTCGGGCGGCGACCGCGGCTCGCTCGGGTACACCTCCATGAGCA
GCTCCGTTTTGTCGGTCGACCGGCGACCCTCCATGCCGGGCATCAGCCAG
TCCGCGAACCCGGACAGCACCCCCGAGACCGACCGATACTGGCGCGCCGC
CACCCT
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