mRNA_L-elsbetiae_contig10435.436.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10435.436.1
Unique NamemRNA_L-elsbetiae_contig10435.436.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10435.436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10435contigL-elsbetiae_contig10435:5038..6253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1216
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10435.436.1prot_L-elsbetiae_contig10435.436.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10435 5258..5866 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.7539115-UTR-L-elsbetiae_contig10435:5037..52571622815268.7539115-UTR-L-elsbetiae_contig10435:5037..5257Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10435 5038..5257 +
1691682807.2756226-UTR-L-elsbetiae_contig10435:5037..52571691682807.2756226-UTR-L-elsbetiae_contig10435:5037..5257Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10435 5038..5257 +
1622815268.7775161-UTR-L-elsbetiae_contig10435:5866..62531622815268.7775161-UTR-L-elsbetiae_contig10435:5866..6253Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10435 5867..6253 +
1691682807.2925243-UTR-L-elsbetiae_contig10435:5866..62531691682807.2925243-UTR-L-elsbetiae_contig10435:5866..6253Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10435 5867..6253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.7659094-CDS-L-elsbetiae_contig10435:5257..58661622815268.7659094-CDS-L-elsbetiae_contig10435:5257..5866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10435 5258..5866 +
1691682807.2843747-CDS-L-elsbetiae_contig10435:5257..58661691682807.2843747-CDS-L-elsbetiae_contig10435:5257..5866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10435 5258..5866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10435.436.1

>prot_L-elsbetiae_contig10435.436.1 ID=prot_L-elsbetiae_contig10435.436.1|Name=mRNA_L-elsbetiae_contig10435.436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
MGAAARAFGNARVVLPLERIGEIVGKSDFSGGEAAGSCQRKVSYLLLCPG
RGKGENLIQRKFRKKVRAGCCGMSTTWCFGGKRTEFWLRRKILGTILEEE
PQQATPTNRQSRQRATNKLRRIKRTKSEEYRSTCEGPRGRQFCSFISLTA
SSREGCLRSASRRKKTTPEVKATTRGWEKGWATEGLLYVLRTCDGIWRRG
LN*
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mRNA from alignment at L-elsbetiae_contig10435:5038..6253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10435.436.1 ID=mRNA_L-elsbetiae_contig10435.436.1|Name=mRNA_L-elsbetiae_contig10435.436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1216bp|location=Sequence derived from alignment at L-elsbetiae_contig10435:5038..6253+ (Laminarionema elsbetiae ELsaHSoW15)
ATTATCGATGGGTGGTGGTGGGGGGGACTTGATTCGTTGGCTTGACCGGC
AAGAACCCGGCACGGAACACCCCGGCATTATCAGGGCACCAAGCTAAAAC
