mRNA_L-elsbetiae_contig16033.4161.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16033.4161.1
Unique NamemRNA_L-elsbetiae_contig16033.4161.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16033.4161.1 vs. uniprot
Match: D8LGI4_ECTSI (Cupin_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI4_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.980e-27
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1
Query:   10 KAQTMILNGQVPHLTGFTRAVFAPGDEVELHRHKSMDEVFYSAEGKGVIEVDGTVVQ 180
            K QTMILNGQVPHLTGFTRAVF+PGDEVELH H SMDEVFY+AEGKG IEVDGTVVQ
Sbjct:   77 KKQTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDGTVVQ 133          
BLAST of mRNA_L-elsbetiae_contig16033.4161.1 vs. uniprot
Match: A0A2M8L7A3_9BACT (Cupin domain-containing protein n=2 Tax=Candidatus Shapirobacteria TaxID=1752721 RepID=A0A2M8L7A3_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 3.370e-11
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 PQTKAQTMILNGQVPHLTGFTRAVFAPGDEVELHRHKSMDEVFYSAEGKGVIEVDGTVVQ 180
            P+ K Q +I NG++P LTGF++AVF PG   E HRH +M EV++  EG+  + + G  V+
Sbjct:   18 PEIKKQVLIKNGEIPQLTGFSQAVFKPGQACEEHRHPTMYEVYFLLEGEATLFISGREVK 77          
BLAST of mRNA_L-elsbetiae_contig16033.4161.1 vs. uniprot
Match: A0A7C3LG09_9CHLR (Cupin domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3LG09_9CHLR)

HSP 1 Score: 61.6 bits (148), Expect = 9.340e-11
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 1
Query:    1 PQTKAQTMILNGQVPHLTGFTRAVFAPGDEVELHRHKSMDEVFYSAEGKGVIEVDGT 171
            P+ K + M+  G +PH+T F++AVFAPG     H H  M EVF    G GVI +DGT
Sbjct:   18 PEIKKKVMLRQGDLPHITNFSQAVFAPGQTAVPHSHPDMAEVFLVLSGSGVITIDGT 74          
BLAST of mRNA_L-elsbetiae_contig16033.4161.1 vs. uniprot
Match: UPI001639F968 (cupin domain-containing protein n=1 Tax=Croceivirga lutea TaxID=1775167 RepID=UPI001639F968)

HSP 1 Score: 60.8 bits (146), Expect = 1.870e-10
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 PQTKAQTMILNGQVPHLTGFTRAVFAPGDEVELHRHKSMDEVFYSAEGKGVIEVDGTV 174
            P+ K +TMI +G++P L  F  AVF PG+EV LH+H +M EVFY  +GK    V+  V
Sbjct:   18 PEIKKKTMISSGEIPQLMMFGSAVFKPGEEVNLHKHDTMVEVFYIQKGKAEFTVENEV 75          
BLAST of mRNA_L-elsbetiae_contig16033.4161.1 vs. uniprot
Match: K9QQQ2_NOSS7 (Cupin domain-containing protein n=1 Tax=Nostoc sp. (strain ATCC 29411 / PCC 7524) TaxID=28072 RepID=K9QQQ2_NOSS7)

HSP 1 Score: 60.8 bits (146), Expect = 2.790e-10
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 1
Query:    1 PQTKAQTMILNGQVPHLTGFTRAVFAPGDEVELHRHKSMDEVFYSAEGKGVIEVDG 168
            P+ K Q M+  G +PHLT F++A FAPG     H H+ M EVF+   G G+I +DG
Sbjct:   18 PEIKKQVMLRFGDLPHLTNFSQARFAPGQTASAHAHQDMCEVFFVQAGAGIIRIDG 73          
BLAST of mRNA_L-elsbetiae_contig16033.4161.1 vs. uniprot
Match: B2IYD9_NOSP7 (Cupin 2, conserved barrel domain protein n=28 Tax=Nostocales TaxID=1161 RepID=B2IYD9_NOSP7)

