mRNA_L-elsbetiae_contig10444.439.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10444.439.1
Unique NamemRNA_L-elsbetiae_contig10444.439.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10444.439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10444contigL-elsbetiae_contig10444:705..2785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size207
Cds size108
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10444.439.1prot_L-elsbetiae_contig10444.439.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10444 739..2720 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.1004207-UTR-L-elsbetiae_contig10444:704..7381622815269.1004207-UTR-L-elsbetiae_contig10444:704..738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10444 705..738 -
1691682807.3919115-UTR-L-elsbetiae_contig10444:704..7381691682807.3919115-UTR-L-elsbetiae_contig10444:704..738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10444 705..738 -
1622815269.1275175-UTR-L-elsbetiae_contig10444:2720..27851622815269.1275175-UTR-L-elsbetiae_contig10444:2720..2785Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10444 2721..2785 -
1691682807.4196296-UTR-L-elsbetiae_contig10444:2720..27851691682807.4196296-UTR-L-elsbetiae_contig10444:2720..2785Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10444 2721..2785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.1097858-CDS-L-elsbetiae_contig10444:738..7551622815269.1097858-CDS-L-elsbetiae_contig10444:738..755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10444 739..755 -
1691682807.403732-CDS-L-elsbetiae_contig10444:738..7551691682807.403732-CDS-L-elsbetiae_contig10444:738..755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10444 739..755 -
1622815269.118843-CDS-L-elsbetiae_contig10444:2629..27201622815269.118843-CDS-L-elsbetiae_contig10444:2629..2720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10444 2630..2720 -
1691682807.4116898-CDS-L-elsbetiae_contig10444:2629..27201691682807.4116898-CDS-L-elsbetiae_contig10444:2629..2720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10444 2630..2720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10444.439.1

>prot_L-elsbetiae_contig10444.439.1 ID=prot_L-elsbetiae_contig10444.439.1|Name=mRNA_L-elsbetiae_contig10444.439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=36bp
MQARYEQVSWRGKVSSPVKNIRTVLISAPVSGYIR*
back to top

