mRNA_L-elsbetiae_contig16827.4585.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16827.4585.1
Unique NamemRNA_L-elsbetiae_contig16827.4585.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16827.4585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16827contigL-elsbetiae_contig16827:862..2251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size254
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.795782-CDS-L-elsbetiae_contig16827:861..9681622815698.795782-CDS-L-elsbetiae_contig16827:861..968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16827 862..968 +
1691683045.3992496-CDS-L-elsbetiae_contig16827:861..9681691683045.3992496-CDS-L-elsbetiae_contig16827:861..968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16827 862..968 +
1622815698.8096743-CDS-L-elsbetiae_contig16827:2104..22491622815698.8096743-CDS-L-elsbetiae_contig16827:2104..2249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16827 2105..2249 +
1691683045.4151978-CDS-L-elsbetiae_contig16827:2104..22491691683045.4151978-CDS-L-elsbetiae_contig16827:2104..2249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16827 2105..2249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16827.4585.1prot_L-elsbetiae_contig16827.4585.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16827 862..2249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16827.4585.1

>prot_L-elsbetiae_contig16827.4585.1 ID=prot_L-elsbetiae_contig16827.4585.1|Name=mRNA_L-elsbetiae_contig16827.4585.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
GGGGGGGGPREKFLAFVRDLRMDVKTVECRLYSRSIRVDEEDDEREPAAP
RRGWLAWIGLGGGGRSGRASSSSSSSSSGGSEAA
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mRNA from alignment at L-elsbetiae_contig16827:862..2251+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16827.4585.1 ID=mRNA_L-elsbetiae_contig16827.4585.1|Name=mRNA_L-elsbetiae_contig16827.4585.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1390bp|location=Sequence derived from alignment at L-elsbetiae_contig16827:862..2251+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGGGGGGGGGGGGGGGGGCCCGCGGGAGAAGTTCTTGGCGTTCGT
GCGAGACCTGAGGATGGACGTGAAGACGGTCGAATGCCGTCTGTACTCGC
GGTCGATGTGAGTGTTAAATATGTACATATGCAGCCCTTTTTTTTTCTCT
TTTTTTTTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTCTTTTTTTTTCTTTGTTTTCTTTTTTTTTTTTCTTTGTACAC
CATTTTNNNNNNNNNNGGGGGGGGGGGTGGGGGGGGGGGTGGTCGGGGGC
CGTCTGTGCGCGGGGTGGGTGTGAGTGTTAAATATGTACATATGCAGCCC
TTTTTTTTTCTCTTTTTTTTTCTCTTTTTTTTTTTTTCATTTTTTTTCTT
TTTTGTCGTTTTCGGCTGCTTCAAAAACTAACGCTGCTTGCTTGCTTGTA
TGCATCACAGCAGCAGTAGCAAAAGCGGCACGCGCACGCGCACGCCCCCG
AGTTTCGCGCGCGCGCGCGTGCCAAGATCTATTAATCCAGCCAGCCATTC
GTCCATTCGCGTTGGGCAGTCGGTGCTGCTGGATTGAATTGATTTACGGG
GGCGAGAGCCGAGCCGAAAGGCGATTTATTCTGCCAGAGAGTAAACGGGA
GAGTCTCAGTTATCGTTGAAGCTTGCTCGGAGTACGCACGTACGTAGGGG
GGTGGTTTGCATGGATAGGGCACACGTTTGGGAGAGACGATCAGCCGCCG
CAAGCATGATGGTGGGGGGGGTAGAGAAGCGGTATACAGTAGCCAGGATT
CTCCACAAGGCCTACGTAGTTCAGAAAGATCCTTCATCGTATCTCGACCA
AAGATTGCACGCCGATCAGTCGGCGGAGAGGATCCCGAGAGCCCTCCCCT
GTATATCTCTCTTCAGAGAAATTGGCCACAATTCACCCATCGATTCCCCA
CGGGTGTCACCCATGGGGGCACCGTGGATGACGCCACCCGTCGCCCAAGG
ATCTTCAGTAGTGCCTGTATTTTGAAATTCCGCCGCAGGCGTGTTGACCA
ATCAGCGAATTGCGTGCCACAAAACCTTTTCTCTCTCTGGGGTTAGGGTC
CTCGGCTTGGCCTGTTGACGTTTTTGCCAAAAGAGACTACTGCTGTGGCG
GCCGCTACTTTAACAACTACTACTGCTGCTGTGTCTCGTCCTGCAACCGC
ACGCACAACAAACCCACGCACGCACGCACGCACGCACGCGTAGACGCGTT
GACGAGGAGGACGACGAGAGAGAGCCGGCCGCTCCCAGAAGAGGGTGGTT
GGCATGGATCGGGCTGGGCGGTGGTGGCCGCTCCGGCAGAGCGTCGTCGT
CGTCGTCGTCGTCATCGTCGGGTGGCTCTGAAGCCGCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16827:862..2251+

>mRNA_L-elsbetiae_contig16827.4585.1 ID=mRNA_L-elsbetiae_contig16827.4585.1|Name=mRNA_L-elsbetiae_contig16827.4585.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig16827:862..2251+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGGGGGGGGGGGGGGGGGCCCGCGGGAGAAGTTCTTGGCGTTCGT
GCGAGACCTGAGGATGGACGTGAAGACGGTCGAATGCCGTCTGTACTCGC
GGTCGATGGCGGCGGGGGGGGGGGGGGGGGCCCGCGGGAGAAGTTCTTGG
CGTTCGTGCGAGACCTGAGGATGGACGTGAAGACGGTCGAATGCCGTCTG
TACTCGCGGTCGATACGCGTTGACGAGGAGGACGACGAGAGAGAGCCGGC
CGCTCCCAGAAGAGGGTGGTTGGCATGGATCGGGCTGGGCGGTGGTGGCC
GCTCCGGCAGAGCGTCGTCGTCGTCGTCGTCGTCATCGTCGGGTGGCTCT
GAAGCCGCCACGCGTTGACGAGGAGGACGACGAGAGAGAGCCGGCCGCTC
CCAGAAGAGGGTGGTTGGCATGGATCGGGCTGGGCGGTGGTGGCCGCTCC
GGCAGAGCGTCGTCGTCGTCGTCGTCGTCATCGTCGGGTGGCTCTGAAGC
CGCC
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