mRNA_L-elsbetiae_contig1610.4193.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1610.4193.1
Unique NamemRNA_L-elsbetiae_contig1610.4193.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1610.4193.1 vs. uniprot
Match: D7G396_ECTSI (Fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G396_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 3.650e-38
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 2 
Query:    2 GWLDYLSPSFVKDALETCPTECVFTNDRSVLLQADGVLFHGPTLQRRDAFPKEKPAGAAYVFVNLEPTTYTPVKMLLQDKRLMSNFDLAMTYDRSSD 292
            GWLDYL PSFV DA + C TECVFTNDRS+L +ADGVLFH PT  ++D FPK+KP  A YVF NLEPTTY  V+ LL++K+ MS FDL+MTY+R+SD
Sbjct:  122 GWLDYLRPSFVNDARDICATECVFTNDRSLLPRADGVLFHLPTFNKKDGFPKQKPPAADYVFANLEPTTYENVQPLLRNKQFMSKFDLSMTYERNSD 218
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BLAST of mRNA_L-elsbetiae_contig1610.4193.1 vs. uniprot
Match: A0A6H5KXC7_9PHAE (Fucosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC7_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 4.010e-38
Identity = 67/97 (69.07%), Postives = 78/97 (80.41%), Query Frame = 2 
Query:    2 GWLDYLSPSFVKDALETCPTECVFTNDRSVLLQADGVLFHGPTLQRRDAFPKEKPAGAAYVFVNLEPTTYTPVKMLLQDKRLMSNFDLAMTYDRSSD 292
            GWLDYL PSFV DA + C TECVFTNDRS+L +ADGVLFH PT  R+D FPK+KP    YVF NLEPTTY  V+ LL+DK+LMS FDL+MTY+R+SD
Sbjct:  418 GWLDYLRPSFVNDARDICATECVFTNDRSLLPRADGVLFHLPTFNRKDGFPKQKPPAVDYVFANLEPTTYKNVQPLLRDKQLMSKFDLSMTYERNSD 514
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1610.4193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G396_ECTSI3.650e-3867.01Fucosyltransferase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KXC7_9PHAE4.010e-3869.07Fucosyltransferase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1610contigL-elsbetiae_contig1610:9133..11433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size296
Cds size294
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1610.4193.1prot_L-elsbetiae_contig1610.4193.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1610 9133..11432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.920371-CDS-L-elsbetiae_contig1610:9132..92171622815664.920371-CDS-L-elsbetiae_contig1610:9132..9217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1610 9133..9217 +
1691683024.109597-CDS-L-elsbetiae_contig1610:9132..92171691683024.109597-CDS-L-elsbetiae_contig1610:9132..9217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1610 9133..9217 +
1622815664.9370437-CDS-L-elsbetiae_contig1610:9878..100371622815664.9370437-CDS-L-elsbetiae_contig1610:9878..10037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1610 9879..10037 +
1691683024.125839-CDS-L-elsbetiae_contig1610:9878..100371691683024.125839-CDS-L-elsbetiae_contig1610:9878..10037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1610 9879..10037 +
1622815664.9488144-CDS-L-elsbetiae_contig1610:11382..114321622815664.9488144-CDS-L-elsbetiae_contig1610:11382..11432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1610 11383..11432 +
1691683024.140021-CDS-L-elsbetiae_contig1610:11382..114321691683024.140021-CDS-L-elsbetiae_contig1610:11382..11432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1610 11383..11432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1610.4193.1

>prot_L-elsbetiae_contig1610.4193.1 ID=prot_L-elsbetiae_contig1610.4193.1|Name=mRNA_L-elsbetiae_contig1610.4193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
GVAGLPFALFRQGRPGDLPYRMCLHQRQERSPPGRRRAVPRPDVAEAGRI
PEGEACRGGLRVCQPRAHNLHAREDAPSRQTVDVQLRPGDDVRSEQRR