HSP 1 Score: 60.5 bits (145), Expect = 2.910e-10
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1
Query:    1 PQTKAQTMILNGQVPHLTGFTRAVFAPGDEVELHRHKSMDEVFYSAEGKGVIEVDGT 171
            P+ K + M+  G +PHLT F++A FAPG     H H+ M EVF+   G GVI +DGT
Sbjct:   18 PEIKKKVMLRFGDLPHLTNFSQARFAPGQTAPGHAHQDMCEVFFVEAGSGVIHIDGT 74          
BLAST of mRNA_L-elsbetiae_contig16033.4161.1 vs. uniprot
Match: A0A1Z4G2U4_9CYAN (Cupin 2 domain-containing protein n=1 Tax=Calothrix sp. NIES-2098 TaxID=1954171 RepID=A0A1Z4G2U4_9CYAN)

HSP 1 Score: 60.5 bits (145), Expect = 2.970e-10
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 1
Query:    1 PQTKAQTMILNGQVPHLTGFTRAVFAPGDEVELHRHKSMDEVFYSAEGKGVIEVDG 168
            P+ K + M+  G +PHLT F++A FAPG     H H+ M EVF+   G GVI +DG
Sbjct:   18 PEIKKKVMLRFGDLPHLTNFSQARFAPGQSAPAHAHQDMSEVFFVESGAGVIYIDG 73          
BLAST of mRNA_L-elsbetiae_contig16033.4161.1 vs. uniprot
Match: A0A252DYP0_9NOSO (Cupin n=4 Tax=unclassified Nostoc TaxID=2593658 RepID=A0A252DYP0_9NOSO)

HSP 1 Score: 59.7 bits (143), Expect = 5.820e-10
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 1
Query:    1 PQTKAQTMILNGQVPHLTGFTRAVFAPGDEVELHRHKSMDEVFYSAEGKGVIEVDG 168
            P+ K + M+  G +PHLT F++A FAPG     H H+ M EVF+   G GVI +DG
Sbjct:   18 PEIKKKVMLRFGDLPHLTNFSQARFAPGQSAPAHAHQDMAEVFFVEAGLGVIHIDG 73          
BLAST of mRNA_L-elsbetiae_contig16033.4161.1 vs. uniprot
Match: A0A1Z4H894_9CYAN (Cupin 2 domain-containing protein n=1 Tax=Calothrix sp. NIES-2100 TaxID=1954172 RepID=A0A1Z4H894_9CYAN)

HSP 1 Score: 59.7 bits (143), Expect = 5.950e-10
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 1
Query:    1 PQTKAQTMILNGQVPHLTGFTRAVFAPGDEVELHRHKSMDEVFYSAEGKGVIEVDG 168
            PQ K + M+  G +PHLT F++A FAPG     H H+ M EVF+   G G I +DG
Sbjct:   18 PQIKKKVMLRFGDLPHLTNFSQARFAPGQSAPAHAHQDMSEVFFVEAGAGAIYIDG 73          
BLAST of mRNA_L-elsbetiae_contig16033.4161.1 vs. uniprot
Match: UPI0016839F32 (cupin domain-containing protein n=1 Tax=Tolypothrix sp. FACHB-123 TaxID=2692868 RepID=UPI0016839F32)

