mRNA_L-elsbetiae_contig16767.4560.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16767.4560.1
Unique NamemRNA_L-elsbetiae_contig16767.4560.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16767.4560.1 vs. uniprot
Match: D7FN94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN94_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 7.600e-77
Identity = 167/352 (47.44%), Postives = 215/352 (61.08%), Query Frame = 1 
Query:    1 MLAAKQTA---AKSGPPPIPSLESVAHQLGVDLAAEPELMHLVSEMRTTPLPPTWMV----------------VSTTVTDQHATRE-------------YANRVTGERTPEHPGTSYFVAAVESERRRNRHQGQGRSPVVSTSSPQAISGNNSSDSSSASIGAIDCRLSSSTLGQPRQEG----GSGSLVSTLSANGDSMDDGQAISAGSDS----TSKIKVVVRREKPQGVEARSMLNSAEGIGEQGSNTTRKRASSTRGKRAKRKMSPPKWLVFTSWWHETVSGTENVMNRKHASIRYATANASFEVELEDVPAIFEVSHATGRYGKIGTVDIRVGAQLSILGRQMRLMQ 936
            M+AA+ +    +K  PPP+PSLE++A  +GV+L +EPEL H+VSEMRTTPLPPTW +                 + ++T   A RE             Y NRVT ERT  HPGT YF+ AVE +R  N+ Q +G   VVS +SP+A + N++S      I  +D  L S+T   P ++G    G    + T+  +  +MDD Q +++ +DS    +SK++VV RR+KP      S+    +  G +  +T RKRA S               LVFTSWWHET +GTEN +NRKHASIRY+TAN S EVELEDVPAIFEVSHATGRYGK+G VDIRVGAQLSILGRQMRLMQ
Sbjct:    1 MIAARNSVVAQSKPKPPPMPSLEAIAKLIGVNLESEPELTHIVSEMRTTPLPPTWTIEEIGASQTTPPRASRFTTRSITSYTADREANLSASAIAPRLEYVNRVTRERTCTHPGTPYFLRAVERQRVSNQRQRRGEVVVVSGTSPKANNSNHNSI-----IDTMDWSLPSTTS-HPDEDGHAGRGGAPSIGTVHDDTATMDDDQPVASTTDSGTNNSSKVRVV-RRDKPGVGSGTSLAEQEQDNGAERGSTHRKRAPSXXXXXXXXXXXXXXXLVFTSWWHETTTGTENTVNRKHASIRYSTANGSLEVELEDVPAIFEVSHATGRYGKVGAVDIRVGAQLSILGRQMRLMQ 345
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BLAST of mRNA_L-elsbetiae_contig16767.4560.1 vs. uniprot
Match: A0A6H5KUJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ0_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 7.300e-35
Identity = 123/339 (36.28%), Postives = 154/339 (45.43%), Query Frame = 1 
Query:    1 MLAAKQTA---AKSGPPPIPSLESVAHQLGVDLAAEPELMHLVSEMRTTPLPPTWMV---------------VSTTVTDQHATR--------------EYANRVTGERTPEHPGTSYFVAAVESERRRNRHQGQGRSPVVSTSSPQAISGNNSSDSSSASIGAIDCRLSSSTLGQPRQEG-GSGSLVSTLSANGDSMDDGQAISAGSDSTSKIKVVVRREKPQGVEARSMLNSAEGIGEQGSNTTRKRASSTRGKRAKRKMSPPK-------WLVFTSWWH----------ETVSGTENVMNRKHASIRYATANASFEVELEDVPAIFEVSHATGRYGK 867
            M+AA+ +A   +K  PPP+PSLE++A  +GV+L +EPEL H+VSEM+TTPLPPTW +                +T  T  H                 EY NR+T ERT  HPGT YF+ AVE +R  N+ Q +G   VVS +SP+A   NNS              L+++   + R  G GS   VST+  +  +MD                                                                          WLVFTSWWH          ET +GTEN +NRKHASIRY+ AN S EVELEDVPAIFEVSHATGR  K
Sbjct:    1 MIAARNSAVVQSKPKPPPMPSLEAIAKLIGVNLESEPELTHIVSEMQTTPLPPTWTIEEIGAGQTTSRSSRFTTTGSTTSHTADSEANLPASTIAPKLEYVNRLTRERTCTHPGTPYFLRAVEQQRVSNQRQRRGEVVVVSGTSPKA---NNSKHKCIIDTMDWSFPLTTTHPEEDRHAGQGSAPRVSTIHDDTAAMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLVFTSWWHVRRCSSSRTAETTTGTENTVNRKHASIRYSAANGSLEVELEDVPAIFEVSHATGRQTK 336