CAGGGACAGGTTGGTGGTGCTGGCTTTTCCGGTTTTGCTTTTTCTGCCTT
GCTCGCCCTTCGGGTCCATTTTTATATGTTCGGTCACCCTACTTGAAGGA
ATAAATGGTCGAGAGAAGGGATGGGGGCGGCGGCGAGGGCATTCGGGAAC
GCGAGAGTTGTCTTGCCTTTGGAAAGGATTGGTGAAATAGTCGGGAAAAG
TGACTTTTCGGGGGGGGAAGCGGCCGGATCCTGTCAGAGAAAGGTCAGCT
ATTTACTCCTTTGTCCCGGAAGAGGGAAGGGGGAGAATTTAATACAAAGG
AAATTCCGTAAGAAAGTACGGGCGGGTTGCTGTGGGATGAGTACAACCTG
GTGTTTTGGCGGAAAAAGGACGGAATTTTGGTTACGCCGAAAGATCCTGG
GAACAATTCTAGAAGAAGAGCCGCAGCAGGCCACACCAACAAATCGCCAG
AGCAGACAGAGAGCCACAAATAAATTAAGAAGGATAAAGAGGACCAAGAG
CGAGGAGTATAGGTCCACCTGCGAGGGGCCGAGAGGGAGGCAGTTTTGTT
CCTTTATTTCGCTCACTGCTTCATCGCGAGAAGGCTGCCTGCGGTCAGCA
AGCCGGAGAAAAAAAACCACACCGGAGGTCAAGGCGACGACGAGAGGTTG
GGAAAAAGGATGGGCCACCGAAGGGCTGCTCTACGTACTTCGCACCTGTG
ATGGAATCTGGAGGCGAGGTTTAAATTAATTGCCCGCCCGCCCACCAACA
CCAAAAAAAGACTAAATTTGAAAGCAAAAGTGTAGGTATAGTGCGTGTTT
TGCTATTTCGTGTTGGGGCAGGCTGAGAAATGCGGGACCAATTCTGTTGA
AGAAGGCCGTGGAGTACACAGATGGGGCAAGGAGACAAGAAACTTTAAGA
AAGAATCACAGTAAATTGGCCTATGACCACTGGAATCAACCGCATCAAGT
GCTGAATTAGGGTAGTCTTAAACGAAGCATTATTTGTTCATGGGTTTCAG
TGATTCCACGGAGGTGGAAACGAAGATTTTGATCGTGCTTTACTCTCCTT
GAGATTCTTTAGAACTGAAGTCTTCCCTCTGCACTATAAGCTCTCAGAAT
GATATTCCTTCCCTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10435:5038..6253+

>mRNA_L-elsbetiae_contig10435.436.1 ID=mRNA_L-elsbetiae_contig10435.436.1|Name=mRNA_L-elsbetiae_contig10435.436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig10435:5038..6253+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGCGGCGGCGAGGGCATTCGGGAACGCGAGAGTTGTCTTGCCTTT
GGAAAGGATTGGTGAAATAGTCGGGAAAAGTGACTTTTCGGGGGGGGAAG
CGGCCGGATCCTGTCAGAGAAAGGTCAGCTATTTACTCCTTTGTCCCGGA
AGAGGGAAGGGGGAGAATTTAATACAAAGGAAATTCCGTAAGAAAGTACG
GGCGGGTTGCTGTGGGATGAGTACAACCTGGTGTTTTGGCGGAAAAAGGA
CGGAATTTTGGTTACGCCGAAAGATCCTGGGAACAATTCTAGAAGAAGAG
CCGCAGCAGGCCACACCAACAAATCGCCAGAGCAGACAGAGAGCCACAAA
TAAATTAAGAAGGATAAAGAGGACCAAGAGCGAGGAGTATAGGTCCACCT
GCGAGGGGCCGAGAGGGAGGCAGTTTTGTTCCTTTATTTCGCTCACTGCT
TCATCGCGAGAAGGCTGCCTGCGGTCAGCAAGCCGGAGAAAAAAAACCAC
ACCGGAGGTCAAGGCGACGACGAGAGGTTGGGAAAAAGGATGGGCCACCG
AAGGGCTGCTCTACGTACTTCGCACCTGTGATGGAATCTGGAGGCGAGGT
TTAAATTAAATGGGGGCGGCGGCGAGGGCATTCGGGAACGCGAGAGTTGT
CTTGCCTTTGGAAAGGATTGGTGAAATAGTCGGGAAAAGTGACTTTTCGG
GGGGGGAAGCGGCCGGATCCTGTCAGAGAAAGGTCAGCTATTTACTCCTT
TGTCCCGGAAGAGGGAAGGGGGAGAATTTAATACAAAGGAAATTCCGTAA
GAAAGTACGGGCGGGTTGCTGTGGGATGAGTACAACCTGGTGTTTTGGCG
GAAAAAGGACGGAATTTTGGTTACGCCGAAAGATCCTGGGAACAATTCTA
GAAGAAGAGCCGCAGCAGGCCACACCAACAAATCGCCAGAGCAGACAGAG
AGCCACAAATAAATTAAGAAGGATAAAGAGGACCAAGAGCGAGGAGTATA
GGTCCACCTGCGAGGGGCCGAGAGGGAGGCAGTTTTGTTCCTTTATTTCG
CTCACTGCTTCATCGCGAGAAGGCTGCCTGCGGTCAGCAAGCCGGAGAAA
AAAAACCACACCGGAGGTCAAGGCGACGACGAGAGGTTGGGAAAAAGGAT
GGGCCACCGAAGGGCTGCTCTACGTACTTCGCACCTGTGATGGAATCTGG
AGGCGAGGTTTAAATTAA
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