mRNA_L-elsbetiae_contig16090.4188.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16090.4188.1
Unique NamemRNA_L-elsbetiae_contig16090.4188.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16090.4188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16090contigL-elsbetiae_contig16090:65..705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size643
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.1936665-UTR-L-elsbetiae_contig16090:64..3811622815664.1936665-UTR-L-elsbetiae_contig16090:64..381Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16090 65..381 +
1691683023.5200574-UTR-L-elsbetiae_contig16090:64..3811691683023.5200574-UTR-L-elsbetiae_contig16090:64..381Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16090 65..381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.2049873-CDS-L-elsbetiae_contig16090:381..7051622815664.2049873-CDS-L-elsbetiae_contig16090:381..705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16090 382..705 +
1691683023.535991-CDS-L-elsbetiae_contig16090:381..7051691683023.535991-CDS-L-elsbetiae_contig16090:381..705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16090 382..705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16090.4188.1prot_L-elsbetiae_contig16090.4188.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16090 382..705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16090.4188.1

>prot_L-elsbetiae_contig16090.4188.1 ID=prot_L-elsbetiae_contig16090.4188.1|Name=mRNA_L-elsbetiae_contig16090.4188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MEARPSRLRPLNPLLRGSTESRESFLRPPRYLVVTPLLLDRDQEGLTGSS
DFLPPLEPHMDELVHLHSMWAKLTRSSFFATGVSQAGAENRRTNLLQGTI
NVWVKIER
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mRNA from alignment at L-elsbetiae_contig16090:65..705+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16090.4188.1 ID=mRNA_L-elsbetiae_contig16090.4188.1|Name=mRNA_L-elsbetiae_contig16090.4188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=641bp|location=Sequence derived from alignment at L-elsbetiae_contig16090:65..705+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCTTCTAAGTAGTTGGTTTTCGGGCTCTTGGTGCGACTGATCCATCT
ACTACCCTTTTCTGAAAAGGATGCGTGTGAGCCGCTGTCACCCTAAAAAC
GTGATTCGGTCATAATTTTGTTTGCTGAAAGAAAGGAAGGAGCACCTGAA
GGGGGTGTTGGTCGGAGGGGGGTTGGCTTCCAACTTGTGCGCTGTATTCG
ATGTGTGGTAGTTTTTCTTTTTTGCGACAAAGGTTGCCCGTGTCAATCGA
TTGTCTGCCGAAGGGTGTGTGTTTGGGAGAAGAGTAAGAATTCACGTGGA
CTGAAGAGGTCTTCTTCATGGAGGCCCGCCCTTCCCGCCTGCGGCCACTG
AATCCGCTCCTGCGCGGTTCCACAGAGAGCCGAGAGTCGTTTCTTCGACC
ACCACGTTATCTCGTGGTGACTCCGCTTTTGCTTGACCGGGACCAAGAGG
GTTTGACTGGGAGCAGCGATTTTTTGCCCCCGTTAGAGCCTCACATGGAT
GAACTTGTCCACCTGCACAGCATGTGGGCTAAACTAACCCGGTCGTCTTT
TTTCGCGACGGGAGTTTCACAAGCGGGTGCTGAGAACAGACGCACAAACC
TTCTTCAAGGGACCATAAATGTGTGGGTGAAAATAGAACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16090:65..705+

>mRNA_L-elsbetiae_contig16090.4188.1 ID=mRNA_L-elsbetiae_contig16090.4188.1|Name=mRNA_L-elsbetiae_contig16090.4188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig16090:65..705+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGCCCGCCCTTCCCGCCTGCGGCCACTGAATCCGCTCCTGCGCGG
TTCCACAGAGAGCCGAGAGTCGTTTCTTCGACCACCACGTTATCTCGTGG
TGACTCCGCTTTTGCTTGACCGGGACCAAGAGGGTTTGACTGGGAGCAGC
GATTTTTTGCCCCCGTTAGAGCCTCACATGGATGAACTTGTCCACCTGCA
CAGCATGTGGGCTAAACTAACCCGGTCGTCTTTTTTCGCGACGGGAGTTT
CACAAGCGGGTGCTGAGAACAGACGCACAAACCTTCTTCAAGGGACCATA
AATGTGTGGGTGAAAATAGAACGGATGGAGGCCCGCCCTTCCCGCCTGCG
GCCACTGAATCCGCTCCTGCGCGGTTCCACAGAGAGCCGAGAGTCGTTTC
TTCGACCACCACGTTATCTCGTGGTGACTCCGCTTTTGCTTGACCGGGAC
CAAGAGGGTTTGACTGGGAGCAGCGATTTTTTGCCCCCGTTAGAGCCTCA
CATGGATGAACTTGTCCACCTGCACAGCATGTGGGCTAAACTAACCCGGT
CGTCTTTTTTCGCGACGGGAGTTTCACAAGCGGGTGCTGAGAACAGACGC
ACAAACCTTCTTCAAGGGACCATAAATGTGTGGGTGAAAATAGAACGG
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