mRNA_L-elsbetiae_contig1702.4703.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1702.4703.1
Unique NamemRNA_L-elsbetiae_contig1702.4703.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1702.4703.1 vs. uniprot
Match: A0A6H5KJX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX9_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 1.230e-48
Identity = 88/99 (88.89%), Postives = 91/99 (91.92%), Query Frame = 3 
Query:   90 QAVFELAKSEEFWALLTSVLIQDLSWDTRSRHAGGGGPAGRPLQGGGERGLDGAQTARLCSTLRCHAIVLQILALEMHRGLRPLGAAVLPPPLQAATLP 386
            QAVF LA SEEFW LLTSVLIQDLSWDTRSRHAGGGG AGRPLQGGGERGLDG QTARLC TLRCH+IVL+ILALEMHRGLRPLGAA LPPPL+AA LP
Sbjct:    2 QAVFALATSEEFWVLLTSVLIQDLSWDTRSRHAGGGGAAGRPLQGGGERGLDGRQTARLCHTLRCHSIVLEILALEMHRGLRPLGAAALPPPLKAAALP 100
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BLAST of mRNA_L-elsbetiae_contig1702.4703.1 vs. uniprot
Match: D7FGV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV4_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 7.970e-27
Identity = 61/78 (78.21%), Postives = 62/78 (79.49%), Query Frame = 3 
Query:    6 LAGGEEALVMALELVLALWRAEGVGRLGQAVFELAKSEEFWALLTSVLIQDLSWDTRSRHAGGGGPAGRPLQGGGERG 239
            LAGG E+LVMALELVL LW AEGVGRLGQAVF LA SEEFW LLTSVLIQDLSWDTRSRHAG  G  G    GGG  G
Sbjct:  422 LAGGSESLVMALELVLGLWHAEGVGRLGQAVFALATSEEFWVLLTSVLIQDLSWDTRSRHAGERGRRGATPSGGGGAG 499
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1702.4703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJX9_9PHAE1.230e-4888.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGV4_ECTSI7.970e-2778.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1702contigL-elsbetiae_contig1702:16147..18308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size387
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1702.4703.1prot_L-elsbetiae_contig1702.4703.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1702 16179..18308 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.9038613-UTR-L-elsbetiae_contig1702:16146..161781622815708.9038613-UTR-L-elsbetiae_contig1702:16146..16178Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1702 16147..16178 +
1691683051.479043-UTR-L-elsbetiae_contig1702:16146..161781691683051.479043-UTR-L-elsbetiae_contig1702:16146..16178Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1702 16147..16178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.9142392-CDS-L-elsbetiae_contig1702:16178..162381622815708.9142392-CDS-L-elsbetiae_contig1702:16178..16238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1702 16179..16238 +
1691683051.4923716-CDS-L-elsbetiae_contig1702:16178..162381691683051.4923716-CDS-L-elsbetiae_contig1702:16178..16238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1702 16179..16238 +
1622815708.9300349-CDS-L-elsbetiae_contig1702:17421..176311622815708.9300349-CDS-L-elsbetiae_contig1702:17421..17631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1702 17422..17631 +
1691683051.5041215-CDS-L-elsbetiae_contig1702:17421..176311691683051.5041215-CDS-L-elsbetiae_contig1702:17421..17631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1702 17422..17631 +
1622815708.9399047-CDS-L-elsbetiae_contig1702:18224..183081622815708.9399047-CDS-L-elsbetiae_contig1702:18224..18308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1702 18225..18308 +
1691683051.512636-CDS-L-elsbetiae_contig1702:18224..183081691683051.512636-CDS-L-elsbetiae_contig1702:18224..18308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1702 18225..18308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1702.4703.1

>prot_L-elsbetiae_contig1702.4703.1 ID=prot_L-elsbetiae_contig1702.4703.1|Name=mRNA_L-elsbetiae_contig1702.4703.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MALELVLALWRAEGVGRLGQAVFELAKSEEFWALLTSVLIQDLSWDTRSR
