mRNA_L-elsbetiae_contig10466.458.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10466.458.1
Unique NamemRNA_L-elsbetiae_contig10466.458.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10466.458.1 vs. uniprot
Match: D8LQE2_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE2_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.230e-39
Identity = 75/124 (60.48%), Postives = 92/124 (74.19%), Query Frame = 1
Query:   10 SPRREDH-TQIDGFELDIFKLVREHATFEQWGEWLRAPLEHAATKGDMDLFTRLIDAGADGSAGWRGCHGRTLLGAAAYGK-SDKIVRALLQAGAKPDVN*R---------EVRHEAGVGTSCT 348
            +P+R+ H +++DGFE++IFKLV+E A  EQW +W RAPLEHA  +G++DLFTRL+DAGADG AGWRGCHGRTLLGAAA G  SDK+VRALL+AGA+ DVN R          V    G   SCT
Sbjct:    3 APKRKGHRSRLDGFEIEIFKLVKEEAAPEQWKQWFRAPLEHATARGNLDLFTRLMDAGADGEAGWRGCHGRTLLGAAACGNNSDKMVRALLEAGARRDVNVRFGNTNESTLHVSAARGAEASCT 126          
BLAST of mRNA_L-elsbetiae_contig10466.458.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.330e-34
Identity = 65/94 (69.15%), Postives = 80/94 (85.11%), Query Frame = 1
Query:   22 EDHTQIDGFELDIFKLVREHATFEQWGEWLRAPLEHAATKGDMDLFTRLIDAGADGSAGWRGCHGRTLLGAAAYGKSDKIVRALLQAGAKPDVN 303
            ED +++ GFE++IFKL+R  AT EQW EWLRAPLEHAA +G++DLFTRL+DAGA+  AGWRGCHGRTLLGAAA G+S+K++R LL AGA  DVN
Sbjct:    9 EDRSRLVGFEIEIFKLLRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANTEAGWRGCHGRTLLGAAALGRSEKMIRTLLTAGATDDVN 102          
BLAST of mRNA_L-elsbetiae_contig10466.458.1 vs. uniprot
Match: D7G6Z7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z7_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.770e-34
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1
Query:   58 IFKLVREHATFEQWGEWLRAPLEHAATKGDMDLFTRLIDAGADGSAGWRGCHGRTLLGAAAYGKSDKIVRALLQAGAKPDVN 303
            IFKLV+E AT EQW +WLR PLEHAA KG++DLFTRL+DAGADG +GWRGC+GRTLLGAAA G  D++VRALL+AGA  DVN
Sbjct:    4 IFKLVQEEATPEQWKQWLRVPLEHAAAKGNLDLFTRLMDAGADGCSGWRGCYGRTLLGAAACGDGDQMVRALLEAGATDDVN 85          
BLAST of mRNA_L-elsbetiae_contig10466.458.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 3.360e-34
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:    4 SASPRREDHTQIDGFELDIFKLVREHATFEQWGEWLRAPLEHAATKGDMDLFTRLIDAGADGSAGWRGCHGRTLLGAAAYGKSDKIVRALLQAGAKPDVN 303
            +AS + +D T++DGFE++IFKLV+  AT +QW EWLRAPLEHAA  G++ LFTRL+DAGA   AGWRGC GRTLLGAAA  K+ KI+RALL AGAK DVN
Sbjct:    5 AASQQSQDRTRVDGFEVEIFKLVQREATSKQWKEWLRAPLEHAAASGNLGLFTRLMDAGASAEAGWRGCDGRTLLGAAACSKNKKILRALLTAGAKSDVN 104          
BLAST of mRNA_L-elsbetiae_contig10466.458.1 vs. uniprot
Match: A0A6H5KQY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY9_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 3.560e-34
Identity = 68/103 (66.02%), Postives = 81/103 (78.64%), Query Frame = 1
Query:    1 MSASPRREDHTQIDGFELDIFKLVREHATFEQWGEWLRAPLEHAATKGDMDLFTRLIDAGADGSAGWRGCHGRTLLGAAAYGKSDKIVRALLQAGAKPDVN*R 309
