mRNA_L-elsbetiae_contig16274.4286.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16274.4286.1
Unique NamemRNA_L-elsbetiae_contig16274.4286.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16274.4286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16274contigL-elsbetiae_contig16274:983..1980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_000500.1
Exons2
Model size609
Cds size609
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.7689466-CDS-L-elsbetiae_contig16274:982..15351622815671.7689466-CDS-L-elsbetiae_contig16274:982..1535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16274 983..1535 +
1691683028.299871-CDS-L-elsbetiae_contig16274:982..15351691683028.299871-CDS-L-elsbetiae_contig16274:982..1535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16274 983..1535 +
1622815671.7811375-CDS-L-elsbetiae_contig16274:1924..19801622815671.7811375-CDS-L-elsbetiae_contig16274:1924..1980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16274 1925..1980 +
1691683028.311142-CDS-L-elsbetiae_contig16274:1924..19801691683028.311142-CDS-L-elsbetiae_contig16274:1924..1980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16274 1925..1980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16274.4286.1prot_L-elsbetiae_contig16274.4286.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16274 983..1980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16274.4286.1

>prot_L-elsbetiae_contig16274.4286.1 ID=prot_L-elsbetiae_contig16274.4286.1|Name=mRNA_L-elsbetiae_contig16274.4286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
QHEYQHQLEFTHEGSTATSTEAVRGGGQRGRGGARSGKSLNGTGARGRTL
AVAADRRRAERSLRHGVGQDLLDVHGGDAREAQRTRWVMRMQKQMEEKQP
VDSARAGPRPRVGGCGSSSSSDAGQALPLPSHSPAPTPSRHTSASSAFRL
RDLATSNEATPPETGKQSSGVVGRTRVSHGWRRNLQGKAREVICVDCDTD
DE*
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mRNA from alignment at L-elsbetiae_contig16274:983..1980+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16274.4286.1 ID=mRNA_L-elsbetiae_contig16274.4286.1|Name=mRNA_L-elsbetiae_contig16274.4286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=998bp|location=Sequence derived from alignment at L-elsbetiae_contig16274:983..1980+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCACGAGTATCAACACCAGCTGGAGTTCACTCACGAAGGAAGCACCGC
TACCTCGACAGAAGCGGTGCGGGGGGGGGGGCAAAGAGGGAGAGGTGGTG
CCCGAAGTGGCAAGTCGCTCAACGGTACTGGAGCTCGCGGGAGAACGTTG
GCTGTGGCTGCGGACAGGAGAAGGGCGGAGCGCAGCTTGCGGCACGGGGT
TGGCCAAGACCTGCTAGATGTTCATGGCGGCGACGCAAGGGAAGCGCAAA
GGACTCGATGGGTTATGCGGATGCAGAAGCAGATGGAGGAGAAACAGCCC
GTCGATTCCGCACGAGCAGGGCCTCGCCCAAGGGTAGGGGGCTGCGGCTC
GTCTTCGTCGTCAGACGCGGGGCAGGCTCTGCCTTTACCTTCGCATTCGC
CTGCACCTACTCCCTCACGGCACACATCCGCATCCTCAGCGTTTCGCCTT
CGTGACCTCGCCACCAGCAATGAGGCTACACCGCCGGAGACGGGGAAACA
AAGCAGCGGTGTGGTGGGACGCACGCGGGTGAGTCATGGCTGGCGTCGCA
ATCGTCGTGGTGCTGGTGTTCGCTTCGAAATGGTTGACAAAAGGGTGTTT
GTTGACGTGTTTGTGATACAGCAGTACAGACACAGCTAGTAGTTTTCGTC
TATGAGAAGCCGATGGCGGTCAACTTGAAAAATCAGCACCGCCTATGTAT
GCATGTGCCACAGTAGTTTGCCGGTCTATTGCCAGTGACGGTGCTATATG
CGTGGCAAGGCGGCCAAGGCACCCAGTTTTTTTTCTCAGCACCATACTTG
TAGCTCTGTACTGCTGTTTTTGCTAGCATTGAAAACGGGACGAGAGACAA
CCCTCACGTCGCGGAAGTTTTTCTTCTGAAAGCGCTTCGGTTCTTGCTCT
GGTCATGACAGGCCTCACCCAGCACTTGCAACGAGGGTGCAGTCCAAGGC
AAAGCTCGAGAGGTGATTTGCGTGGACTGTGACACCGACGACGAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16274:983..1980+

>mRNA_L-elsbetiae_contig16274.4286.1 ID=mRNA_L-elsbetiae_contig16274.4286.1|Name=mRNA_L-elsbetiae_contig16274.4286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig16274:983..1980+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCACGAGTATCAACACCAGCTGGAGTTCACTCACGAAGGAAGCACCGC
TACCTCGACAGAAGCGGTGCGGGGGGGGGGGCAAAGAGGGAGAGGTGGTG
CCCGAAGTGGCAAGTCGCTCAACGGTACTGGAGCTCGCGGGAGAACGTTG
GCTGTGGCTGCGGACAGGAGAAGGGCGGAGCGCAGCTTGCGGCACGGGGT
TGGCCAAGACCTGCTAGATGTTCATGGCGGCGACGCAAGGGAAGCGCAAA
GGACTCGATGGGTTATGCGGATGCAGAAGCAGATGGAGGAGAAACAGCCC
GTCGATTCCGCACGAGCAGGGCCTCGCCCAAGGGTAGGGGGCTGCGGCTC
GTCTTCGTCGTCAGACGCGGGGCAGGCTCTGCCTTTACCTTCGCATTCGC
CTGCACCTACTCCCTCACGGCACACATCCGCATCCTCAGCGTTTCGCCTT
CGTGACCTCGCCACCAGCAATGAGGCTACACCGCCGGAGACGGGGAAACA
AAGCAGCGGTGTGGTGGGACGCACGCGGGTGAGTCATGGCTGGCGTCGCA
ATCCAGCACGAGTATCAACACCAGCTGGAGTTCACTCACGAAGGAAGCAC
CGCTACCTCGACAGAAGCGGTGCGGGGGGGGGGGCAAAGAGGGAGAGGTG
GTGCCCGAAGTGGCAAGTCGCTCAACGGTACTGGAGCTCGCGGGAGAACG
TTGGCTGTGGCTGCGGACAGGAGAAGGGCGGAGCGCAGCTTGCGGCACGG
GGTTGGCCAAGACCTGCTAGATGTTCATGGCGGCGACGCAAGGGAAGCGC
AAAGGACTCGATGGGTTATGCGGATGCAGAAGCAGATGGAGGAGAAACAG
CCCGTCGATTCCGCACGAGCAGGGCCTCGCCCAAGGGTAGGGGGCTGCGG
CTCGTCTTCGTCGTCAGACGCGGGGCAGGCTCTGCCTTTACCTTCGCATT
CGCCTGCACCTACTCCCTCACGGCACACATCCGCATCCTCAGCGTTTCGC
CTTCGTGACCTCGCCACCAGCAATGAGGCTACACCGCCGGAGACGGGGAA
ACAAAGCAGCGGTGTGGTGGGACGCACGCGGGTGAGTCATGGCTGGCGTC
GCAATCTCCAAGGCAAAGCTCGAGAGGTGATTTGCGTGGACTGTGACACC
GACGACGAGTAATCCAAGGCAAAGCTCGAGAGGTGATTTGCGTGGACTGT
GACACCGACGACGAGTAA
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