mRNA_L-elsbetiae_contig160.4146.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig160.4146.1 vs. uniprot
Match: D7G732_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G732_ECTSI) HSP 1 Score: 1940 bits (5025), Expect = 0.000e+0 Identity = 1140/1778 (64.12%), Postives = 1284/1778 (72.22%), Query Frame = 1 Query: 4 AICDSISVTDPVSLRDSTGWDSQDF--GAGQRRQGHVSAEVTVWGQKHIVVFGGTNLRTDGVNNVYAQESSVSIMDITNPQNWTELEMVAYDGAPSAVFRPASFVWRNSLFVVCGHTEEPFTVTNEVWRADIQGFQVAPEGVWRPVNASKDDALGGQVTDISRYGHTATVLETDETNPSEIWAVVIGGMTGNQNGVETDLILHLSESADEFGCYEIALVNITSPYTCAQRIPVRPTETDGEWWRLDARLSSNSKPAARSYHAAASLVSDGQGSSSCLYMYGGRDYENSILFSDLWSLCPDSNFLGGSGETTFTWTELSPTGTLPKGRYGAVFVAGIEDNPYRILLYGGTGRYPNTYMADAFTKEYDAQMNAWADSSLAEGSSAYPVGRRDHTLEGVGDFLVLIAGITNDKDALNDMWNANYSSD---------------------CPAGTSTT-------------------------------NGVG----------------------TPSIGGCLPCEPGTFSLEGALEXXXXXXXXXXXXXXXXXXXXXXXTYRQQDSASGYCYXXXXXXXAPFEQASACMECPRGYYSSARGTECLPCR-AGTAGAAIGSGDAC-------------------------APCLAGEFSTEDGSSACEQCPAGTASAGARAXXXXXXXXXXXXTFASVGASSCQACAAGQYSVLDGAETCDLCPLGTYVDVPGELSSTSPAACEFCSQGSTTLAAGANKAEDCLPCPPGTWTVALADGGGCEECPRGEYTATYEAAQETNCTSCVGGFFADTIGSDVCSECPDEQLSYSGHATCLACITNTSCPLGPNGETCSGTGDCYLGVCNCTMGFDSVDCSSGTCDDCGGVFGFSFDSSVVVAAESGGAVSLALVRLVGTDGEVTVDIDVTGGNAT-TSDYGGTWPAQVVFADGQTESVVSLPIVLDNNRDEGCESVTLGVTAVTGTGSAVVDGGIHDVSAEAAVRIEEHDFTSAVLDTVPPEGAGVAAGGLSPATARVVIADTAV--ASDVTLSVVGTTPTDRSTSLPLDVLLLTELELTMTADLGRLAELLPGLVSEVQSSYSSARFGVATFTTTASSYGYQLLEPLLLNVYPVEVALDGLTTNGLGVSTS-PGAQVVGLYEAADDGTNQAGWGSDEDGDGDAFRVAVVVTGSLFAEETGFDSSDASTWAIPHDVTVLELRARLTSAGVHPVFLLTDLSLEDEYRALVGEIGFGAVIGVNQTAAAAANYNDDYLLKAMMDGLETLYAQAAILVQSDDGGFVASVIPAPDAFRDRAAGDEISFAVGMSATTPSASGGGEVVLSFQGRKTIVTVVREFTSCAAVSRSRASGSTAAAADDARAGWLQGFYTDEATKWTLDSTFSVGNETAGPFGVPARVLAVSCPGECSEQEAYQDIAMAVDSELPVVLKAYFYLPAASTLTAASASLDVSYSDGGAE---EGFGVVDFGAASSGDGTSGTWTQGVSAVYPTRVVSSARVKLSFSGTGEAAFAGVALYAHPDVACRCEAGYYLDVSSAPALACTPQPQCTYFEGWCTYCPAGFKCPQGGVLTACLAGEYSMGGYVECLPXXXXXXXXXGLGVPCGYGTSLSSATTNAQEQEGSTTSTAGTYGGSCTECPPGMECPGGGVFXXXXXXXXXXXXXXXXXXMPCFPGSFANSTAAAECAGCPSGSTSNYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAEHTAMWACEQCPDSQTTLAVGSASEQDCV 