HAGGGGPAGRPLQGGGERGLDGAQTARLCSTLRCHAIVLQILALEMHRGL
RPLGAAVLPPPLQAATLP
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mRNA from alignment at L-elsbetiae_contig1702:16147..18308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1702.4703.1 ID=mRNA_L-elsbetiae_contig1702.4703.1|Name=mRNA_L-elsbetiae_contig1702.4703.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2162bp|location=Sequence derived from alignment at L-elsbetiae_contig1702:16147..18308+ (Laminarionema elsbetiae ELsaHSoW15)
ACGTCCTCGCCGGCGGCGAAGAGGCGCTGGTCATGGCTCTCGAGCTGGTG
CTGGCGCTGTGGCGCGCGGAAGGGGTTGGCCGGCTTGGACAGGTATACCT
ACCGTAATTCGCTCTATGTACCCCCCCCCCCCCGCCCCCCCCGGGGTTTT
GGGTCCCCCCCCATCGTTTCGGCCTAGAACCTAGAAGCATGATTTATCCG
TGTCCCCCTCGGAGGTTTCCCTCGGGGGGGTTGTTTGTTTCACAGAAAAA
AATGACCCCCCGGGGCTTAGAGCGGATTACGGTATACATTTGGTCATACA
TTTCACAGAAAAAACGACCCCCCACTCACCCACCCACCCCCCGGATAAAG
AGCGAACTACGGTATATATTTGGTCATACAGCAAGCAATATCATCATATG
GTTCGTTGCTGCATGGGAATTGGGGTTGACGGTGGTGGTTGCGGCCAGGG
CTGGCTATTGTAGAGAGTCAGTCTTTTTTTTTTTTGTCTCGTTCAGATTT
ATTTCCAGTGCTCGATGGGCTCCTCGCCATGAGTCACTACATGTGTGCTT
TTGTTGTCTGGTGCACCATGGCAACTCCGCGTGGTGTTTATTTTCGAGTT
TGCCATGAAAGGGCTACCGTGGGTGACACAAGATACCACACCCCCTGGAC
ATATTTTAAAGCTCGATTCCTCCCCAGCAGGAAGAAAGCCGGTGCCGAAA
AGGGGGTAGCGTTGGAAAGATCTAGTCGAGGGCTGTCTGAAAATGTGTCG
TTTGGTGCTGGCATCGTCTTTGTTACGGAGCAGTAGAGCTCTCAACGTCG
GTCCAGGGGGGTTGGTATCCTGTGTCACCTACGGTAGTCTATCTGCTCAC
ACGCACCAGACCAAGGCCACTCGTGCTGCCTTGCGCATCACAACTCGACG
GCTTAACACGCTTGTGTCTGTTTTAGCGTGTCCTTGCTTTCCTGACCCTT
CGGGTCCATTTTATTTTTTCAGTAAATATTCCCTTTCTAAGCTAAGTCAG
CCTGCGACCACGGGACTGTCAGTTTTGGATTAGTGCACACCTAAATACCG
ACAGACGCAGGCTACTACTGGAAAGAGAGATCGGAACCGTTTTTAACGTC
AAGACATCAACATCAACACCAGCAACAATAACAATAACAACATCAGCATC
AACAACAACGCTCCGTGACTTCTTGACGCCGCGCTTTTCGCGCTCTTATG
CCCGCATTGATTTCTCGGTGCTGATCTGCGGTCCCCCCCCCCCCCACCCA
CCCTCCCCGTCCCCGCGCCTTGCAGGCGGTATTTGAGCTGGCCAAGAGCG
AAGAGTTCTGGGCCCTGCTGACCTCGGTGCTCATCCAGGACCTCTCGTGG
GACACAAGGTCGAGGCACGCCGGCGGCGGGGGCCCGGCTGGACGGCCTCT
TCAGGGCGGCGGGGAGCGAGGCCTCGACGGTGCCCAGACGGCGCGCCTTT
GCAGCACGCTCCGGTGCCACGCGATTGTGCTCCAGGTAGGACGGGGGGGG
GCGGGGGTGGGGGTCGTCACGCGTGCGGTAGGACCGTAGAGGTGTGTGTG
TGTGTGTGTGTGTGTTGTGTGCGTGTGCTTTGTGTGTGCGTGTGTGTGTG
TGCGTGTATTTTGTTTACATATGTGTGTGTGTATTCACTGTCGTTGGAGT
TCTTGGCTACTGGGGGCGTATATCTAAAGGATGTATGGAGTCATGAATAG
AGTGTGTTCATTTTATTCTAAAATGAGGGTCCCTTGGTTTTGATTTTATC
GCGGGGTGTCCACTGTTGGACTGAAATCTGCGGTGCCGCTCCTTGCTCGT
CAACGATATTCGGCCGCAGTTTGACCGGTGCGTTGCCAAGGGCCGGCAAG
GCCAAGGCATCGCTGCGACCTTGCTCTTGCTTCGCTTCCCAGGATGTTTG
ATGATACCCTTTGACACTTTGCGGCCTTACTCTTGCTTCGCTTCCCAGGA
TGGTTGATGACACCTTGTGACACTCGATGACACTCGATGGCACTTGGTGG
CACTCTTGGCTGCCGCATGTACGTCACCCCCCCCCCCCTCTTTCCCCCTT
GTCCCCATCCCTTGTCTTGGGTGGACAGATTCTCGCCCTCGAGATGCACA
GGGGTCTGCGCCCGCTCGGCGCGGCCGTGCTTCCGCCCCCGCTCCAGGCT
GCCACACTGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1702:16147..18308+

>mRNA_L-elsbetiae_contig1702.4703.1 ID=mRNA_L-elsbetiae_contig1702.4703.1|Name=mRNA_L-elsbetiae_contig1702.4703.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig1702:16147..18308+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCTCGAGCTGGTGCTGGCGCTGTGGCGCGCGGAAGGGGTTGGCCG
GCTTGGACAGATGGCTCTCGAGCTGGTGCTGGCGCTGTGGCGCGCGGAAG
GGGTTGGCCGGCTTGGACAGGCGGTATTTGAGCTGGCCAAGAGCGAAGAG
TTCTGGGCCCTGCTGACCTCGGTGCTCATCCAGGACCTCTCGTGGGACAC
AAGGTCGAGGCACGCCGGCGGCGGGGGCCCGGCTGGACGGCCTCTTCAGG
GCGGCGGGGAGCGAGGCCTCGACGGTGCCCAGACGGCGCGCCTTTGCAGC
ACGCTCCGGTGCCACGCGATTGTGCTCCAGGCGGTATTTGAGCTGGCCAA
GAGCGAAGAGTTCTGGGCCCTGCTGACCTCGGTGCTCATCCAGGACCTCT
CGTGGGACACAAGGTCGAGGCACGCCGGCGGCGGGGGCCCGGCTGGACGG
CCTCTTCAGGGCGGCGGGGAGCGAGGCCTCGACGGTGCCCAGACGGCGCG
CCTTTGCAGCACGCTCCGGTGCCACGCGATTGTGCTCCAGATTCTCGCCC
TCGAGATGCACAGGGGTCTGCGCCCGCTCGGCGCGGCCGTGCTTCCGCCC
CCGCTCCAGGCTGCCACACTGCCGATTCTCGCCCTCGAGATGCACAGGGG
TCTGCGCCCGCTCGGCGCGGCCGTGCTTCCGCCCCCGCTCCAGGCTGCCA
CACTGCCG
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