mRNA_L-elsbetiae_contig16348.4320.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16348.4320.1
Unique NamemRNA_L-elsbetiae_contig16348.4320.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16348.4320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16348contigL-elsbetiae_contig16348:2491..3747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionFAD synthetase
Ec32 orthologEc-01_006670.1
Exons1
Model size1257
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.8307319-CDS-L-elsbetiae_contig16348:2490..27571622815674.8307319-CDS-L-elsbetiae_contig16348:2490..2757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16348 2491..2757 +
1691683030.2490146-CDS-L-elsbetiae_contig16348:2490..27571691683030.2490146-CDS-L-elsbetiae_contig16348:2490..2757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16348 2491..2757 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.8455935-UTR-L-elsbetiae_contig16348:2757..37471622815674.8455935-UTR-L-elsbetiae_contig16348:2757..3747Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16348 2758..3747 +
1691683030.2613444-UTR-L-elsbetiae_contig16348:2757..37471691683030.2613444-UTR-L-elsbetiae_contig16348:2757..3747Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16348 2758..3747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16348.4320.1prot_L-elsbetiae_contig16348.4320.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16348 2491..2757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16348.4320.1

>prot_L-elsbetiae_contig16348.4320.1 ID=prot_L-elsbetiae_contig16348.4320.1|Name=mRNA_L-elsbetiae_contig16348.4320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
ASGGAGGIIRTSTSTSTTSITTSASSGKACLQPDRKVRGGGWRGLAGLIG
WLPGTTVVLALVLAAVGLRSSAGSSRGAGHGTAPGKRD*
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mRNA from alignment at L-elsbetiae_contig16348:2491..3747+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16348.4320.1 ID=mRNA_L-elsbetiae_contig16348.4320.1|Name=mRNA_L-elsbetiae_contig16348.4320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1257bp|location=Sequence derived from alignment at L-elsbetiae_contig16348:2491..3747+ (Laminarionema elsbetiae ELsaHSoW15)
GCTTCTGGAGGGGCCGGCGGGATCATCCGCACCAGCACCAGCACCAGCAC
CACCAGCATCACCACCTCTGCTAGCTCAGGCAAAGCGTGTCTGCAACCCG
ACCGGAAAGTGCGCGGTGGCGGGTGGCGGGGTTTAGCTGGATTGATTGGG
TGGTTGCCTGGGACCACCGTCGTGCTGGCTCTGGTGCTGGCGGCGGTTGG
GCTGCGCTCGTCAGCCGGATCTTCTAGGGGAGCCGGGCACGGCACCGCTC
CAGGCAAAAGGGACTGACTTTTAGCAACGAACAGCGGCCCACACCCCGGG
CAGATCGTGTATTTTGGGGGTACTGCCGGTAGTTGGGGTTCTGGTAGCGG
TGGAAGAGGGTGGCAGTATTTTTGTTCGGTGGGTGATACAAGAGTGCGTG
CCAAGGTAGTTTCCCTTGTTAGCTACATACGGCGGCATGGACGGTGTATT
ACCTGCATTGTGAAAGATTTAAGCTCTTGCGCCCCCCCCTCTTTCCTGCT
GTAGAGTGCCCCTGAGGGCACATTCGCTGTTGGTTGAGGCTCTTTAATAA
ACATTGGTGTGTTTTGACAACGTTTGGGTTGTCTTGAGTGCGAGTGCGAG
TGCGAGTGCGAGTGCGCCCCCCATTTCTTTGCTTCGGGCTGTGGAGTGCC
TGCCCGTGACGGGGCATTCGTGTGTTTTTACAAAAAAAATGTTCTTTATT
GCCAGTGCAAGTGCGAGTCGAGTGGTCGTATGTCGGAAATGTCTGGCCCG
TGTATCAATGTGCTGGGTCCAGATCTAGTGTTTGAATGAAGGCTGTGATA
ACAAGTCGGTGGGAAACTGGAAGTGTCTTGTATGTGTTCTTGTGGTTTAG
CCGGAGAACATTGATGTATGACGGCGAAGCTTCCGGCCTTCGTGTTTATG
TAAGTGGGTAACGACCTCGATATGAGTCTTTTACGCAGAGTTGCGGTGAT
GGTCCGGTCTTGTTTCAATGCTTTTCGAGCGTAATTTTTTTCAACATTTT
TTTCGAATTTTATCTTCGGCTTTGCCGTTTTGAGGGCGCTGTCGGGTGGG
CGATATTTTCATGCAATAGCAGATGGGATTTTCGCCTACGGCAGCGGGCA
ATGTATGATATAAATATGTACAGAATGTCGGTACATACAACAACAGTACC
GTAGGTGTGCGAAGGTTCGCACCCCCGTGTTAGCATTTTTCTAAAGCGTA
TTTCTCCACAACCAGAAGGGTGCGAACAGTAACTGATACCTCTCTGGAAA
GCCCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16348:2491..3747+

>mRNA_L-elsbetiae_contig16348.4320.1 ID=mRNA_L-elsbetiae_contig16348.4320.1|Name=mRNA_L-elsbetiae_contig16348.4320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig16348:2491..3747+ (Laminarionema elsbetiae ELsaHSoW15)
GCTTCTGGAGGGGCCGGCGGGATCATCCGCACCAGCACCAGCACCAGCAC
CACCAGCATCACCACCTCTGCTAGCTCAGGCAAAGCGTGTCTGCAACCCG
ACCGGAAAGTGCGCGGTGGCGGGTGGCGGGGTTTAGCTGGATTGATTGGG
TGGTTGCCTGGGACCACCGTCGTGCTGGCTCTGGTGCTGGCGGCGGTTGG
GCTGCGCTCGTCAGCCGGATCTTCTAGGGGAGCCGGGCACGGCACCGCTC
CAGGCAAAAGGGACTGAGCTTCTGGAGGGGCCGGCGGGATCATCCGCACC
AGCACCAGCACCAGCACCACCAGCATCACCACCTCTGCTAGCTCAGGCAA
AGCGTGTCTGCAACCCGACCGGAAAGTGCGCGGTGGCGGGTGGCGGGGTT
TAGCTGGATTGATTGGGTGGTTGCCTGGGACCACCGTCGTGCTGGCTCTG
GTGCTGGCGGCGGTTGGGCTGCGCTCGTCAGCCGGATCTTCTAGGGGAGC
CGGGCACGGCACCGCTCCAGGCAAAAGGGACTGA
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