mRNA_L-elsbetiae_contig16901.4628.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16901.4628.1
Unique NamemRNA_L-elsbetiae_contig16901.4628.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16901.4628.1 vs. uniprot
Match: A0A6H5L2J9_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J9_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.080e-10
Identity = 103/205 (50.24%), Postives = 110/205 (53.66%), Query Frame = 2 
Query:   29 MHLYLWASLAGSCLLRPGFSLIGKDGQGRKCSSQQHPAPRSSN-SXXXXXXXXXXXVMAAFVAAPPLM----ERYGGRSLPGTTA------IADSRHQHLPGPVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPS--WRLCAARVNTDDDDY--FSDRGRTDPPAPAQRSGRPAVRGNNGGXXXXXXXRPGSGAGRGVAVR 598
            MHLYLWASLAGSCLL PG SL+G    G  CS +      S   SXXXXXXXXXXX        PP +    +R G    PGTT       +A  + Q        XXXXXXXXXXXXXXXXXXXX          PPS  WRL AAR    D     + DRGRTDPP  A   GRP VRGN          RPGSGAGRGV  R
Sbjct:    1 MHLYLWASLAGSCLLHPGLSLLGGGDGG--CSGENGVGIDSRRRSXXXXXXXXXXXXXXXXXXXPPRLLARSQRSGRLYSPGTTEMTLTGLVATRQQQCSXXXXXXXXXXXXXXXXXXXXXXXXXXSTPRSRVLPLPPSPSWRLYAARRANPDXXXXXYDDRGRTDPPTVAP--GRPPVRGNA--PASRARGRPGSGAGRGVGGR 199
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16901.4628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2J9_9PHAE6.080e-1050.24SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16901contigL-elsbetiae_contig16901:2403..3087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size686
Cds size657
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.2298481-UTR-L-elsbetiae_contig16901:2402..24301622815702.2298481-UTR-L-elsbetiae_contig16901:2402..2430Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16901 2403..2430 +
1691683047.4564712-UTR-L-elsbetiae_contig16901:2402..24301691683047.4564712-UTR-L-elsbetiae_contig16901:2402..2430Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16901 2403..2430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.2439601-CDS-L-elsbetiae_contig16901:2430..30871622815702.2439601-CDS-L-elsbetiae_contig16901:2430..3087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16901 2431..3087 +
1691683047.4738655-CDS-L-elsbetiae_contig16901:2430..30871691683047.4738655-CDS-L-elsbetiae_contig16901:2430..3087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16901 2431..3087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16901.4628.1prot_L-elsbetiae_contig16901.4628.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16901 2431..3087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16901.4628.1

>prot_L-elsbetiae_contig16901.4628.1 ID=prot_L-elsbetiae_contig16901.4628.1|Name=mRNA_L-elsbetiae_contig16901.4628.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=219bp
MHLYLWASLAGSCLLRPGFSLIGKDGQGRKCSSQQHPAPRSSNSRRRAPT
TTSTSVMAAFVAAPPLMERYGGRSLPGTTAIADSRHQHLPGPVAAAAAAG
AAVAAGQRIMLTPTTARTRLQQPQPPPSWRLCAARVNTDDDDYFSDRGRT
DPPAPAQRSGRPAVRGNNGGGGGRGGGRPGSGAGRGVAVRAGPSSGRGID
QNDPLVRDWQSAKVLAGKG
