mRNA_L-elsbetiae_contig16937.4650.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16937.4650.1
Unique NamemRNA_L-elsbetiae_contig16937.4650.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16937.4650.1 vs. uniprot
Match: D7G3X8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3X8_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 8.700e-13
Identity = 45/73 (61.64%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    4 ERHARAAAGKARFYTGPAESGRGTAAXXXXXXXXDGNNAAAN-VWKPTPEELEEERLLQESLPAAYGGSSTSP 219
            ERHARAAAG++RFY GPA+S   +           G  AAA+ VW  TPEELEEERLL+ESLPAAYG SS SP
Sbjct:  141 ERHARAAAGQSRFYGGPADSSGASGGAGDEASRHGGPLAAASAVWGATPEELEEERLLRESLPAAYGDSSPSP 213
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16937.4650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3X8_ECTSI8.700e-1361.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16937contigL-elsbetiae_contig16937:521..984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue8.4e-12
Seed eggNOG ortholog2880.D7G3X8
Preferred nameSTX18
KEGG koko:K08492
KEGG Pathwayko04130,ko04145,map04130,map04145
Hectar predicted targeting categoryother localisation
GOsGO:0000149,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005938,GO:0006810,GO:0006888,GO:0006890,GO:0006996,GO:0007029,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007528,GO:0008150,GO:0009987,GO:0010256,GO:0010638,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0019904,GO:0023052,GO:0031201,GO:0031594,GO:0031984,GO:0032386,GO:0032388,GO:0032879,GO:0032991,GO:0033043,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045202,GO:0046907,GO:0048193,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050808,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060341,GO:0060627,GO:0060628,GO:0061024,GO:0061025,GO:0065007,GO:0071840,GO:0071944,GO:0090158,GO:0098796,GO:0098827,GO:0098916,GO:0099536,GO:0099537,GO:0099568,GO:1902115,GO:1902117,GO:1902953,GO:1903358
EggNOG free text desc.positive regulation of ER to Golgi vesicle-mediated transport
EggNOG OGsKOG3894@1,KOG3894@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size466
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.5891423-CDS-L-elsbetiae_contig16937:520..9821622815703.5891423-CDS-L-elsbetiae_contig16937:520..982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16937 521..982 +
1691683048.306302-CDS-L-elsbetiae_contig16937:520..9821691683048.306302-CDS-L-elsbetiae_contig16937:520..982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16937 521..982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16937.4650.1prot_L-elsbetiae_contig16937.4650.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16937 521..982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16937.4650.1

>prot_L-elsbetiae_contig16937.4650.1 ID=prot_L-elsbetiae_contig16937.4650.1|Name=mRNA_L-elsbetiae_contig16937.4650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
AERHARAAAGKARFYTGPAESGRGTAAAAAAAVAGDGNNAAANVWKPTPE
ELEEERLLQESLPAAYGGSSTSPDLPPGDGDVDAAGGAPATVVSRRPRIP
PETPPSPLTPSPAAAEVTGGGAAQLRPAAAEGRRRRAQEGAPPRSGVQRR
GREQ
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mRNA from alignment at L-elsbetiae_contig16937:521..984+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16937.4650.1 ID=mRNA_L-elsbetiae_contig16937.4650.1|Name=mRNA_L-elsbetiae_contig16937.4650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=464bp|location=Sequence derived from alignment at L-elsbetiae_contig16937:521..984+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGAGAGACACGCGAGAGCGGCAGCCGGCAAAGCGCGCTTCTACACCGG
TCCGGCAGAGAGCGGCAGAGGCACCGCAGCGGCGGCGGCGGCAGCGGTGG
CAGGCGACGGTAACAATGCCGCCGCGAACGTCTGGAAACCCACCCCGGAA
GAGCTGGAAGAGGAGCGCTTGCTTCAAGAATCTCTCCCGGCGGCGTACGG
GGGCTCCTCCACTTCCCCGGACCTCCCGCCTGGGGACGGTGATGTTGATG
CCGCGGGTGGCGCCCCTGCCACCGTTGTTTCACGCCGCCCGCGAATACCA
CCTGAAACGCCCCCGTCTCCGTTGACGCCGTCGCCGGCGGCGGCGGAGGT
AACCGGCGGCGGGGCGGCCCAGCTCCGACCAGCGGCCGCAGAGGGGAGGC
GAAGAAGAGCGCAAGAAGGGGCCCCGCCGCGGAGTGGCGTCCAACGAAGG
GGGAGGGAGCAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16937:521..984+

>mRNA_L-elsbetiae_contig16937.4650.1 ID=mRNA_L-elsbetiae_contig16937.4650.1|Name=mRNA_L-elsbetiae_contig16937.4650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig16937:521..984+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGAGAGACACGCGAGAGCGGCAGCCGGCAAAGCGCGCTTCTACACCGG
TCCGGCAGAGAGCGGCAGAGGCACCGCAGCGGCGGCGGCGGCAGCGGTGG
CAGGCGACGGTAACAATGCCGCCGCGAACGTCTGGAAACCCACCCCGGAA
GAGCTGGAAGAGGAGCGCTTGCTTCAAGAATCTCTCCCGGCGGCGTACGG
GGGCTCCTCCACTTCCCCGGACCTCCCGCCTGGGGACGGTGATGTTGATG
CCGCGGGTGGCGCCCCTGCCACCGTTGTTTCACGCCGCCCGCGAATACCA
CCTGAAACGCCCCCGTCTCCGTTGACGCCGTCGCCGGCGGCGGCGGAGGT
AACCGGCGGCGGGGCGGCCCAGCTCCGACCAGCGGCCGCAGAGGGGAGGC
GAAGAAGAGCGCAAGAAGGGGCCCCGCCGCGGAGTGGCGTCCAACGAAGG
GGGAGGGAGCAGGCCGAGAGACACGCGAGAGCGGCAGCCGGCAAAGCGCG
CTTCTACACCGGTCCGGCAGAGAGCGGCAGAGGCACCGCAGCGGCGGCGG
CGGCAGCGGTGGCAGGCGACGGTAACAATGCCGCCGCGAACGTCTGGAAA
CCCACCCCGGAAGAGCTGGAAGAGGAGCGCTTGCTTCAAGAATCTCTCCC
GGCGGCGTACGGGGGCTCCTCCACTTCCCCGGACCTCCCGCCTGGGGACG
GTGATGTTGATGCCGCGGGTGGCGCCCCTGCCACCGTTGTTTCACGCCGC
CCGCGAATACCACCTGAAACGCCCCCGTCTCCGTTGACGCCGTCGCCGGC
GGCGGCGGAGGTAACCGGCGGCGGGGCGGCCCAGCTCCGACCAGCGGCCG
CAGAGGGGAGGCGAAGAAGAGCGCAAGAAGGGGCCCCGCCGCGGAGTGGC
GTCCAACGAAGGGGGAGGGAGCAG
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