mRNA_L-elsbetiae_contig16295.4300.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16295.4300.1
Unique NamemRNA_L-elsbetiae_contig16295.4300.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16295.4300.1 vs. uniprot
Match: D7G522_ECTSI (MYND-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G522_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 8.750e-13
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 KVKQCSLCNEVWYCGQECQTSDWKAGHKTECSRK 102
            +VKQCSLCNEVWYCG ECQ SDW  GHK +CSRK
Sbjct:  368 QVKQCSLCNEVWYCGNECQASDWSKGHKNDCSRK 401          
BLAST of mRNA_L-elsbetiae_contig16295.4300.1 vs. uniprot
Match: UPI000440B3FC (hypothetical protein n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000440B3FC)

HSP 1 Score: 55.8 bits (133), Expect = 4.590e-8
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 1
Query:    1 KVKQCSLCNEVWYCGQECQTSDWKAGHKTECSR 99
            K+++CS C + WYC +ECQT DWK GHK  C+R
Sbjct:  271 KLERCSRCRKAWYCSKECQTKDWKIGHKANCNR 303          
BLAST of mRNA_L-elsbetiae_contig16295.4300.1 vs. uniprot
Match: A0A7S2UI28_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UI28_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.940e-8
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 1
Query:    1 KVKQCSLCNEVWYCGQECQTSDWKAGHKTECSR 99
            K+K+C+ C  VWYCG+ECQ  DWK GHK +C +
Sbjct:  356 KLKKCTRCKAVWYCGRECQLKDWKLGHKVDCCK 388          
BLAST of mRNA_L-elsbetiae_contig16295.4300.1 vs. uniprot
Match: A0A150GG83_GONPE (MYND-type domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GG83_GONPE)

HSP 1 Score: 51.6 bits (122), Expect = 1.540e-6
Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 1
Query:    1 KVKQCSLCNEVWYCGQECQTSDWKAGHKTECSRKK 105
            +++QC+ C EV YCG ECQ + W+A HK+ECSR++
Sbjct: 1021 RLRQCTGCREVRYCGPECQRAHWRAAHKSECSRQR 1055          
BLAST of mRNA_L-elsbetiae_contig16295.4300.1 vs. uniprot
Match: A0A0K9QTE9_SPIOL (MYND-type domain-containing protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QTE9_SPIOL)

HSP 1 Score: 49.3 bits (116), Expect = 1.020e-5
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1
Query:    1 KVKQCSLCNEVWYCGQECQTSDWKAGHKTECS 96
            + ++CS+C  V YC + CQT DWKAGHK ECS
Sbjct:  297 EFRRCSVCGVVNYCSRGCQTLDWKAGHKVECS 328          
BLAST of mRNA_L-elsbetiae_contig16295.4300.1 vs. uniprot
Match: A0A835SB76_CHLIN (MYND-type domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SB76_CHLIN)

HSP 1 Score: 48.1 bits (113), Expect = 2.580e-5
Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 1
Query:    4 VKQCSLCNEVWYCGQECQTSDWKAGHKTECSR 99
             ++C  C    YC Q+CQT DW+AGHK EC R
Sbjct:  729 TRKCGQCRRRRYCSQDCQTKDWRAGHKAECKR 760          
BLAST of mRNA_L-elsbetiae_contig16295.4300.1 vs. uniprot
Match: A0A409YL39_9AGAR (MYND-type domain-containing protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409YL39_9AGAR)

HSP 1 Score: 48.1 bits (113), Expect = 2.580e-5
Identity = 18/32 (56.25%), Postives = 22/32 (68.75%), Query Frame = 1
Query:    7 KQCSLCNEVWYCGQECQTSDWKAGHKTECSRK 102
            ++CS C+   YC +ECQT DWKAGHK  C  K
Sbjct:  481 RKCSACSTTLYCSKECQTEDWKAGHKVVCKLK 512          
BLAST of mRNA_L-elsbetiae_contig16295.4300.1 vs. uniprot
Match: A0A166JEV4_9AGAM (MYND-type domain-containing protein n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A166JEV4_9AGAM)

HSP 1 Score: 47.8 bits (112), Expect = 3.550e-5
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 1
Query:    4 VKQCSLCNEVWYCGQECQTSDWKAGHKTECSR 99
            + +CS C+ V YC + CQT DW AGHKT+C++
Sbjct:  506 LMKCSGCSTVTYCSKTCQTKDWSAGHKTQCTK 537          
BLAST of mRNA_L-elsbetiae_contig16295.4300.1 vs. uniprot
Match: A0A7S2FCS6_9STRA (Hypothetical protein n=3 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FCS6_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 3.550e-5
Identity = 15/32 (46.88%), Postives = 24/32 (75.00%), Query Frame = 1
Query:    4 VKQCSLCNEVWYCGQECQTSDWKAGHKTECSR 99
            + +CS C   +YCG++CQ +DW+ GHK+EC +
Sbjct:  114 IMKCSKCKSRYYCGRDCQMTDWREGHKSECKK 145          
BLAST of mRNA_L-elsbetiae_contig16295.4300.1 vs. uniprot
Match: A0A067CXE4_SAPPC (MYND-type domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXE4_SAPPC)

HSP 1 Score: 47.0 bits (110), Expect = 3.790e-5
Identity = 19/31 (61.29%), Postives = 21/31 (67.74%), Query Frame = 1
Query:   13 CSLCNEVWYCGQECQTSDWKAGHKTECSRKK 105
            C+ C  V YC +ECQT DWKAGHK  C  KK
Sbjct:  135 CARCISVRYCSKECQTEDWKAGHKRACKPKK 165          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16295.4300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G522_ECTSI8.750e-1379.41MYND-type domain-containing protein n=1 Tax=Ectoca... [more]
UPI000440B3FC4.590e-857.58hypothetical protein n=1 Tax=Stereum hirsutum (str... [more]
A0A7S2UI28_9STRA4.940e-857.58Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A150GG83_GONPE1.540e-654.29MYND-type domain-containing protein n=1 Tax=Gonium... [more]
A0A0K9QTE9_SPIOL1.020e-559.38MYND-type domain-containing protein n=2 Tax=Spinac... [more]
A0A835SB76_CHLIN2.580e-553.13MYND-type domain-containing protein n=1 Tax=Chlamy... [more]
A0A409YL39_9AGAR2.580e-556.25MYND-type domain-containing protein n=1 Tax=Gymnop... [more]
A0A166JEV4_9AGAM3.550e-553.13MYND-type domain-containing protein n=1 Tax=Peniop... [more]
A0A7S2FCS6_9STRA3.550e-546.88Hypothetical protein n=3 Tax=Florenciella parvula ... [more]
A0A067CXE4_SAPPC3.790e-561.29MYND-type domain-containing protein n=3 Tax=Saprol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16295contigL-elsbetiae_contig16295:153..260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.8081-CDS-L-elsbetiae_contig16295:152..2601622815672.8081-CDS-L-elsbetiae_contig16295:152..260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16295 153..260 +
1691683029.0113397-CDS-L-elsbetiae_contig16295:152..2601691683029.0113397-CDS-L-elsbetiae_contig16295:152..260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16295 153..260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16295.4300.1prot_L-elsbetiae_contig16295.4300.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16295 153..260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16295.4300.1

>prot_L-elsbetiae_contig16295.4300.1 ID=prot_L-elsbetiae_contig16295.4300.1|Name=mRNA_L-elsbetiae_contig16295.4300.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=36bp
KVKQCSLCNEVWYCGQECQTSDWKAGHKTECSRKK*
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mRNA from alignment at L-elsbetiae_contig16295:153..260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16295.4300.1 ID=mRNA_L-elsbetiae_contig16295.4300.1|Name=mRNA_L-elsbetiae_contig16295.4300.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=108bp|location=Sequence derived from alignment at L-elsbetiae_contig16295:153..260+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGTGAAGCAGTGCTCCCTGTGCAACGAAGTCTGGTATTGCGGCCAGGA GTGCCAGACCAGCGACTGGAAAGCCGGCCACAAGACCGAGTGCAGCCGCA AGAAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16295:153..260+

>mRNA_L-elsbetiae_contig16295.4300.1 ID=mRNA_L-elsbetiae_contig16295.4300.1|Name=mRNA_L-elsbetiae_contig16295.4300.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=216bp|location=Sequence derived from alignment at L-elsbetiae_contig16295:153..260+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGTGAAGCAGTGCTCCCTGTGCAACGAAGTCTGGTATTGCGGCCAGGA
GTGCCAGACCAGCGACTGGAAAGCCGGCCACAAGACCGAGTGCAGCCGCA
AGAAGTGAAAGGTGAAGCAGTGCTCCCTGTGCAACGAAGTCTGGTATTGC
GGCCAGGAGTGCCAGACCAGCGACTGGAAAGCCGGCCACAAGACCGAGTG
CAGCCGCAAGAAGTGA
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