HSP 1 Score: 59.7 bits (143), Expect = 5.950e-10
Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 1
Query:    1 PQTKAQTMILNGQVPHLTGFTRAVFAPGDEVELHRHKSMDEVFYSAEGKGVIEVDG 168
            PQ K + M+  G +PHLT F++A FAPG     H H+ M EVF+   G G I VDG
Sbjct:   18 PQIKKKVMLRLGDLPHLTNFSQARFAPGQSAPAHAHQDMSEVFFVEVGAGTIYVDG 73          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16033.4161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGI4_ECTSI1.980e-2789.47Cupin_2 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A2M8L7A3_9BACT3.370e-1145.00Cupin domain-containing protein n=2 Tax=Candidatus... [more]
A0A7C3LG09_9CHLR9.340e-1147.37Cupin domain-containing protein n=1 Tax=Anaeroline... [more]
UPI001639F9681.870e-1048.28cupin domain-containing protein n=1 Tax=Croceivirg... [more]
K9QQQ2_NOSS72.790e-1046.43Cupin domain-containing protein n=1 Tax=Nostoc sp.... [more]
B2IYD9_NOSP72.910e-1047.37Cupin 2, conserved barrel domain protein n=28 Tax=... [more]
A0A1Z4G2U4_9CYAN2.970e-1046.43Cupin 2 domain-containing protein n=1 Tax=Calothri... [more]
A0A252DYP0_9NOSO5.820e-1046.43Cupin n=4 Tax=unclassified Nostoc TaxID=2593658 Re... [more]
A0A1Z4H894_9CYAN5.950e-1046.43Cupin 2 domain-containing protein n=1 Tax=Calothri... [more]
UPI0016839F325.950e-1048.21cupin domain-containing protein n=1 Tax=Tolypothri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16033contigL-elsbetiae_contig16033:204..392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionCupin 2, conserved barrel
Ec32 orthologEc-10_001950.1
Exons1
Model size189
Cds size168
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.2261755-CDS-L-elsbetiae_contig16033:203..3711622815662.2261755-CDS-L-elsbetiae_contig16033:203..371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16033 204..371 -
1691683022.2986515-CDS-L-elsbetiae_contig16033:203..3711691683022.2986515-CDS-L-elsbetiae_contig16033:203..371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16033 204..371 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.239166-UTR-L-elsbetiae_contig16033:371..3921622815662.239166-UTR-L-elsbetiae_contig16033:371..392Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16033 372..392 -
1691683022.3094814-UTR-L-elsbetiae_contig16033:371..3921691683022.3094814-UTR-L-elsbetiae_contig16033:371..392Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16033 372..392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16033.4161.1prot_L-elsbetiae_contig16033.4161.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16033 204..371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16033.4161.1

>prot_L-elsbetiae_contig16033.4161.1 ID=prot_L-elsbetiae_contig16033.4161.1|Name=mRNA_L-elsbetiae_contig16033.4161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
MILNGQVPHLTGFTRAVFAPGDEVELHRHKSMDEVFYSAEGKGVIEVDGT
VVQVI*
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mRNA from alignment at L-elsbetiae_contig16033:204..392-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16033.4161.1 ID=mRNA_L-elsbetiae_contig16033.4161.1|Name=mRNA_L-elsbetiae_contig16033.4161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=189bp|location=Sequence derived from alignment at L-elsbetiae_contig16033:204..392- (Laminarionema elsbetiae ELsaHSoW15)
CCCCAAACGAAAGCACAGACGATGATCCTCAACGGCCAGGTGCCGCACTT GACAGGCTTCACGCGGGCCGTATTCGCACCGGGGGACGAAGTTGAACTCC ACCGGCATAAGAGCATGGACGAGGTGTTTTACTCGGCGGAGGGGAAGGGC GTCATCGAAGTCGACGGCACCGTCGTGCAGGTGATTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16033:204..392-

>mRNA_L-elsbetiae_contig16033.4161.1 ID=mRNA_L-elsbetiae_contig16033.4161.1|Name=mRNA_L-elsbetiae_contig16033.4161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig16033:204..392- (Laminarionema elsbetiae ELsaHSoW15)
ATGATCCTCAACGGCCAGGTGCCGCACTTGACAGGCTTCACGCGGGCCGT
ATTCGCACCGGGGGACGAAGTTGAACTCCACCGGCATAAGAGCATGGACG
AGGTGTTTTACTCGGCGGAGGGGAAGGGCGTCATCGAAGTCGACGGCACC
GTCGTGCAGGTGATTTGAATGATCCTCAACGGCCAGGTGCCGCACTTGAC
AGGCTTCACGCGGGCCGTATTCGCACCGGGGGACGAAGTTGAACTCCACC
GGCATAAGAGCATGGACGAGGTGTTTTACTCGGCGGAGGGGAAGGGCGTC
ATCGAAGTCGACGGCACCGTCGTGCAGGTGATTTGA
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