mRNA_L-elsbetiae_contig17239.4802.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17239.4802.1
Unique NamemRNA_L-elsbetiae_contig17239.4802.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17239.4802.1 vs. uniprot
Match: D7G0K6_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K6_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 3.910e-40
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:    1 TEVTARHILVKHKGSRRPASWQDPTGATIKTRHQTSATAILQSLRTGIKTQDDFAKIASARSDCSSAKRGGDLGTFGRGKMQ 246
            TEVTARHILVKHKGSRRPASWQDP GA+IK R Q  A +ILQ LR+GIK+Q+DF+K+A+ARSDCSSAKRGGDLGTFGRGKMQ
Sbjct:   15 TEVTARHILVKHKGSRRPASWQDPAGASIKQRTQAQAASILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 96
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BLAST of mRNA_L-elsbetiae_contig17239.4802.1 vs. uniprot
Match: A0A6H5K9M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M4_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 5.700e-36
Identity = 66/82 (80.49%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:    1 TEVTARHILVKHKGSRRPASWQDPTGATIKTRHQTSATAILQSLRTGIKTQDDFAKIASARSDCSSAKRGGDLGTFGRGKMQ 246
            TEVTARHILVKHKGSRRPASWQDP+G +I+ R Q  AT+ILQ LR+GIK+Q+DF+K+A+ARSDCSSAKRGGDLGTFGRGKMQ
Sbjct:  393 TEVTARHILVKHKGSRRPASWQDPSGVSIRQRTQGQATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 474
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BLAST of mRNA_L-elsbetiae_contig17239.4802.1 vs. uniprot
Match: A0A836CKW2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKW2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.970e-25
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    7 VTARHILVKHKGSRRPASWQDPTGATIKTRHQTSATAILQSLRTGIKTQDDFAKIASARSDCSSAKRGGDLGTFGRGKMQ 246
            + ARHILVKH+GSRRPASW+DP G  I  R +  A A+L  +R  I+T +DFA++A   SDCSSA+ GGDLG FG G+MQ
Sbjct:    1 MRARHILVKHQGSRRPASWKDPEGIEISARSREQAIAMLNDIRASIRTPEDFARVAQTASDCSSARNGGDLGEFGPGQMQ 80
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BLAST of mRNA_L-elsbetiae_contig17239.4802.1 vs. uniprot
Match: A0A7S2Y508_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y508_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.080e-23
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    1 TEVTARHILVKHKGSRRPASWQDPTGATIKTRHQTSATAILQSLRTGIKTQDDFAKIASARSDCSSAKRGGDLGTFGRGKM 243
            ++V A H+L+KH GSRRPASW+DP G  I+ R +  A  ILQ+LR+ I   +DFA +A+  SDCSSA+ GGDLG FG G+M
Sbjct:    2 SQVRASHLLIKHSGSRRPASWKDPDGNEIRARSRDQAVQILQTLRSQISGPEDFANLAAQHSDCSSARNGGDLGPFGPGQM 82
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BLAST of mRNA_L-elsbetiae_contig17239.4802.1 vs. uniprot
Match: G7LCY6_MEDTR (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Medicago truncatula TaxID=3880 RepID=G7LCY6_MEDTR)

HSP 1 Score: 92.0 bits (227), Expect = 2.840e-22
Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:    4 EVTARHILVKHKGSRRPASWQDPTGATIKTRHQTSATAILQSLRTGIKT-QDDFAKIASARSDCSSAKRGGDLGTFGRGKMQ 246
            EV A HIL+KH+GSRR ASW+DP G  IK   + SA AIL S++  I T +  F  +AS  SDCSSAKRGGDLG+FGRG+MQ
Sbjct:    9 EVRASHILIKHEGSRRKASWKDPEGYVIKNTTRESAVAILTSMKEDILTGKAKFEDLASRYSDCSSAKRGGDLGSFGRGQMQ 90
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BLAST of mRNA_L-elsbetiae_contig17239.4802.1 vs. uniprot
Match: D8LM37_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM37_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.740e-22
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:    7 VTARHILVKHKGSRRPASWQDPTGATIKTRHQTSATAILQSLRTGIKTQDDFAKIASARSDCSSAKRGGDLGTFGRGKM 243
            + A HILVKH+GSRR ASW+D  G  IKTR +  A  +L  LR  I TQ+DFA+IA   SDC SA+ GGDLG FG G+M
Sbjct:    1 MRASHILVKHQGSRRTASWKDVDGVVIKTRTKAEAINMLMDLRAKISTQEDFAEIAQEHSDCGSARAGGDLGEFGDGQM 79
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BLAST of mRNA_L-elsbetiae_contig17239.4802.1 vs. uniprot
Match: A0A1S2YSU2_CICAR (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YSU2_CICAR)