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mRNA from alignment at L-elsbetiae_contig1610:9133..11433+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1610.4193.1 ID=mRNA_L-elsbetiae_contig1610.4193.1|Name=mRNA_L-elsbetiae_contig1610.4193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2301bp|location=Sequence derived from alignment at L-elsbetiae_contig1610:9133..11433+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTGGCTGGACTACCTTTCGCCCTCTTTCGTCAAGGACGCCCTGGAGA
CCTGCCCTACAGAATGTGTCTTCACCAACGACAGGGTAAGGACGTTTATC
TCTCTGTTTCTCTCTTCCCTCTGTCGCTTCTTCGTGAGGTCGGGAGCCAG
ATTGCAACGGTGAAAACAACTTGTTGCACACGGCTCATACCCCCCTCAGC
AACTAGGCCGTCGTATGTTGCTCTGTACCAGTATTTATTTCCGCGCGCCT
GGCGATGCAACGTTTTTCGTGAGCCCTCCCACCCAAATAAATCGTGCAAT
ATCGGGCTGAATCCAGGATTCGCTGAGGCTACACGATGAAGTGGGGCGTG
ATCTTGGGAGTACGGGTTGTGGACGTTTCCAAGAATTTTCTGCCCACATT
GCAACAAGAGGGACAGCGCCGCACCCGGCGGTCGCTCTGGTGGTGCACGC
TTCCGTGGGTGTAGACGCGGGTGTGGGTGCCGTAAGCGGAATGCGCAGAA
CGCTTTCGGCGCGGTCGATCTCCCTGCGCGCTGCTTGTTCAGAATGAGAG
GTTATAAGCATCGGCCCTGGGGTGGCAAAGGCAAAGCTAAAACACTTTGC
TGTTTCAACAAACACCCCCGAATGTTGTTTTCTGCTGGGGGTTGTGCTGT
TTTCTTCTGGGGCTTACGGTTTGAAACGATTTCCGCGTGTGTGCTGTGTT
TCTTTTGGTGCTTCCCCGGCGGGTTGTATCGCTGTTCGTGCTCCAGAGCG
TTCTCCTCCAGGCAGACGGCGTGCTGTTCCACGGCCCGACGTTGCAGAGG
CGGGACGCATTCCCGAAGGAGAAGCCTGCAGGGGCGGCCTACGTGTTTGT
CAACCTCGAGCCCACAACCTACACGCCCGTGAAGATGCTCCTTCAAGACA
AACGGGTATGTAAGGATTTACATGTTTTTAGTTTTGTACATCGGTTGTTC
ACCCTTTTTCCTGTGTAACCCCGGCTGATGCGTCTCGTGTCGTACAGAGA
CGACACGTCGAAAGTTGTAGCAACACATACAGCTACACGCTCCCTAGAGA
CAAACGGAATGAGGGTTTTGTTTTATTTATTGTGTGCAACTACATACATG
GTCCATCGGTATGTATGTACTCGAAGTATGTTGTAAACCCCTTCCTGGGG
TACCTCGTCGTGTTGTACAGAGACCGTTACACCGAAATGTCCATTTAGTG
CACTATTTTGCCCGCCGGAAGCTGTAGCAGCACATACCGAGGATGTAGCA
GACGCCAGAAATGAAGGGACGGAAAGCGAACCACACACACACACAAAACA
CTGTCAACAGTCTACAGTTCAGCCTGCAAGAAAGTCCTTTCCGAGGGCAC
TACTGCTTCTAGTCAGACTGATCTTCCCTTGCCGCCCCCTGGCTACGAAA
TGTTTTTTTGTGTGTTAGACGGCAGAGCAGGTATATGCTGTCGGCACGAT
TATTGTCGGTTTATTTGCTTTTGTGTGACTGGTCGTCCTTTTGTATCCTG
GTTTTCGCGGTCCGGTCGCTTGATCGTTCGAGACCAAACCGGATAAGCGG
GTCCGTGAAAACATAATGTTTGGGTCCCGGTTACAGAATCAAAAGCGCGA
TGGCAAAGGTTGGCTCAAGACCTTGGTTGCTTCGCGAGCGGAAAGATAAA
GCTCTCCCGGAAGGGCGGGGTGGGGTCTGTGTGCCCGCGTAACCATCCAT
GACGCACGAAACCCCCAAATCACCCACGTAACCCGCAATGATCCCGTCGA
TAGTATCAGTGCCGTGTACGATGTAGCCAACGTAGACAAACACGAAGGCG
GTCGCCGCGTGCCGTCCTGCGAGCTTGTGGTTTGGTGTCAATTCGCATCC
AGATTGTTTTTGGGAAAGTGGGTGGTCTTGCGGACAATAAAGTACACTGT
ATGCACACGAGAGGGTAACAGCACGAGGTGTAGGTTCCATTGGCTGCGCT
TATCTACACACCCTACGAGGCTTTGAGGGCTTTTGTTGTGATATAAAACG
CGCAATAGGTTAAGCTCACAACGGCCATTGTGGTGTGTAGCCGACCTAGA
GATGATGGTGCATCAGCATACTATACACGCTGGCGTTTATTGCACGAGAG
ACGCGAACAGCGAAACATGACATGCTCGCTCTCGCAGAACTTGATTCTTT
GTGCGTTTTCAACCCGGCGTTTTATGCTCACATTTTCTATGGGAATATGT
GCATGCGTGCGCATGTCTGTATCCATCCTCGTTCTTGGGCTATGCACCAG
TTGATGTCCAACTTCGACCTGGCGATGACGTACGATCGGAGCAGCGACGT
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1610:9133..11433+

>mRNA_L-elsbetiae_contig1610.4193.1 ID=mRNA_L-elsbetiae_contig1610.4193.1|Name=mRNA_L-elsbetiae_contig1610.4193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig1610:9133..11433+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTGGCTGGACTACCTTTCGCCCTCTTTCGTCAAGGACGCCCTGGAGA
CCTGCCCTACAGAATGTGTCTTCACCAACGACAGGGGGGTGGCTGGACTA
CCTTTCGCCCTCTTTCGTCAAGGACGCCCTGGAGACCTGCCCTACAGAAT
GTGTCTTCACCAACGACAGGAGCGTTCTCCTCCAGGCAGACGGCGTGCTG
TTCCACGGCCCGACGTTGCAGAGGCGGGACGCATTCCCGAAGGAGAAGCC
TGCAGGGGCGGCCTACGTGTTTGTCAACCTCGAGCCCACAACCTACACGC
CCGTGAAGATGCTCCTTCAAGACAAACGGAGCGTTCTCCTCCAGGCAGAC
GGCGTGCTGTTCCACGGCCCGACGTTGCAGAGGCGGGACGCATTCCCGAA
GGAGAAGCCTGCAGGGGCGGCCTACGTGTTTGTCAACCTCGAGCCCACAA
CCTACACGCCCGTGAAGATGCTCCTTCAAGACAAACGGTTGATGTCCAAC
TTCGACCTGGCGATGACGTACGATCGGAGCAGCGACGTTTGATGTCCAAC
TTCGACCTGGCGATGACGTACGATCGGAGCAGCGACGT
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