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mRNA from alignment at L-elsbetiae_contig16901:2403..3087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16901.4628.1 ID=mRNA_L-elsbetiae_contig16901.4628.1|Name=mRNA_L-elsbetiae_contig16901.4628.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=685bp|location=Sequence derived from alignment at L-elsbetiae_contig16901:2403..3087+ (Laminarionema elsbetiae ELsaHSoW15)
GACCAACAGTACTGCTGTGCGTGCTGTCATGCACCTCTATCTCTGGGCCT
CCCTTGCGGGATCTTGCCTCCTCCGTCCAGGATTCTCCTTGATCGGCAAA
GATGGCCAAGGGAGAAAATGCAGCAGCCAGCAGCACCCGGCCCCACGCTC
GAGCAACAGCCGCCGACGTGCACCGACGACAACGTCAACGAGCGTCATGG
CTGCCTTTGTAGCAGCACCGCCACTCATGGAACGGTATGGTGGGAGAAGC
TTGCCCGGGACCACTGCTATCGCTGACTCGCGGCACCAGCATCTCCCCGG
CCCAGTAGCAGCAGCAGCAGCAGCAGGAGCAGCAGTAGCAGCAGGGCAAC
GCATCATGCTCACTCCCACCACCGCACGCACTCGCCTGCAGCAACCGCAA
CCCCCGCCGTCGTGGCGCCTCTGCGCCGCCCGCGTGAACACCGATGACGA
CGACTACTTCAGCGATCGCGGCCGCACCGACCCGCCCGCTCCGGCCCAGC
GATCCGGTCGCCCGGCAGTAAGAGGCAACAACGGCGGCGGCGGCGGCCGG
GGAGGCGGTAGGCCGGGATCGGGGGCAGGCCGTGGCGTCGCCGTGCGGGC
GGGTCCCAGCAGCGGGAGAGGCATAGACCAGAACGACCCGCTCGTGAGGG
ACTGGCAATCTGCCAAGGTGCTGGCGGGGAAAGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16901:2403..3087+

>mRNA_L-elsbetiae_contig16901.4628.1 ID=mRNA_L-elsbetiae_contig16901.4628.1|Name=mRNA_L-elsbetiae_contig16901.4628.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1314bp|location=Sequence derived from alignment at L-elsbetiae_contig16901:2403..3087+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCTCTATCTCTGGGCCTCCCTTGCGGGATCTTGCCTCCTCCGTCC
AGGATTCTCCTTGATCGGCAAAGATGGCCAAGGGAGAAAATGCAGCAGCC
AGCAGCACCCGGCCCCACGCTCGAGCAACAGCCGCCGACGTGCACCGACG
ACAACGTCAACGAGCGTCATGGCTGCCTTTGTAGCAGCACCGCCACTCAT
GGAACGGTATGGTGGGAGAAGCTTGCCCGGGACCACTGCTATCGCTGACT
CGCGGCACCAGCATCTCCCCGGCCCAGTAGCAGCAGCAGCAGCAGCAGGA
GCAGCAGTAGCAGCAGGGCAACGCATCATGCTCACTCCCACCACCGCACG
CACTCGCCTGCAGCAACCGCAACCCCCGCCGTCGTGGCGCCTCTGCGCCG
CCCGCGTGAACACCGATGACGACGACTACTTCAGCGATCGCGGCCGCACC
GACCCGCCCGCTCCGGCCCAGCGATCCGGTCGCCCGGCAGTAAGAGGCAA
CAACGGCGGCGGCGGCGGCCGGGGAGGCGGTAGGCCGGGATCGGGGGCAG
GCCGTGGCGTCGCCGTGCGGGCGGGTCCCAGCAGCGGGAGAGGCATAGAC
CAGAACGACCCGCTCGTGAGGGACTGGCAATCTGCCAAGGTGCTGGCGGG
GAAAGGAATGCACCTCTATCTCTGGGCCTCCCTTGCGGGATCTTGCCTCC
TCCGTCCAGGATTCTCCTTGATCGGCAAAGATGGCCAAGGGAGAAAATGC
AGCAGCCAGCAGCACCCGGCCCCACGCTCGAGCAACAGCCGCCGACGTGC
ACCGACGACAACGTCAACGAGCGTCATGGCTGCCTTTGTAGCAGCACCGC
CACTCATGGAACGGTATGGTGGGAGAAGCTTGCCCGGGACCACTGCTATC
GCTGACTCGCGGCACCAGCATCTCCCCGGCCCAGTAGCAGCAGCAGCAGC
AGCAGGAGCAGCAGTAGCAGCAGGGCAACGCATCATGCTCACTCCCACCA
CCGCACGCACTCGCCTGCAGCAACCGCAACCCCCGCCGTCGTGGCGCCTC
TGCGCCGCCCGCGTGAACACCGATGACGACGACTACTTCAGCGATCGCGG
CCGCACCGACCCGCCCGCTCCGGCCCAGCGATCCGGTCGCCCGGCAGTAA
GAGGCAACAACGGCGGCGGCGGCGGCCGGGGAGGCGGTAGGCCGGGATCG
GGGGCAGGCCGTGGCGTCGCCGTGCGGGCGGGTCCCAGCAGCGGGAGAGG
CATAGACCAGAACGACCCGCTCGTGAGGGACTGGCAATCTGCCAAGGTGC
TGGCGGGGAAAGGA
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