mRNA_L-elsbetiae_contig1709.4734.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1709.4734.1 vs. uniprot
Match: D8LMZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ6_ECTSI) HSP 1 Score: 469 bits (1207), Expect = 4.710e-147 Identity = 355/750 (47.33%), Postives = 409/750 (54.53%), Query Frame = 1 Query: 154 ARQDFKIYMSKLLEHSAALEAFRPDARCVNAGDAGRGGPAWGPPLRGLDASEEGGSPGTSL--PKETGLADEPLVPDSPSYFREE-YPWPRAGAVTSPRPRPPPNFSWVAEPSTLGVGVRDGXXXXXXXXXTGR-SLFSASAPSLAAPSEGGGRRPDEHAAASRGRH------GGEEGVGDE----WKARWSRRLLRGPVHSEYQDRFPWPPPPQQAAAPEATGANYAPLTP----------GRGRXXXXXXXXXXXXXSRGGDAREDEGVEKFGARGASEPPRDRRAAAGSLAEVPPRNGRRPSPSVDAAXXXXXXXXXXXXXXXXXVAEYANGNKTATGRYAGGRVE-------------------GTVGATPAAPAVYLAGEEWQAGKEKAPPVEDAAVESRPLSGEVLGREVADHGERGSDRRCSRVSGGREWADGREHVSGDAKWPSKAVEAGSSPVEEANAAAAAA--VGGGEAWREQAAGRGEITVVSGRQTLDCSFQQSIVTEYMDEFSWPSTLPTPGRRGKRTGMGMDHVGRLLAGKRAEEP-RRTPDPGIVARLGAAADGALRAGSPGHLSEMCRLKSPSLACRRLVLGLVVALGLSWRRWGDIRSHLLGNKSELVGFLKRFDKNRSGLTSAALRPFAEDPSLSPAHVRRVAACTVWVSRWLRVLHKYLAAREG-DLDIDLDTGLDTASPFQTPSGAACSPR--RPRQSGRCRAHGTVLDSPPPGSAPERANKSRRAAAE 2256 AR+DFKIYM KLLEHS AL+ FRPD R +AGD G G PAWGP L SEEGGS G + P D + P SPS FREE + WPRAGAVT PRPRPPPNFSW+AEP + XXXXXXXXX R SL SA S AP+ GG R +A G G EE G+E WKA+WSRRL RGP+HSEYQDRFPWPP + N AP P G G XXXXXXXXXXXXX A+ PRD G + VD A ++G + TGR GG +E S + G EV H R S V +EW GR + D WPS+A + G S + +A V E WR +A GRGE+T +SG +TLD S QSI+TEYMDE++WPS+LP PGRRGKR+GMG+DHVGRLLAG+RAEEP R+ PDP +VARLGAAAD AL AGS GHLSEMCRLKSP LACRRL+LGLV+ALGL WRRW DIR+HLLGNK EL GFLKRF+K+R+GL S AL PF EDPSLSPA VRRVAAC VWV RWL LH YLA +EG +LD+D T FQ P+ + + R RQS CRAHGTV + PP A + R A E Sbjct: 3 ARKDFKIYMDKLLEHSTALDTFRPDKRHSDAGDTGSGVPAWGPSL---GMSEEGGSVGEARGSPPAGAAVDVTMPPFSPSRFREEKHAWPRAGAVTPPRPRPPPNFSWMAEPGSPASRXXXXXXXXXXXXXXARKSLSSADLASSPAPAAGGPRIKGGRLSADLGMDDGGRSWGAEEEEGEEDADAWKAQWSRRLSRGPIHSEYQDRFPWPPRSAFLGTVDDDAFNGAPPPPHPRGRRASARGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGYPRD----GGGVGGXXXXXXXXXXXXVDTAAAGRGGEGSP-----------SDGRRAGTGRLPGGDLEMAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSEQTSGLEVIGH----RTSRASSVYDEKEWEAGRGSEA-DGGWPSRAADVGGSSMAGGATLIGSAGDVAAAEVWRGEAVGRGEVTTMSGGRTLDFS-SQSILTEYMDEYAWPSSLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARKLPDPAVVARLGAAADRALGAGSLGHLSEMCRLKSPPLACRRLMLGLVIALGLRWRRWSDIRTHLLGNKPELQGFLKRFNKDRAGLASTALLPFVEDPSLSPAEVRRVAACMVWVPRWLHALHDYLAVKEGKELDVD------TMPMFQEPATSRSRAKLARRRQSSGCRAHGTVPGTVPPDGASKGREGRRPGAGE 722
BLAST of mRNA_L-elsbetiae_contig1709.4734.1 vs. uniprot
Match: A0A835YVY6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY6_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.840e-5 Identity = 68/233 (29.18%), Postives = 93/233 (39.91%), Query Frame = 1 Query: 1468 QAAGRGEITVVSGRQTLDCSFQQSIVTEYMDEFSWPSTLPTPGRRGKRTGMGMDHVGRLLAGKRAEEPRRTPDPGIVARLGAAA---DGALRAGSPGHLSEMCRLKSPSLACRRLVLGLVVALGLSWR-RWGDIRSHLLGNKSELVGFLKRFDKNRSGLTSAALRPFAEDPSLSPAHVRRVAACTVWVSRWLRVLHKYLAAREGDLDIDLDTGLDTASPFQTPSGAACSPRRP 2154 Q A R + GR D Q+S + E + ++ P G G+R D VG LL + P +LGA A D A A L+ +C L P A R LV G+V L R RW ++R+H+L N L F+K+ +T AAL F P + +A ++ WL+ LH Y A + G A P P AA P P Sbjct: 310 QRAARAKRHGTDGRPLHDGGPQRSAMYTAQGERACATSCPG-GAHGERE---EDSVGALLHARARLPPXXXXX--XXTQLGAFAASVDRAQAAVKGRDLAVLCALPRPPAAVRALVHGVVSLLAPHVRMRWEELRTHVLRNGYNFARLLDGFNKDAPAVTPAALA-FTTQRWAQPDFISGIATAARGLATWLQALHAYAAYKAGPT---------AALPLPPPMRAAPQPLTP 526 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1709.4734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1709.4734.1 >prot_L-elsbetiae_contig1709.4734.1 ID=prot_L-elsbetiae_contig1709.4734.1|Name=mRNA_L-elsbetiae_contig1709.4734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=847bp MLTGRAGCSQPQSIEQARQDFKIYMSKLLEHSAALEAFRPDARCVNAGDAback to top mRNA from alignment at L-elsbetiae_contig1709:324..9566- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1709.4734.1 ID=mRNA_L-elsbetiae_contig1709.4734.1|Name=mRNA_L-elsbetiae_contig1709.4734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9243bp|location=Sequence derived from alignment at L-elsbetiae_contig1709:324..9566- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1709:324..9566- >mRNA_L-elsbetiae_contig1709.4734.1 ID=mRNA_L-elsbetiae_contig1709.4734.1|Name=mRNA_L-elsbetiae_contig1709.4734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5082bp|location=Sequence derived from alignment at L-elsbetiae_contig1709:324..9566- (Laminarionema elsbetiae ELsaHSoW15)back to top |