mRNA_L-elsbetiae_contig17096.4739.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig17096.4739.1 vs. uniprot
Match: A0A6H5L4G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G7_9PHAE) HSP 1 Score: 223 bits (567), Expect = 4.210e-71 Identity = 115/121 (95.04%), Postives = 118/121 (97.52%), Query Frame = 1 Query: 1 VTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLRVLRHDKSVLHPLRKLDHLKHIPDYLMPRGLQTGEDPTQRQRKRIKRARGGAKRRQGQGQDQGRRKDNDPLQTFEASELGADGSYG 363 VTRV VREARAAELKAEI+NSQKLAGYFKENAGDL+VLRHDKSVLHPLRKLDHLKHIPDYLMP GLQTGEDPTQRQRKR+KRARGGAKRRQGQG DQGRRKDNDPLQTFEASELGADGSYG Sbjct: 84 VTRVRVREARAAELKAEIINSQKLAGYFKENAGDLKVLRHDKSVLHPLRKLDHLKHIPDYLMPTGLQTGEDPTQRQRKRMKRARGGAKRRQGQGLDQGRRKDNDPLQTFEASELGADGSYG 204
BLAST of mRNA_L-elsbetiae_contig17096.4739.1 vs. uniprot
Match: D7FNE7_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE7_ECTSI) HSP 1 Score: 226 bits (575), Expect = 4.130e-67 Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 1 Query: 1 VTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLRVLRHDKSVLHPLRKLDHLKHIPDYLMPRGLQTGEDPTQRQRKRIKRARGGAKRRQGQGQDQGRRKDNDPLQTFEASELGADGSYG 363 VTRVSVREARAAELKAEIVNSQKLAGYFKENAGDL+VLRHDKSVLHPLRKLDHLKHIPDYLMP GLQTGEDPTQRQRKRIKRARGGAKRRQGQG DQGRRKDNDPLQTFEASELGADGSYG Sbjct: 631 VTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLKVLRHDKSVLHPLRKLDHLKHIPDYLMPPGLQTGEDPTQRQRKRIKRARGGAKRRQGQGLDQGRRKDNDPLQTFEASELGADGSYG 751
BLAST of mRNA_L-elsbetiae_contig17096.4739.1 vs. uniprot
Match: A0A835ZDE1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE1_9STRA) HSP 1 Score: 112 bits (280), Expect = 2.840e-26 Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 1 Query: 1 VTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLRVLRHDKSVLHPLRKLDHLKHIPDYLMPRGLQTGEDPTQRQRKRIKR 246 VTRV VREARAAEL+ E++NS L +FK + DLRVLRHDK+ L+P +LDHLKHIP YLMP GL TGEDPT+RQ KR KR Sbjct: 503 VTRVMVREARAAELRRELINSHALDAHFKSHPDDLRVLRHDKTALNPALRLDHLKHIPSYLMPAGLATGEDPTERQAKRKKR 584
BLAST of mRNA_L-elsbetiae_contig17096.4739.1 vs. uniprot
Match: A0A4D9D2A0_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2A0_9STRA) HSP 1 Score: 101 bits (251), Expect = 3.600e-23 Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 1 Query: 1 VTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLRVLRHDKSVLHPLRKLDHLKHIPDYLMPRGLQTGEDPTQRQRKRIKRARGGAKRRQGQGQDQGRRKDNDPLQTF 327 VTR++V+EAR AE+K E++NSQ L +F+EN + ++LRHDK +L R +HLKH+PDYL+P G++ G DP ++ A G KR GQG D RRK NDPLQ F Sbjct: 135 VTRMAVKEARLAEIKQELLNSQALKTHFQENPHEFQILRHDKGLLPSHRVQEHLKHVPDYLLPDGMRVGADPAAKKXXXXXXA--GRKRAVGQGADPQRRKGNDPLQHF 241
BLAST of mRNA_L-elsbetiae_contig17096.4739.1 vs. uniprot
Match: A0A7R9UC43_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC43_9STRA) HSP 1 Score: 102 bits (254), Expect = 9.390e-23 Identity = 44/75 (58.67%), Postives = 62/75 (82.67%), Query Frame = 1 Query: 1 VTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLRVLRHDKSVLHPLRKLDHLKHIPDYLMPRGLQTGEDPTQR 225 VT ++++EARAAELK E++N+ +L YF+EN DL++LRHDK++LHP R DHLKH+PDYL+P G++ G DP+QR Sbjct: 589 VTAIAIKEARAAELKQEMLNNARLQNYFEENPQDLQLLRHDKTILHPTRVQDHLKHVPDYLIPDGIEVGADPSQR 663
BLAST of mRNA_L-elsbetiae_contig17096.4739.1 vs. uniprot
Match: A0A7S0XN96_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S0XN96_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 5.490e-22 Identity = 54/124 (43.55%), Postives = 81/124 (65.32%), Query Frame = 1 Query: 1 VTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLRVLRHDKSVLHPLRKLDHLKHIPDYLMPRGLQTGEDPTQRQRKRIKRARGGAKRRQGQGQDQGRRKDNDPLQTFEASELGADGSYGVKG 372 VT+V++RE RAAE+KAEI+NS++L +F EN DL++L+HD+ + DHLKH+P Y++PRG+Q E +R++K+ + R A R ++GR K NDPLQ F+ ++ DG G G Sbjct: 194 VTKVAIRETRAAEVKAEILNSERLQAHFDENPADLQLLQHDRQATKISKVQDHLKHVPTYMLPRGMQVAEVSRKRRKKKTRSQRIAASR-----AERGRNKSNDPLQNFDG-DVNMDGLVGDDG 311
