prot_L-elsbetiae_contig1729.4826.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1729.4826.1
Unique Name	prot_L-elsbetiae_contig1729.4826.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	351

Homology

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BLAST of mRNA_L-elsbetiae_contig1729.4826.1 vs. uniprot
Match: A0A6H5KGB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB2_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 3.740e-47
Identity = 153/363 (42.15%), Postives = 178/363 (49.04%), Query Frame = 0

Query:    5 GTSSVQVPARHLGSSGLSLSSTDDRR-------RRPTGAMELRRAVEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALRACVGAGEWDRAAALLVDMEGSGATADVDVLREIKAAGGXXXXXXXARLQDDG-LTCDSSIS-SSDVXXXXXXXXXXXXXXXXXXAAGMHTVAVDADIDWPSRRPAHDCCD--------GGSRXXXXXXXXXXEDSESLMSFDPFSVGPITSNASSINXXXXXXXXXXXXXXXXXXXXXXXWPSRRPTSXXXXXXXXXXXXXXXXXXXRSSARRSLGNVSWGHESQERWHKHEHLLQHENDTTGPHSGAARLGSGAPVLGKAGAGWLSAKAAPFAGSWGDD 350
            GT  VQ         GLSL+ST DRR       RRPT AMELRRA EVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVAL+AC GAGEW RAAAL+ DM+GSGA  D  ++ EI+AAG          ++DDG L+CDS    SS +                   A MHT A  AD+ WPSRRP     D        GGS     XXXXXX            S G  T+ + S                               +  XXXXXXXXX         R S+  SLG+++WG     RW  H    + +N ++   +     G     L      W S  +A FAGSWGDD
Sbjct:   15 GTVDVQQVGGRRCMGGLSLASTVDRRKRDGVDARRPTAAMELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDEGIVAEIRAAG---DKTGVIAVEDDGNLSCDSGGDVSSVISGVARNKGGGSGGGIQGSVASMHTAAFGADVAWPSRRPTQTQDDQAQRGSSSGGSGSDDLXXXXXXXXXXXXXXXXXNSNGGRTATSHS-------------------------------SHSXXXXXXXXXGDEYGNAATRGSSEGSLGSIAWGGR---RWRSHHQETEDKNASSASPATRGARGVNEEAL----PAWPSVASATFAGSWGDD 336

[Close]

BLAST of mRNA_L-elsbetiae_contig1729.4826.1 vs. uniprot
Match: D7G7H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H2_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.260e-39
Identity = 93/172 (54.07%), Postives = 106/172 (61.63%), Query Frame = 0

Query:   20 GLSLSSTDDRR-------RRPTGAMELRRAVEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALRACVGAGEWDRAAALLVDMEGSGATADVDVLREIKAAGGXXXXXXXARLQDDGLTCDSSISSSDVXXXXXXXXXXXXXXXXXXAAGMHTVAVDADIDWPSRRPAH 184
            GLSL+ST DRR       RRPT AMEL+RA EVQKCADKGWKSALICLGNMRKGGVAPGS+AYNVAL+AC GAGEW RAAAL+ DM+GSGA  D  ++ EI+AAG            +D L+CDS    S V                    G  +     D  WPSRRP +
Sbjct:   30 GLSLASTVDRRKKDGVDARRPTAAMELKRAAEVQKCADKGWKSALICLGNMRKGGVAPGSSAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDETIVAEIRAAGDNVVVMELG--DNDDLSCDSGGDVSSVLSGAARNK------------GGESGGGIQDAAWPSRRPTN 187

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1729.4826.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1729.4826.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KGB2_9PHAE	3.740e-47	42.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G7H2_ECTSI	1.260e-39	54.07	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 32..163 e-value: 8.0E-8 score: 34.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 74..103 e-value: 0.0031 score: 15.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 71..105 score: 8.605

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1729	contig	L-elsbetiae_contig1729:6970..8681 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1729.4826.1	mRNA_L-elsbetiae_contig1729.4826.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1729 6963..9256 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1729.4826.1 ID=prot_L-elsbetiae_contig1729.4826.1|Name=mRNA_L-elsbetiae_contig1729.4826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=351bp
MPQAGTSSVQVPARHLGSSGLSLSSTDDRRRRPTGAMELRRAVEVQKCAD
KGWKSALICLGNMRKGGVAPGSAAYNVALRACVGAGEWDRAAALLVDMEG
SGATADVDVLREIKAAGGAGAGAGAARLQDDGLTCDSSISSSDVSVAAAA
AARNRGGGGGGSAAGMHTVAVDADIDWPSRRPAHDCCDGGSRGGGGGGGG
GNEDSESLMSFDPFSVGPITSNASSINSSGSGSSGSIAGMHTVADGADGA
WPSRRPTSDGSSSRSGGGGGGDGGDGGRSSARRSLGNVSWGHESQERWHK
HEHLLQHENDTTGPHSGAARLGSGAPVLGKAGAGWLSAKAAPFAGSWGDD
*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat