mRNA_L-elsbetiae_contig16390.4341.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16390.4341.1
Unique NamemRNA_L-elsbetiae_contig16390.4341.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16390.4341.1 vs. uniprot
Match: A0A6H5KPF6_9PHAE (EngB-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPF6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 8.650e-24
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 RYVVVLTKADKSDNSVSRKVLDGVVSALREAGVSRTPVVLTSAASKLGRDGMWR 162
            RYVVVLTKADKSDNSVSR+VL+GVV+ALREAGVSRTPVVLTSAASKLGRDGMWR
Sbjct:  553 RYVVVLTKADKSDNSVSRQVLEGVVAALREAGVSRTPVVLTSAASKLGRDGMWR 606
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BLAST of mRNA_L-elsbetiae_contig16390.4341.1 vs. uniprot
Match: A0A836C8M6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M6_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.250e-15
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 RYVVVLTKADKSDNSVSRKVLDGVVSALREAGVSRTPVVLTSAASKLGRDGMWR 162
            RYV+VLTKADK DN+VS  V+   ++ALREAGV   PVV+TSA +KLGRD MWR
Sbjct:  241 RYVIVLTKADKQDNTVSAGVMAATITALREAGVENAPVVITSAETKLGRDAMWR 294
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BLAST of mRNA_L-elsbetiae_contig16390.4341.1 vs. uniprot
Match: W7TF44_9STRA (GTPase-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TF44_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.110e-7
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 RYVVVLTKADKSDNSVSRKVLDGVVSALREAGVSRT-PVVLTSAASKLGRDGMWR 162
            +YV++LTKADK D  VS  +   V  AL    +  T PV++TSA ++LGRD +WR
Sbjct:   15 QYVIILTKADKKDGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWR 69
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BLAST of mRNA_L-elsbetiae_contig16390.4341.1 vs. uniprot
Match: A0A7R9WZ35_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WZ35_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.420e-6
Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:    4 YVVVLTKADKS--------DNSVSRKVLDGVVSALREAGVSRTPVVLTSAASKLGRDGMWR 162
            YVVVLTKADK+           VS  +L  V   ++   V  +P++LTSA +KLGRD +WR
Sbjct:  147 YVVVLTKADKNVKKSSKHKPGKVSADILTSVRETMKRCKVGNSPIILTSAETKLGRDDIWR 207
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BLAST of mRNA_L-elsbetiae_contig16390.4341.1 vs. uniprot
Match: A0A4D9D8J4_9STRA (EngB-type G domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8J4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.970e-6
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 RYVVVLTKADKSDNSVSRKVLDGVVSALREAGVSRT-PVVLTSAASKLGRDGMWR 162
            +YV++LTKADK D  VS  +   V  AL    +  T PV++TSA ++LGRD +WR
Sbjct:  597 QYVIILTKADKKDGKVSPSLKQQVADALDAHQLKETTPVLVTSAVNRLGRDEVWR 651
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16390.4341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KPF6_9PHAE8.650e-2494.44EngB-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A836C8M6_9STRA2.250e-1566.67P-loop containing nucleoside triphosphate hydrolas... [more]
W7TF44_9STRA2.110e-747.27GTPase-like protein n=1 Tax=Nannochloropsis gadita... [more]
A0A7R9WZ35_9STRA2.420e-644.26Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A4D9D8J4_9STRA4.970e-647.27EngB-type G domain-containing protein n=1 Tax=Nann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16390contigL-elsbetiae_contig16390:2417..2581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog2880.D7G7B8
KEGG koko:K03978
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.GTP binding
EggNOG OGsCOG0218@1,KOG2486@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.6309662-CDS-L-elsbetiae_contig16390:2416..25811622815676.6309662-CDS-L-elsbetiae_contig16390:2416..2581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16390 2417..2581 +
1691683031.319398-CDS-L-elsbetiae_contig16390:2416..25811691683031.319398-CDS-L-elsbetiae_contig16390:2416..2581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16390 2417..2581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16390.4341.1prot_L-elsbetiae_contig16390.4341.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16390 2417..2581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16390.4341.1

>prot_L-elsbetiae_contig16390.4341.1 ID=prot_L-elsbetiae_contig16390.4341.1|Name=mRNA_L-elsbetiae_contig16390.4341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
RYVVVLTKADKSDNSVSRKVLDGVVSALREAGVSRTPVVLTSAASKLGRD
GMWR*
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mRNA from alignment at L-elsbetiae_contig16390:2417..2581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16390.4341.1 ID=mRNA_L-elsbetiae_contig16390.4341.1|Name=mRNA_L-elsbetiae_contig16390.4341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig16390:2417..2581+ (Laminarionema elsbetiae ELsaHSoW15)
AGATACGTGGTGGTGCTAACGAAGGCGGACAAGTCGGACAATTCTGTGTC
GAGGAAGGTTCTGGACGGAGTCGTGAGCGCGCTCCGGGAGGCAGGGGTCT
CCCGCACGCCCGTCGTGCTCACTAGCGCTGCTTCCAAGCTGGGGAGAGAT
GGAATGTGGAGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16390:2417..2581+

>mRNA_L-elsbetiae_contig16390.4341.1 ID=mRNA_L-elsbetiae_contig16390.4341.1|Name=mRNA_L-elsbetiae_contig16390.4341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig16390:2417..2581+ (Laminarionema elsbetiae ELsaHSoW15)
AGATACGTGGTGGTGCTAACGAAGGCGGACAAGTCGGACAATTCTGTGTC
GAGGAAGGTTCTGGACGGAGTCGTGAGCGCGCTCCGGGAGGCAGGGGTCT
CCCGCACGCCCGTCGTGCTCACTAGCGCTGCTTCCAAGCTGGGGAGAGAT
GGAATGTGGAGGTAGAGATACGTGGTGGTGCTAACGAAGGCGGACAAGTC
GGACAATTCTGTGTCGAGGAAGGTTCTGGACGGAGTCGTGAGCGCGCTCC
GGGAGGCAGGGGTCTCCCGCACGCCCGTCGTGCTCACTAGCGCTGCTTCC
AAGCTGGGGAGAGATGGAATGTGGAGGTAG
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