            MS S +RED +++DGFE+ IFKLV+   T EQW +WL APL HAA KG +DLFTRLI+AGADGSAGWRGCHGRTLLG AA    +++VRA L+AGA  DVN R
Sbjct:    1 MSGS-KREDRSRVDGFEMKIFKLVQAEETPEQWKKWLGAPLNHAAAKGKLDLFTRLINAGADGSAGWRGCHGRTLLGEAARSDGNQMVRAFLEAGATDDVNVR 102          
BLAST of mRNA_L-elsbetiae_contig10466.458.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 7.790e-34
Identity = 65/99 (65.66%), Postives = 82/99 (82.83%), Query Frame = 1
Query:   10 SPRREDHTQIDGFELDIFKLVREHATFEQWGEWLRAPLEHAATKGDMDLFTRLIDAGA-DGSAGWRGCHGRTLLGAAAYGKSDKIVRALLQAGAKPDVN 303
            S R +  +++DGFE++IFKLV+E  T EQW +WL+ PLEHAA +G++DLFTRL+DAG   G  GWRGC+GRTLLGAAA+GKSDK+VRALL+AGA  DVN
Sbjct:    6 SKREDGRSRLDGFEIEIFKLVQEEVTSEQWKQWLQVPLEHAAARGNLDLFTRLMDAGGFGGERGWRGCNGRTLLGAAAWGKSDKVVRALLEAGAGDDVN 104          
BLAST of mRNA_L-elsbetiae_contig10466.458.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.430e-33
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 1
Query:    1 MSASPRRE-DHTQIDGFELDIFKLVREHATFEQWGEWLRAPLEHAATKGDMDLFTRLIDAGADGSAGWRGCHGRTLLGAAAYGKSDKIVRALLQAGAKPDVN 303
            M  S R E D +++DGFE++IFKLV+  AT EQW EWLRAP EHAA +G++D FTRL+DAGA+  AGWRGC+GRTLLGAAA+G+S+K+VR  L AGA  DVN
Sbjct:    1 MPGSKREEEDRSRLDGFEIEIFKLVQRGATSEQWKEWLRAPREHAAAEGNLDFFTRLMDAGANAGAGWRGCNGRTLLGAAAFGRSEKMVRTTLTAGATDDVN 102          
BLAST of mRNA_L-elsbetiae_contig10466.458.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.850e-33
Identity = 67/90 (74.44%), Postives = 78/90 (86.67%), Query Frame = 1
Query:   37 IDGFELDIFKLVREHATFEQWGEWLRAPLEHAATKGDMDLFTRLIDAGADGSAGWRGCHGRTLLGAAAYGKSDKIVRALL-QAGAKPDVN 303
            +DG E++IFKLVRE AT  QW EWLRAPLEHAA +G++DLFTRL+DAGADGSAGWRGCHGRTLLGAAAYGK+++IV  LL + GA  DVN
Sbjct:   65 LDGLEVEIFKLVREQATSMQWREWLRAPLEHAAAEGNIDLFTRLMDAGADGSAGWRGCHGRTLLGAAAYGKNEEIVERLLAEDGATEDVN 154          
BLAST of mRNA_L-elsbetiae_contig10466.458.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 3.290e-33
Identity = 65/98 (66.33%), Postives = 81/98 (82.65%), Query Frame = 1
Query:   16 RREDHTQIDGFELDIFKLVREHATFEQWGEWLRAPLEHAATKGDMDLFTRLIDAGADGSAGWRGCHGRTLLGAAAYGKSDKIVRALLQAGAKPDVN*R 309
            +RED + +DGFE++I +LVRE AT EQW +WLR PLEHAA KG++DLFTRL+DAG+ G  GWRGC+GRTLLGA AYG+S+K+VRALL+AG   D N R
Sbjct:    7 KREDRSHLDGFEVEIVELVREGATSEQWRQWLRIPLEHAAAKGNLDLFTRLMDAGSSGEPGWRGCNGRTLLGATAYGESEKMVRALLEAGVTYDRNVR 104          
BLAST of mRNA_L-elsbetiae_contig10466.458.1 vs. uniprot
Match: D8LQE9_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE9_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 3.690e-33
Identity = 68/104 (65.38%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 MSASPRREDHTQIDGFELDIFKLVREHATFEQWGEWLRAPLEHAATKGDMDLFTRLIDAGADGSAGWRG--CHGRTLLGAAAYG-KSDKIVRALLQAGAKPDVN 303