BLAST of mRNA_L-elsbetiae_contig17096.4739.1 vs. uniprot
Match: B8C552_THAPS (Dead-box RNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C552_THAPS) HSP 1 Score: 98.2 bits (243), Expect = 2.420e-21 Identity = 50/109 (45.87%), Postives = 74/109 (67.89%), Query Frame = 1 Query: 1 VTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLRVLRHDKSVLHPLRKLDHLKHIPDYLMPRGLQTGEDPTQRQRKRIKRARGGAKRRQGQGQDQGRRKDNDPLQTF 327 VTRV+VRE RAAE+KAEI+NS++L +F+EN DL++L+HD+ H + DHLKH+P YL+PRG++ + +R++K+ + R ++ R KDNDPLQ F Sbjct: 430 VTRVAVRETRAAEVKAEILNSERLQSHFQENPADLQLLQHDRQATHISKVQDHLKHVPKYLLPRGMEVADVSRKRRKKKTRSQRMASR---------ARNKDNDPLQNF 529
BLAST of mRNA_L-elsbetiae_contig17096.4739.1 vs. uniprot
Match: A0A1Z5KBW1_FISSO (ATP-dependent RNA helicase DDX56/DBP9 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBW1_FISSO) HSP 1 Score: 98.2 bits (243), Expect = 2.810e-21 Identity = 51/109 (46.79%), Postives = 73/109 (66.97%), Query Frame = 1 Query: 1 VTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLRVLRHDKSVLHPLRKLDHLKHIPDYLMPRGLQTGEDPTQRQRKRIKRARGGAKRRQGQGQDQGRRKDNDPLQTF 327 VT+ +VREARA ELK E++NS++L +F EN DL++LRHD+ + + LDHLKH+P YL+P+G+Q +R++K++K GG RRKDNDPLQ+F Sbjct: 484 VTKNTVREARANELKMELLNSERLESHFDENPADLQLLRHDRLATNVSKVLDHLKHVPKYLLPKGMQVANLNKKRKKKKVKHGTGGE-----------RRKDNDPLQSF 581
BLAST of mRNA_L-elsbetiae_contig17096.4739.1 vs. uniprot
Match: A0A7S1XW79_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW79_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 2.890e-21 Identity = 45/82 (54.88%), Postives = 65/82 (79.27%), Query Frame = 1 Query: 1 VTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLRVLRHDKSVLHPLRKLDHLKHIPDYLMPRGLQTGEDPT-QRQRKRIK 243 VT VS++EARAAELKAE++N+ +L YF EN DL++LRHDK+V+HP R +HL+ +P YL+P G+ GEDP+ ++ RKR++ Sbjct: 180 VTSVSIKEARAAELKAELLNNARLQAYFDENPQDLQLLRHDKAVMHPTRMQEHLRSVPGYLIPDGIDVGEDPSLKKYRKRLR 261
BLAST of mRNA_L-elsbetiae_contig17096.4739.1 vs. uniprot
Match: A0A448YUD8_9STRA (Uncharacterized protein n=5 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YUD8_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.170e-19 Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 1 Query: 1 VTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLRVLRHDKSVLHPLRKLDHLKHIPDYLMPRGLQTGEDPTQRQRKRIKRARGGAKRRQGQGQDQGRRKDNDPLQTFEASELGADGSYG 363 VT+ S++EARAAEL+AEI+NS++L +F++N DL++LRHD+ H + +HLKHIP YL+PRG+ + RKR KR G K+ RR DPLQ+F ++ DG G Sbjct: 500 VTKHSIKEARAAELRAEILNSERLQAHFEDNPNDLQLLRHDRLATHASKVQEHLKHIPKYLLPRGMHVAD----LNRKRKKRKNRGGKQ---------RRSAKDPLQSFSDGDVNLDGLEG 607 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17096.4739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig17096.4739.1 >prot_L-elsbetiae_contig17096.4739.1 ID=prot_L-elsbetiae_contig17096.4739.1|Name=mRNA_L-elsbetiae_contig17096.4739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp VTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLRVLRHDKSVLHPLRKback to top mRNA from alignment at L-elsbetiae_contig17096:850..3145- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig17096.4739.1 ID=mRNA_L-elsbetiae_contig17096.4739.1|Name=mRNA_L-elsbetiae_contig17096.4739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2296bp|location=Sequence derived from alignment at L-elsbetiae_contig17096:850..3145- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig17096:850..3145- >mRNA_L-elsbetiae_contig17096.4739.1 ID=mRNA_L-elsbetiae_contig17096.4739.1|Name=mRNA_L-elsbetiae_contig17096.4739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig17096:850..3145- (Laminarionema elsbetiae ELsaHSoW15)back to top |