HSP 1 Score: 90.9 bits (224), Expect = 8.550e-22
Identity = 49/82 (59.76%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:    4 EVTARHILVKHKGSRRPASWQDPTGATIKTRHQTSATAILQSLRTGIKT-QDDFAKIASARSDCSSAKRGGDLGTFGRGKMQ 246
            EV A HIL+KH+GSRR ASW+DP G  IK   + SA AIL++++  I + +  F  IAS  SDCSSAKRGGDLG FGRG+MQ
Sbjct:   11 EVRASHILIKHEGSRRKASWKDPEGYVIKNTSRDSAVAILKAMQNDIVSGKATFEDIASRYSDCSSAKRGGDLGAFGRGQMQ 92
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BLAST of mRNA_L-elsbetiae_contig17239.4802.1 vs. uniprot
Match: A0A833VFC4_9POAL (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VFC4_9POAL)

HSP 1 Score: 90.5 bits (223), Expect = 9.760e-22
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    4 EVTARHILVKHKGSRRPASWQDPTGATIKTRHQTSATAILQSLRTGIKT-QDDFAKIASARSDCSSAKRGGDLGTFGRGKMQ 246
            EV A HIL+KH+GSRR ASW+DP G  I T  +  A A LQSLR  + + +  F+ +AS  SDCSSAKRGGDLG FGRG+MQ
Sbjct:    3 EVRASHILIKHEGSRRKASWKDPDGRVISTTTREVAAARLQSLREEVVSGRAHFSDLASVHSDCSSAKRGGDLGKFGRGQMQ 84
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BLAST of mRNA_L-elsbetiae_contig17239.4802.1 vs. uniprot
Match: A7DX09_LOTJA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lotus japonicus TaxID=34305 RepID=A7DX09_LOTJA)

HSP 1 Score: 89.4 bits (220), Expect = 3.280e-21
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    4 EVTARHILVKHKGSRRPASWQDPTGATIKTRHQTSATAILQSLRTGIKT-QDDFAKIASARSDCSSAKRGGDLGTFGRGKMQ 246
            EV A HIL+KH+GSRR ASW+DP G  IK   + SA A L +LR  I + + +F  +AS  SDCSSAKRGGDLG FGRG+MQ
Sbjct:    9 EVRASHILIKHQGSRRKASWKDPEGRVIKNTTRESAVAQLSTLREDILSGKANFEDVASRISDCSSAKRGGDLGPFGRGQMQ 90
[Close]
BLAST of mRNA_L-elsbetiae_contig17239.4802.1 vs. uniprot
Match: A0A2H9ZWQ0_9ASPA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZWQ0_9ASPA)