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16767.4560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN94_ECTSI7.600e-7747.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUJ0_9PHAE7.300e-3536.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16767contigL-elsbetiae_contig16767:749..3434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue4.6e-09
Seed eggNOG ortholog36331.EPrPI00000019502
Hectar predicted targeting categoryother localisation
EggNOG OGs1MIXA@121069,2BJJR@1,2S1GF@2759
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003450.1
Exons5
Model size936
Cds size936
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16767.4560.1prot_L-elsbetiae_contig16767.4560.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16767 749..3434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.7703514-CDS-L-elsbetiae_contig16767:748..8581622815696.7703514-CDS-L-elsbetiae_contig16767:748..858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16767 749..858 +
1691683044.1315887-CDS-L-elsbetiae_contig16767:748..8581691683044.1315887-CDS-L-elsbetiae_contig16767:748..858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16767 749..858 +
1622815696.7800925-CDS-L-elsbetiae_contig16767:1477..19001622815696.7800925-CDS-L-elsbetiae_contig16767:1477..1900Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16767 1478..1900 +
1691683044.1446068-CDS-L-elsbetiae_contig16767:1477..19001691683044.1446068-CDS-L-elsbetiae_contig16767:1477..1900Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16767 1478..1900 +
1622815696.7948663-CDS-L-elsbetiae_contig16767:2145..23351622815696.7948663-CDS-L-elsbetiae_contig16767:2145..2335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16767 2146..2335 +
1691683044.1536589-CDS-L-elsbetiae_contig16767:2145..23351691683044.1536589-CDS-L-elsbetiae_contig16767:2145..2335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16767 2146..2335 +
1622815696.8108337-CDS-L-elsbetiae_contig16767:2816..29501622815696.8108337-CDS-L-elsbetiae_contig16767:2816..2950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16767 2817..2950 +
1691683044.1626308-CDS-L-elsbetiae_contig16767:2816..29501691683044.1626308-CDS-L-elsbetiae_contig16767:2816..2950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16767 2817..2950 +
1622815696.8234315-CDS-L-elsbetiae_contig16767:3355..34341622815696.8234315-CDS-L-elsbetiae_contig16767:3355..3434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16767 3356..3434 +
1691683044.1756673-CDS-L-elsbetiae_contig16767:3355..34341691683044.1756673-CDS-L-elsbetiae_contig16767:3355..3434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16767 3356..3434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16767.4560.1

>prot_L-elsbetiae_contig16767.4560.1 ID=prot_L-elsbetiae_contig16767.4560.1|Name=mRNA_L-elsbetiae_contig16767.4560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=312bp