            MSAS  + D +++DGFE++IFKLV+E AT  QW +WLR PLEHAA KG++DLFTRL+DAGA G  GWRG  CH RTLLGAAA G KSDK++ ALL+AG   DVN
Sbjct:    1 MSAS--KGDRSRVDGFEIEIFKLVKEEATAGQWKQWLRTPLEHAAAKGNLDLFTRLMDAGAGGEPGWRGWGCHERTLLGAAACGTKSDKMIWALLEAGVTDDVN 102          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10466.458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE2_ECTSI1.230e-3960.48Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LQN0_ECTSI2.330e-3469.15Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D7G6Z7_ECTSI2.770e-3474.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LD22_ECTSI3.360e-3467.00MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQY9_9PHAE3.560e-3466.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB27_ECTSI7.790e-3465.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L812_9PHAE1.430e-3364.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G692_ECTSI1.850e-3374.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHY5_9PHAE3.290e-3366.33Integrase catalytic domain-containing protein n=2 ... [more]
D8LQE9_ECTSI3.690e-3365.38Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10466contigL-elsbetiae_contig10466:5087..6197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue1.3e-32
Seed eggNOG ortholog2880.D8LQE2
Preferred nameANKRD9
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1033
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10466.458.1prot_L-elsbetiae_contig10466.458.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10466 5892..6197 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.7155058-UTR-L-elsbetiae_contig10466:5086..52781622815270.7155058-UTR-L-elsbetiae_contig10466:5086..5278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10466 5087..5278 -
1691682808.3616025-UTR-L-elsbetiae_contig10466:5086..52781691682808.3616025-UTR-L-elsbetiae_contig10466:5086..5278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10466 5087..5278 -
1622815270.7286718-UTR-L-elsbetiae_contig10466:5356..58911622815270.7286718-UTR-L-elsbetiae_contig10466:5356..5891Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10466 5357..5891 -
1691682808.3751173-UTR-L-elsbetiae_contig10466:5356..58911691682808.3751173-UTR-L-elsbetiae_contig10466:5356..5891Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10466 5357..5891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.741115-CDS-L-elsbetiae_contig10466:5891..61971622815270.741115-CDS-L-elsbetiae_contig10466:5891..6197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10466 5892..6197 -
1691682808.3847995-CDS-L-elsbetiae_contig10466:5891..61971691682808.3847995-CDS-L-elsbetiae_contig10466:5891..6197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10466 5892..6197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10466.458.1