HSP 1 Score: 89.0 bits (219), Expect = 4.290e-21
Identity = 47/82 (57.32%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    4 EVTARHILVKHKGSRRPASWQDPTGATIKTRHQTSATAILQSLRTGIKT-QDDFAKIASARSDCSSAKRGGDLGTFGRGKMQ 246
            +V A HIL+KH+GSRR ASW+DP G  I    + +A A L +LR  I + Q  F ++AS  SDCSSAKRGGDLG FGRG+MQ
Sbjct:    6 QVRASHILIKHEGSRRKASWKDPDGRVISATTRDAAAANLMALRDSIVSGQSTFEEVASRHSDCSSAKRGGDLGRFGRGQMQ 87
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17239.4802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0K6_ECTSI3.910e-4081.71Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A6H5K9M4_9PHAE5.700e-3680.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CKW2_9STRA3.970e-2558.75Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7S2Y508_9STRA4.080e-2355.56Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibroc... [more]
G7LCY6_MEDTR2.840e-2260.98Peptidyl-prolyl cis-trans isomerase n=1 Tax=Medica... [more]
D8LM37_ECTSI5.740e-2258.23Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A1S2YSU2_CICAR8.550e-2259.76Peptidyl-prolyl cis-trans isomerase n=1 Tax=Cicer ... [more]
A0A833VFC4_9POAL9.760e-2259.76Peptidyl-prolyl cis-trans isomerase n=1 Tax=Carex ... [more]
A7DX09_LOTJA3.280e-2159.76Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lotus ... [more]
A0A2H9ZWQ0_9ASPA4.290e-2157.32Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aposta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17239contigL-elsbetiae_contig17239:1850..2976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue4.3e-31
Seed eggNOG ortholog2880.D7G0K6
Preferred nameESS1
KEGG koko:K02887,ko:K09578
KEGG Pathwayko03010,ko04622,map03010,map04622
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000413,GO:0000993,GO:0001098,GO:0001099,GO:0001932,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005886,GO:0005911,GO:0006139,GO:0006325,GO:0006351,GO:0006353,GO:0006355,GO:0006357,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006457,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0009058,GO:0009059,GO:0009506,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009909,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016569,GO:0016570,GO:0016571,GO:0016853,GO:0016859,GO:0018022,GO:0018023,GO:0018130,GO:0018193,GO:0018205,GO:0018208,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0030054,GO:0030162,GO:0031056,GO:0031057,GO:0031063,GO:0031064,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031334,GO:0031399,GO:0031400,GO:0031401,GO:0031935,GO:0031937,GO:0032259,GO:0032268,GO:0032269,GO:0032270,GO:0032774,GO:0032784,GO:0032879,GO:0032880,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034968,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0036211,GO:0042176,GO:0042177,GO:0042325,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043412,GO:0043414,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045861,GO:0045892,GO:0045893,GO:0045898,GO:0045899,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051726,GO:0055044,GO:0060255,GO:0060260,GO:0060261,GO:0060968,GO:0061187,GO:0065007,GO:0070063,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080182,GO:0090304,GO:0090311,GO:0097659,GO:0140096,GO:1901360,GO:1901362,GO:1901407,GO:1901564,GO:1901576,GO:1902275,GO:1902679,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1905269,GO:2000026,GO:2000058,GO:2000059,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2000241,GO:2000749,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.positive regulation of chromatin silencing at rDNA
EggNOG OGsCOG0760@1,KOG3259@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03021,ko03110
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.5538795-CDS-L-elsbetiae_contig17239:1849..20001622815718.5538795-CDS-L-elsbetiae_contig17239:1849..2000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17239 1850..2000 -
1691683057.5979009-CDS-L-elsbetiae_contig17239:1849..20001691683057.5979009-CDS-L-elsbetiae_contig17239:1849..2000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17239 1850..2000 -
1622815718.5682626-CDS-L-elsbetiae_contig17239:2881..29761622815718.5682626-CDS-L-elsbetiae_contig17239:2881..2976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17239 2882..2976 -
1691683057.6183872-CDS-L-elsbetiae_contig17239:2881..29761691683057.6183872-CDS-L-elsbetiae_contig17239:2881..2976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17239 2882..2976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17239.4802.1prot_L-elsbetiae_contig17239.4802.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17239 1850..2976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17239.4802.1