MLAAKQTAAKSGPPPIPSLESVAHQLGVDLAAEPELMHLVSEMRTTPLPP
TWMVVSTTVTDQHATREYANRVTGERTPEHPGTSYFVAAVESERRRNRHQ
GQGRSPVVSTSSPQAISGNNSSDSSSASIGAIDCRLSSSTLGQPRQEGGS
GSLVSTLSANGDSMDDGQAISAGSDSTSKIKVVVRREKPQGVEARSMLNS
AEGIGEQGSNTTRKRASSTRGKRAKRKMSPPKWLVFTSWWHETVSGTENV
MNRKHASIRYATANASFEVELEDVPAIFEVSHATGRYGKIGTVDIRVGAQ
LSILGRQMRLMQ
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mRNA from alignment at L-elsbetiae_contig16767:749..3434+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16767.4560.1 ID=mRNA_L-elsbetiae_contig16767.4560.1|Name=mRNA_L-elsbetiae_contig16767.4560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2686bp|location=Sequence derived from alignment at L-elsbetiae_contig16767:749..3434+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGCCGCCAAGCAGACTGCCGCCAAATCGGGCCCACCGCCGATTCC
CTCGCTAGAATCAGTCGCCCATCAGCTGGGAGTGGATCTAGCCGCCGAGC
CAGAGCTGATGTGAGCAACAGCAGTGTGAGCACGCGGAAAGGTGTTTTGT
TATGGTTCGACTTCACATAATTTGCATGTAGTCTATCTATTTAGATAGAT
ATCTATCTAGAGGTCGCGGGACTGTCTGACTGCTCGGTGACGTTTTTAGT
GTCTTCGCACTGCTGGGTCTAGCACCAGACTTCTTGTTCGAGAAAATAAC
TCGTTGTCGACCATGTCTCGGGGGTTATACTTACAAAAGTAGTACCAATT
ACCCCGTGCATTTATGTGGGCTCTGCTACGTATCGATCGAGGTACAGCAG
TAGGTCGACTACGTGTAGCTACAGAGTCCGGTAAGGCTAATATGTAGTCT
AGACTACGGTATCTATATATGTATGACAGTATTTATAACCATAATGCGTG
GTTAGATTCGACGGCAATGGGTTTATAAAACAATAGTTGAAGGTACACGG
ACCGGCCCGCGGCAAGCTTGTTTCTCTACCTAAACTCTGAGCTAATATCT
AGCTGGAGGAGGTCCCCGGCTGCGCACCGATACTTTGTAGGTATAGGTCT
GGACATATACGCCGTGGTGCCCTCACCAGCCAGCCGTATAATACTCCGAA
CACCTCTACCTTGCCTGACCCTCTAAAAGGCACTTGGTGTCAGAGATGAG
GACGACACCGCTCCCTCCGACGTGGATGGTAGTATCAACAACCGTCACCG
ACCAGCACGCCACACGTGAGTACGCCAACCGTGTGACCGGAGAAAGGACT
CCGGAGCACCCAGGGACGTCGTACTTTGTGGCTGCAGTAGAGAGCGAGAG
ACGCAGGAACAGGCATCAAGGCCAGGGACGATCGCCAGTAGTGTCGACGT
CGTCCCCGCAGGCGATCAGCGGCAACAACAGCAGCGACAGCAGCAGCGCC
AGCATCGGAGCTATCGATTGTAGACTTTCGTCGTCGACTCTGGGGCAGCC
GCGGCAGGAAGGAGGAAGCGGCAGCCTCGTCTCTACCCTCAGCGCAAACG
GGGACAGTATGGACGATGGCCAGGCGATATCTGCTGGGTCGGACAGTACA
AGGTAGCAGCGAGAGAGAGGGAACATTTCACACACCGTACCAAGAGCAAC
TGCTGCTATGTACATAGCAGTGGCACAGAAAGTGTGGCAGGGCTTGCCTC
CGAGTTGTTCGTAATTTTAAACTTTTTTTTCTCCGTCGATGTGTGTATGT
AGATGTATGCAAGCAACATGCATTACATACTCCGTCGACCACTGGTGATT
GGTGCTTGCGCGCATACCGTCTCCTTCCGCCTGTCGAAACATGGCAGCAA
AATAAAGGTAGTGGTGCGGAGGGAAAAACCGCAGGGGGTCGAGGCTCGGA
GCATGCTCAACTCGGCCGAAGGGATCGGGGAGCAGGGAAGCAATACCACG
CGAAAACGAGCCTCGAGCACCAGGGGAAAACGCGCGAAGCGCAAGATGTC
ACCGCCGAAGTGGCTTGTTTTCACATCATGGTGGCATGTAAGTTTGTAAC
AAACACGGAAAGCCCAGGACAGTATTCCATGTTTTTCTCGTCAGCTTTGG
ATGCGGCGGACGTCGCATCAAACGTAAGACTACGGGAACTCGGGTACCCG
GGAGGAAATGCTTCCGTGGCCTCATTGATGGAGTTTTCACTCTTGCTCTC
ATGCACAGCAGCAACTCAAAGTGAGTGTTTATTTGCAGGCAAGCTAGGAT
TCAGTGATTTGGTGGTGTAATGCCAACAATGTAAGCAACAACATCATATG
TCGGATGCGCCCACACGTTGACACGAGTGGAAGATTTCCAAGCATCATGA
CTAGACAACGCTTCCGACGATAAAACCATGCGCTTGAAATGAGCTTGTAA
ACCTGCTGCTCTCTCCCCGAAGGCTGACATTCAATTTTGGTGAATAGTGT
AACCACCAACATCATAGATACCTCGAGCCGATTCCAGAAGATCTCCACTC
CAAAACGTTCCGACACAGGAGACGGTCAGTGGAACGGAAAACGTCATGAA