>prot_L-elsbetiae_contig10466.458.1 ID=prot_L-elsbetiae_contig10466.458.1|Name=mRNA_L-elsbetiae_contig10466.458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MSASPRREDHTQIDGFELDIFKLVREHATFEQWGEWLRAPLEHAATKGDM
DLFTRLIDAGADGSAGWRGCHGRTLLGAAAYGKSDKIVRALLQAGAKPDV
N*
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mRNA from alignment at L-elsbetiae_contig10466:5087..6197-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10466.458.1 ID=mRNA_L-elsbetiae_contig10466.458.1|Name=mRNA_L-elsbetiae_contig10466.458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1111bp|location=Sequence derived from alignment at L-elsbetiae_contig10466:5087..6197- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGCTTCTCCTCGCCGCGAAGACCACACGCAAATTGATGGCTTCGA ACTCGACATTTTCAAACTCGTCCGCGAGCATGCTACCTTCGAGCAGTGGG GGGAGTGGCTTCGTGCGCCGCTAGAGCATGCCGCAACCAAGGGCGACATG GACCTATTCACCAGGCTGATAGACGCTGGGGCTGACGGTAGTGCGGGCTG GCGGGGCTGTCATGGACGAACGCTACTCGGTGCTGCTGCATACGGCAAGA GCGACAAGATCGTACGGGCTTTGCTTCAGGCGGGGGCCAAGCCTGACGTT AATTAACGTGAAGTTCGGCACGAAGCGGGAGTCGGCACTTCATGTACATA GCAGCAGTGCAGGGTCTAGAAACGGTATCGAAAACGCTCATGCTGGCTGG AGCAGACCCGAGCATGCTGAATGGGGACATGGAAAGCCCGTTGCACCTGG CCGCTGAAGCAGGCCATCATACGATGTGAACAATCTGCTGCTGAAATGCG CTCTTCCTAACGCAAAGACCCGGGGAGCGGAGGAGACTCCTCTTCACTTG GCTTCAGCGAAAGGTTGCACTCTTTGCGTGTCCGCCCTTGTGCTCGGCGG GGCAAACACGGAGCTCTGCAACCGCAATGGTGAAACCCCACTGTACATGG CCGTCTAGCACAACCGTCTGGCTGTAGCCAAAGAGCTCTTGGCTGCTGGT GCCGACGTCGATTTTCGTCAATATTGGAGCCTACTCGATCTTGCTGCTGT GCATGGTCATGTAGACTGTTTGCGAGAACTTCTGCGGCACGGAAGTAGCG TCAAGGCTCGTGATGCGAAGGGGTACACAGCCCTGCACAATGTCGCTCAG AGCCTCTGCCTCGACAATGGCGATACCATCCGTGAGTTGCTGGAAGCAGG GGCTGATATCGAAGCAAAGACGGTCGGTGACGTCTCTACACCGCTCCGCC TTGCCGCCTATCAACGGATGAGATCGAGCGGTACGATCCGCGCCTTGTTG GAGGGCGATGCCAACGTAAATGCCCGCGATGCAGAAGGTGGCACCCCGTT GCACGACGCTTGCGCCCAATCCTCTGTTGGGGCTGTTGAGGCCCTGCTGC ATTGGGGAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10466:5087..6197-

>mRNA_L-elsbetiae_contig10466.458.1 ID=mRNA_L-elsbetiae_contig10466.458.1|Name=mRNA_L-elsbetiae_contig10466.458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig10466:5087..6197- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGCTTCTCCTCGCCGCGAAGACCACACGCAAATTGATGGCTTCGA
ACTCGACATTTTCAAACTCGTCCGCGAGCATGCTACCTTCGAGCAGTGGG
GGGAGTGGCTTCGTGCGCCGCTAGAGCATGCCGCAACCAAGGGCGACATG
GACCTATTCACCAGGCTGATAGACGCTGGGGCTGACGGTAGTGCGGGCTG
GCGGGGCTGTCATGGACGAACGCTACTCGGTGCTGCTGCATACGGCAAGA
GCGACAAGATCGTACGGGCTTTGCTTCAGGCGGGGGCCAAGCCTGACGTT
AATTAAATGTCAGCTTCTCCTCGCCGCGAAGACCACACGCAAATTGATGG
CTTCGAACTCGACATTTTCAAACTCGTCCGCGAGCATGCTACCTTCGAGC
AGTGGGGGGAGTGGCTTCGTGCGCCGCTAGAGCATGCCGCAACCAAGGGC
GACATGGACCTATTCACCAGGCTGATAGACGCTGGGGCTGACGGTAGTGC
GGGCTGGCGGGGCTGTCATGGACGAACGCTACTCGGTGCTGCTGCATACG
GCAAGAGCGACAAGATCGTACGGGCTTTGCTTCAGGCGGGGGCCAAGCCT
GACGTTAATTAA
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