>prot_L-elsbetiae_contig17239.4802.1 ID=prot_L-elsbetiae_contig17239.4802.1|Name=mRNA_L-elsbetiae_contig17239.4802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
TEVTARHILVKHKGSRRPASWQDPTGATIKTRHQTSATAILQSLRTGIKT
QDDFAKIASARSDCSSAKRGGDLGTFGRGKMQ
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mRNA from alignment at L-elsbetiae_contig17239:1850..2976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17239.4802.1 ID=mRNA_L-elsbetiae_contig17239.4802.1|Name=mRNA_L-elsbetiae_contig17239.4802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1127bp|location=Sequence derived from alignment at L-elsbetiae_contig17239:1850..2976- (Laminarionema elsbetiae ELsaHSoW15)
ACCGAAGTGACCGCGAGGCACATCCTGGTCAAGCACAAAGGATCCCGGCG
GCCGGCATCCTGGCAAGACCCCACCGGCGCCACCATCAAGACGAGGTTAG
AGACGAGCGACTTGACCCAACCCGGTTATCAGCAGCAGTTGTGTATTCGC
CCCATCAAGCAGAGACATATGTGTAATGTGTATGTATGTTGTAAAAGACC
GTTCCGATCTCTCCATCCAGTATTTACCTCTCAATGTCCGTACTAATCCA
ACACTTGATGCGGTCAATTCCCGTGATCACAGGCTAATTTATACCCAAGA
AAAGGTACACGAAAAATAAAATGGACCCGAAGCGCCAGCAAAGCGATAAT
AAAACAGAGACAGATATACGGTAGTCCGCCAAGTTGTACGCGTGTATGGT
ATATCCTTCATCAAGCAGAAACTTATTAGAGAGACACGTATCCCCATCCA
TGAACGCTTGTGTTGTGTACGCAACCCGCTCAAGAAAGTCGGCCTCAAAA
ACTCTAAAATGCGAGAACATGTGGCACTATGTAAAGTTCTGGGGGGGGGG
GGGGGGGCTTCGGGTTCCCTTCTCTCTCTTCCTTTTCGTCGCTTTTTCCC
CTGCCCCTTTCCCCTTTTTTTTCCTCTTTTTNNNNNNNNNCAGAACGCCT
TCCACTAGACACCCTCCAATCAAGCTGGTGGTTGGCTATGTTTTGGTTTG
GGGGGGGGGGGGGGGTGGGGCTTCGGGTTCCCTTCTCTCTCTTACTTTTC
GTCGCTTTCTCTCCTGCCCCTTTCCTCATTTTTCTCCTCTTATTTTTCTC
TTATTTTTCTCTCTTTCTTTTTTCTTCTTTCCCTCCTGTTTCTTTCCTTG
CCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG
TCTGACCTCCGCCTCCTCATATTCCTCTTCGTTTTCGCCTGTCTTGTTTC
TCGCTGCCTCTTTCTCTGTCGGATAGGCACCAAACGTCGGCGACCGCCAT
CCTGCAGTCCCTCCGCACCGGCATCAAGACCCAGGACGACTTCGCCAAGA
TCGCGTCGGCTAGGTCCGACTGCTCCAGCGCCAAGCGGGGTGGTGACCTT
GGTACCTTCGGACGGGGCAAGATGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17239:1850..2976-

>mRNA_L-elsbetiae_contig17239.4802.1 ID=mRNA_L-elsbetiae_contig17239.4802.1|Name=mRNA_L-elsbetiae_contig17239.4802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig17239:1850..2976- (Laminarionema elsbetiae ELsaHSoW15)
ACCGAAGTGACCGCGAGGCACATCCTGGTCAAGCACAAAGGATCCCGGCG
GCCGGCATCCTGGCAAGACCCCACCGGCGCCACCATCAAGACGAGACCGA
AGTGACCGCGAGGCACATCCTGGTCAAGCACAAAGGATCCCGGCGGCCGG
CATCCTGGCAAGACCCCACCGGCGCCACCATCAAGACGAGGCACCAAACG
TCGGCGACCGCCATCCTGCAGTCCCTCCGCACCGGCATCAAGACCCAGGA
CGACTTCGCCAAGATCGCGTCGGCTAGGTCCGACTGCTCCAGCGCCAAGC
GGGGTGGTGACCTTGGTACCTTCGGACGGGGCAAGATGCAGGCACCAAAC
GTCGGCGACCGCCATCCTGCAGTCCCTCCGCACCGGCATCAAGACCCAGG
ACGACTTCGCCAAGATCGCGTCGGCTAGGTCCGACTGCTCCAGCGCCAAG
CGGGGTGGTGACCTTGGTACCTTCGGACGGGGCAAGATGCAG
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