mRNA from alignment at L-elsbetiae_contig10444:705..2785-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10444.439.1 ID=mRNA_L-elsbetiae_contig10444.439.1|Name=mRNA_L-elsbetiae_contig10444.439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2081bp|location=Sequence derived from alignment at L-elsbetiae_contig10444:705..2785- (Laminarionema elsbetiae ELsaHSoW15)
TGTTATGGTATTCGCAGGTGCAGGATACATCCGTTGAAAGAGAATCCAAC
CGTTTGGATATAGATATGCAAGCACGGTACGAACAGGTCAGTTGGAGAGG
TAAGGTCTCTAGTCCGGTGAAGAATATCAGAACAGTTCTGATATCCGCAC
CGGTATGCATGAGGTATTTCAAACTCGGCGTTCCCGGTTCCTTGATATTT
ATTTGGCTGTTCCTAAGAGGGTACTGCTAGTAACGCCGTTGGAGAGTTAT
GAGCTCTCGTCTCTCTGCGGACAGCAGAGTGCTCTGTCTATTGAGCTACA
ACGACACGTTGAGTGACAGTTGCTCGGGTGAGAGAGACAGGAAAGAGGAG
TGACAGAGAGGGGGACGAGAGCGGGGCTCTCGTGTTTCCTTGGACAGACC
TTGTGAAGGGACAATCTCAACGAGGGGACAGACCTTGTGAGGAGACAATC
TCACCGAGGGGACACATCTCCGGAGAACGCGGAGGGTTTTCTATAGGACA
GATATAAGTAGGCATGTTGGGTCCGCAGAACTGTGATCCACATTCCACTC
CCGGACTTTTATTCTTGGATACCCAAAAGATCTGCCAAGTTGTTTCAAAC
TCGATCTTGAGCCCACGGAGGGTCATTATTTGCCTGTTCCTCAGTCACCA
AATGACGCCGGCGCTGTGGATAATGTTCCTCGTCAGTCACAAAATGACGT
CTGTGCATGCATGAGGCATGTAGCCTCCCTTCTGACGCACACACAGCACA
GGATGGTTGCATCCAGCGCCATCCGGGGCACGCACAGTAGTTATGCACCA
GGCTGGGGTGGTGTATTCCCACGACGTTAGTATAGCGCATTTAGTTTCAA
ACTTTCAAATGCTCTTGGTGGTGACTCTGTGATACTGCTCGAGGGCACTC
TCCCCCCGCGGGTCATGAGAAAAAGTGCACAGATGAAGTTCGACAGAGAG
AGGTATCATCTAGAGTGTTGTTCCCTCGTGGTGTATACTGCTGTAGCACC
CCAGTGTATCAGCCCTGACTGTACTTGCTACACGAAGCAGACAAAGTCTG
CACAGCAGCAGTATTGCCTACAGGTATCTATTAGCGACTGAAGTTGATAT
AGTCTATGAGAGTCGTTCAACACGCAAGATAAGTCTATCCTGTTGCAACA
GCTCAGAGCAACACGCGAGGCCGAGATAATAATAGTTTCACCATCGTACC
CCATCATTGCCCTAGAGATGGCAACCTACATAGAGTACGAGCTGGGAACG
ACACATCCTTCAGAAACGAAGATAACCCATCGTATCGTTTTCCGTTCTTC
TTTTAGAAGAGCGAGTATACCGCAGACAGACGAGAAATAAATGGATTCAA
CACGGGTGTAAAGTGTAAACCAGTAAAAAACCAGTAACCAGCAAAATAAA
AATACCCCGTCCATTGCGAGTAGCGAGTGCGGCCTAGTCGCTACTTCGTT
ACCACAGGAGCAATGGGTATCGCTGCGTAGATAGGTGTTCGCGAGGAACG
AGGCACAGAGGAGGGAAGGGTGTGTGGAAGCAAGCAAGCTTTCCGGCAAA
TTGTGGGAGGCGGCCTACGGTACATACGCTAGAGAGGAGAGAGGGAAAAA
GTAGTGCTCGTCGGGGGTTCCCCAACCTCCCGGCTGCCCTCACTGACGTT
GTATGTCACCACCATCATATTCGCCTCGATTGCGCCCCGTGTAGTATGTA
TCGGCAATCGGCAACGGCGCGGCCCGTGTGTGTGTCTTTTCAACCTCGAG
GCATGGGTAGCATCCATCTGCGCATGCATGTGAGCAGGCACATAACATAT
GTGAAGATCCTCCCGGGGATAATTCGTATCAGCGAAAAAGTGCCCGATGA
ATATTTGTTCAGGAATGCTTTTGTTGGAAGAACCGTCTGGAAATTCCAGG
TCTAAAGTACTCCCGAGTTCAGGAATATCGGCGTGGCATTTCAAATGGCA
TTTCAAACTCAAACTCGGGAATTCGTGATTATCCACCCAACAAACCCGGG
AACGCCCTCCCCGAGTTTGAAATACCTCAGCAGGATACATCCGTTGAAAT
ACAATCCAACCGTCCGTTTGGATATAGATAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10444:705..2785-

>mRNA_L-elsbetiae_contig10444.439.1 ID=mRNA_L-elsbetiae_contig10444.439.1|Name=mRNA_L-elsbetiae_contig10444.439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=216bp|location=Sequence derived from alignment at L-elsbetiae_contig10444:705..2785- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGCACGGTACGAACAGGTCAGTTGGAGAGGTAAGGTCTCTAGTCC
GGTGAAGAATATCAGAACAGTTCTGATATCCGCACCGGTATATGCAAGCA
CGGTACGAACAGGTCAGTTGGAGAGGTAAGGTCTCTAGTCCGGTGAAGAA
TATCAGAACAGTTCTGATATCCGCACCGGTATCAGGATACATCCGTTGAC
AGGATACATCCGTTGA
back to top