CCGCAAGCACGCCTCCATACGATACGCCACCGCGAATGCCTCTTTCGAGG
TGGAGCTAGAGGACGTTCCTGCAATCTTCGAGGTGTCGCACGCCACCGGA
AGGTGATTCGGGTCGCCAAGGCCTCGTACTCTGTGAGAGGTTCTGGACGT
AGGCTGGTCACAAATGGATCAGCCCTCAAACAACGCCTTCGATATTCTCC
CAAAGACTTTCGAGCGCTTGCAGTGTTGCAGTAATAGATATATTTATCTA
CATACATATCCCAGGCCATGGCTCCTAATGTTGTAGTGGACACTAGGTTC
GCGGAAGAGGTGAACTACGCTGTGATGAACATGCTCACAACAATTGTTTT
TCTCCGCGTATTTTGTCTCCCGCAGTAGTACATACATAATACATAGTAGG
GGTGACACCATTCGTCAACAAATGGCCTGTTTCTGCGTTTATTTTTCTCT
TCTTGTGCCCACCTACCTCTTCATGACGACGCTCGCTCGCGGTCTACGTG
ACACAAGGTACGGCAAGATTGGAACGGTCGATATTCGCGTTGGAGCTCAG
CTTTCGATCTTGGGGCGGCAGATGCGGCTCATGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16767:749..3434+

>mRNA_L-elsbetiae_contig16767.4560.1 ID=mRNA_L-elsbetiae_contig16767.4560.1|Name=mRNA_L-elsbetiae_contig16767.4560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1872bp|location=Sequence derived from alignment at L-elsbetiae_contig16767:749..3434+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGCCGCCAAGCAGACTGCCGCCAAATCGGGCCCACCGCCGATTCC
CTCGCTAGAATCAGTCGCCCATCAGCTGGGAGTGGATCTAGCCGCCGAGC
CAGAGCTGATATGCTCGCCGCCAAGCAGACTGCCGCCAAATCGGGCCCAC
CGCCGATTCCCTCGCTAGAATCAGTCGCCCATCAGCTGGGAGTGGATCTA
GCCGCCGAGCCAGAGCTGATGCACTTGGTGTCAGAGATGAGGACGACACC
GCTCCCTCCGACGTGGATGGTAGTATCAACAACCGTCACCGACCAGCACG
CCACACGTGAGTACGCCAACCGTGTGACCGGAGAAAGGACTCCGGAGCAC
CCAGGGACGTCGTACTTTGTGGCTGCAGTAGAGAGCGAGAGACGCAGGAA
CAGGCATCAAGGCCAGGGACGATCGCCAGTAGTGTCGACGTCGTCCCCGC
AGGCGATCAGCGGCAACAACAGCAGCGACAGCAGCAGCGCCAGCATCGGA
GCTATCGATTGTAGACTTTCGTCGTCGACTCTGGGGCAGCCGCGGCAGGA
AGGAGGAAGCGGCAGCCTCGTCTCTACCCTCAGCGCAAACGGGGACAGTA
TGGACGATGGCCAGGCGATATCTGCTGGGTCGGACAGTACAAGGCACTTG
GTGTCAGAGATGAGGACGACACCGCTCCCTCCGACGTGGATGGTAGTATC
AACAACCGTCACCGACCAGCACGCCACACGTGAGTACGCCAACCGTGTGA
CCGGAGAAAGGACTCCGGAGCACCCAGGGACGTCGTACTTTGTGGCTGCA
GTAGAGAGCGAGAGACGCAGGAACAGGCATCAAGGCCAGGGACGATCGCC
AGTAGTGTCGACGTCGTCCCCGCAGGCGATCAGCGGCAACAACAGCAGCG
ACAGCAGCAGCGCCAGCATCGGAGCTATCGATTGTAGACTTTCGTCGTCG
ACTCTGGGGCAGCCGCGGCAGGAAGGAGGAAGCGGCAGCCTCGTCTCTAC
CCTCAGCGCAAACGGGGACAGTATGGACGATGGCCAGGCGATATCTGCTG
GGTCGGACAGTACAAGCAAAATAAAGGTAGTGGTGCGGAGGGAAAAACCG
CAGGGGGTCGAGGCTCGGAGCATGCTCAACTCGGCCGAAGGGATCGGGGA
GCAGGGAAGCAATACCACGCGAAAACGAGCCTCGAGCACCAGGGGAAAAC
GCGCGAAGCGCAAGATGTCACCGCCGAAGTGGCTTGTTTTCACATCATGG
TGGCATCAAAATAAAGGTAGTGGTGCGGAGGGAAAAACCGCAGGGGGTCG
AGGCTCGGAGCATGCTCAACTCGGCCGAAGGGATCGGGGAGCAGGGAAGC
AATACCACGCGAAAACGAGCCTCGAGCACCAGGGGAAAACGCGCGAAGCG
CAAGATGTCACCGCCGAAGTGGCTTGTTTTCACATCATGGTGGCATGAGA
CGGTCAGTGGAACGGAAAACGTCATGAACCGCAAGCACGCCTCCATACGA
TACGCCACCGCGAATGCCTCTTTCGAGGTGGAGCTAGAGGACGTTCCTGC
AATCTTCGAGGTGTCGCACGCCACCGGAAGGAGACGGTCAGTGGAACGGA
AAACGTCATGAACCGCAAGCACGCCTCCATACGATACGCCACCGCGAATG
CCTCTTTCGAGGTGGAGCTAGAGGACGTTCCTGCAATCTTCGAGGTGTCG
CACGCCACCGGAAGGTACGGCAAGATTGGAACGGTCGATATTCGCGTTGG
AGCTCAGCTTTCGATCTTGGGGCGGCAGATGCGGCTCATGCAGGTACGGC
AAGATTGGAACGGTCGATATTCGCGTTGGAGCTCAGCTTTCGATCTTGGG
GCGGCAGATGCGGCTCATGCAG
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