5010 A+CD +VTDPVSLRD TGWDSQD GAGQRRQGHVSAEVT W QKH VVFGGT++RTD VN+V +E+ V ++DITNP NWTELEMVAYDGAP AVFRPASFVW NSLFVVCGHTEEPFTVT E+WRADIQGF+ APEG+WRP+NASK DALGGQV DI RYGHTATVL T E NP+E WA+VIGGMTG+QN V+T+LILHLSES+DEF C E ALVNITS YTC QR P RPTET+GEW LD+RLS++SKPA+RSYHA ASL S+G G S+CLYMYGGR+YE SIL+SDLWSLCP SN+LG S +TTFTWTELSP GTLP GRYGAVFVAGI+D P+RILLYGGTGRYPN+YMAD FTKEYD MNAW DSSL +GSS YPVGRRDHTLEGVGDFLVLIAGI ND++AL DMWN N+SS CP GT+T NG G FSL GALE XXXXXXXXXXXXXXXXXXXXXX RQ+DS GYC APFEQ +AC+ AGTAGA++ SG A + ++ DG AC+ C +GT FA VG+SS AGQYS LDG+ETCDLCP+GTYVDV G +S V +GGGC++CPRGEYT+TYEAAQE NCT CVGGFFADTIGSD+C+ECP+EQLSYS H TCLACITNTSCP+GPNGETCSG GDCYLGVC+C+ GFDSVDCSSGTCD CGGVFGF +DS+VV AESGG VSL LVRLVGTDGEVTVD+DVTGGNAT SD+GGTWP QVVF DGQTES VSLP+V DN+ DEGCE VT+GVTAV+GTGSAVV+GGIHDVSAEA V IEE DFTSAV T P G GV G LSPATA VVIAD +SDVTLSVVG TPT+RST+LPLDVL L E T+ DL RL ELLPGLV+E+QSSYSS G+A FTTTASSY +Q+L ++LN+YPV VALD L T+ L S S PGAQVVGLYEAADD TN GW DEDGD +FR+A VVTGS FAEE GFD+SD TW +P+ VTV EL++RL+SAGVHP+FLLTD SLED Y ALV EIGFGAV+ V++T A A NYN+DYL +A+ GLE L++QAA+LVQSDDGGFVAS P PDAFR AAG E++FAV MSAT S +G GEV+LSFQG KT++TV+RE++SCAA SRSR +G+ AA AD+ARAGWLQ F+TDE +KWT DS FS+GNET GPFGV A VLAVSCPG CS+QEAYQDI +AVDSELP+V+KAYFYL A ST T AS SLDV+YS GG E FG +DF A+S+ TSGTWTQ + AVYPT+V++SARVK+SFSGTGEAAF GVAL+AHPDVACRCEAGYYLDV+SAP GGVLTACL GEYSMGGY+ECLP GLGVPCGYGT+ +S TTNAQE+EGST+S AGTYGGSC CP GMECPGGGVF XXXXXXXXXXXXXX MPCFPGSF N TAAAEC CP+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + E AMW CE+CPDS+TT+A GS S++DCV Sbjct: 26 AVCDGETVTDPVSLRDPTGWDSQDSIGGAGQRRQGHVSAEVTAWDQKHAVVFGGTSVRTDDVNDVVGREAGVFVVDITNPANWTELEMVAYDGAPHAVFRPASFVWDNSLFVVCGHTEEPFTVTTEIWRADIQGFEEAPEGLWRPINASKTDALGGQVYDIPRYGHTATVLNTGEANPTEAWAIVIGGMTGSQNSVDTNLILHLSESSDEFVCDEDALVNITSSYTCGQRTPTRPTETEGEWLYLDSRLSNDSKPASRSYHAVASLASNGLGGSACLYMYGGRNYEMSILYSDLWSLCPVSNYLGNSEDTTFTWTELSPAGTLPLGRYGAVFVAGIKDAPHRILLYGGTGRYPNSYMADEFTKEYDTYMNAWVDSSLEDGSSTYPVGRRDHTLEGVGDFLVLIAGINNDEEALQDMWNVNFSSPMCSSGNYMFFCESTSSPVCGVCPDGTATDRASYXXXXXXXXXXXXXXXXXXXXXXXXKYGNGDGGVVEATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSLTGALECXXXXXXXXXXXXXXXXXXXXXXXXRQEDSTLGYCSDCAAGTYAPFEQTTACLXXXXXXXXXXXXXXXXXXXXAGTAGASVASGPLADXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADGASSDG--ACQTCLSGT--------------------FAGVGSSSXXXXVAGQYSTLDGSETCDLCPVGTYVDVTGSMSIGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV---EGGGCQDCPRGEYTSTYEAAQEMNCTKCVGGFFADTIGSDLCTECPEEQLSYSAHETCLACITNTSCPIGPNGETCSGVGDCYLGVCDCSTGFDSVDCSSGTCDGCGGVFGFDYDSAVVGTAESGGTVSLTLVRLVGTDGEVTVDLDVTGGNATEVSDFGGTWPIQVVFDDGQTESAVSLPVVHDNDPDEGCEGVTIGVTAVSGTGSAVVNGGIHDVSAEAVVTIEEDDFTSAVRSTTLPTGLGVGGGELSPATAEVVIADATATWSSDVTLSVVGVTPTNRSTALPLDVLFLAESHSTVATDLERLVELLPGLVAEMQSSYSSVMLGLAAFTTTASSYDFQVLAQMMLNLYPVVVALDTLATSSLAASESAPGAQVVGLYEAADDATNDVGWRGDEDGD--SFRIAAVVTGSHFAEEAGFDTSDTGTWTVPNGVTVSELQSRLSSAGVHPIFLLTDSSLEDAYTALVDEIGFGAVVAVDETDAVANNYNEDYLPRALAGGLEALFSQAALLVQSDDGGFVASTTPEPDAFRSVAAGTEVTFAVDMSATVASDTGSGEVILSFQGHKTVITVLREYSSCAATSRSRVTGAAAATADNARAGWLQRFHTDEPSKWTFDSGFSLGNETLGPFGVSADVLAVSCPGGCSDQEAYQDITVAVDSELPMVVKAYFYLSALSTATVASVSLDVTYSSGGQSVEVESFGFLDFVASSA---TSGTWTQDIEAVYPTKVITSARVKISFSGTGEAAFTGVALFAHPDVACRCEAGYYLDVASAP----------------------------GGVLTACLDGEYSMGGYIECLPCPVGWLCSQGLGVPCGYGTTRTSLTTNAQEEEGSTSSVAGTYGGSCISCPAGMECPGGGVFQEXXXXXXXXXXXXXXMCMPCFPGSFTNDTAAAECEDCPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGYYGEQIAMWMCEECPDSKTTVAEGSTSQEDCV 1745
BLAST of mRNA_L-elsbetiae_contig160.4146.1 vs. uniprot
Match: A0A024UAK0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UAK0_9STRA) HSP 1 Score: 152 bits (384), Expect = 4.050e-33 Identity = 265/915 (28.96%), Postives = 375/915 (40.98%), Query Frame = 1 Query: 103 HVSAEVTVWGQKHIVVFGGTNLRTDG---VNNVYAQESSV---SIMDITNPQNWTELEMVAYDGAPSAVFRPASFVWRNSLFVVCGHTEEPFTVTNEVWRADIQGFQVAPEGVWRPVNASKDDALGGQVTDISRYGHTATVLETDETNPSEIWAVVIGGMTGNQNGVETDLILHL-SESADEFGCYEIALVNITSPYTCAQRIPVRPTETDGEWWRLDARLSSNSKPAARSYHAAA-SLVSDGQGSSSCLYMYGGRDYENSILFSDLWSLCPDSNFLGGSG--ETTFTWTELSPTGT-LPKGRYGAVFVAGIEDNPYRILLYGGTGRYPNTYMADAFTKEYDAQMNAWADSSLAEGSSAYPVGRRDHTLEGVGDF-LVLIAGITNDKDALNDMW--NANY-SSDCPAGTSTTNGVGTPSIGGCLPCEPGTFSLEGALEXXXXXXXXXXXXXXXXXXXXXXXTYRQQDSASGYCYXXXXXXXAPFEQASACMECPRGYYSSAR------GTECLPCRAGT---AGAAIGSGDACAPCLAGEFSTEDGSSACEQCPAGTASAGARAXXXXXXXXXXXXTFASVGASSCQ----------ACAAGQYSVLDGAETCDLCPLGTYVDVPGELS------------------------------STSPAACEFCSQGSTTLAAG-ANKAEDCLPCPPGTWTVALAD--------------GGGCEECPRGEYTATYEAAQETNCTSCVGGFFADTIGSDVCSECPDEQLSYSGHATCLACITNTSCPLGPNGETCSGTGDCYLGVCNCTMGFDSVDCSSGT---CDDCGGVFGFSFDSSVVVAAESGGAVSLALVRLVGTDGEVTVDIDVTGGNATTSDYGGT--WPAQVVFADGQTESVVSLPIVLDNNRDEGCESVTL 2595 H S+ ++ W IV+ GG + T N V + + S++ T +T +++ P + +S VW +++ + G + N++WR + G W V S +G +R GH+A V T+ T + A+V GGM G DL + S+SA C T P QR+ T G +P+ RSYH + S S+C +YGG+ ++ + D+WSLCP+ + + + TF WT+L+P+GT +P R+G + I P R +++GG+ R+PN Y+ DA+ EYD + W +L + RR H+ L+L+ G+ D+ +L D Y SS C AG+ T I C PC G F+ EGA +XXXXXXXXXXXXXXXXXXXXXXX Q ++ XXXXXXX T C PC AGT A A++ P + S+ XXXXXXXXXXXX ACAAG Y+ G TC LCP G+ V G S T AAC C + T + A C+PCP GT A + +TAT + AQ T CT+C + + GS C C S + +TCLAC T CP+G NG CS G C G C C C S GV F+ ++ ++ +V+L R G G ++V + GGNAT ++ G + W A V F D Q ++LP+ + +GC S+ L Sbjct: 52 HTSSILSSW----IVIVGGYAISTGQPVTTNTVMLFDPAAIPASVVIPTLSVGYTVPKLIPTSVQPGSRAEHSSIVWDDAIVIYGGQNTD---FMNDMWRLCVGSS--GSSGRWDEVTPS----MG--FVPSARKGHSALVYATNSTT---MVAMVFGGMLGTTYQDTNDLYFTIISKSAGSTAC------QTTRPIVLWQRVTTVTNSTGG-------------RPSPRSYHTMVLNPSSSASRFSNCAIVYGGQSTVDNTIMDDMWSLCPEPSTPSNTPVEQQTFVWTQLAPSGTKMPFPRFGHAAIVPI---PNRFIIWGGSYRFPNDYLNDAW--EYDLYLQRWIALALVVDGATPISPRRFHSATYTAQRQLILLGGL--DRYSLKDSSAIQCTYTSSQCAAGSVAMFCNATDEIV-CQPCPAGYFAAEGARQXXXXXXXXXXXXXXXXXXXXXXXXXNVQSASPSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTGCTPCAAGTFSSANASLXXXXXXXXXXXXXXXXXXXXXXXXYTPFPSMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXRVMGXXXXXVACAAGSYADSLGQSTCTLCPDGSXXSVVGSSSRAXXXXXXXXTFSKAIKSTCTPCPRSTYAHQTGLAACFACPANTFTNGSTLATSMAACIPCPVGTQLHAASGTXXXXXXXXXXXXXXXXXXXXXXXSFTATEDDAQATQCTACSPMQASSSYGSSSCDGCTLGTYSSNQWSTCLACAT--PCPIGRNGLVCSNQGTCAYGGCTCNSNSYGFACGSIVQLAATTTSGVIYFATSNNTILYDNVTNSVTLQ--REGGCRGALSVVVSTGGGNATATNGGLSVGWTATVTFTDQQVTKTLTLPL---HTVTQGCASLRL 914
BLAST of mRNA_L-elsbetiae_contig160.4146.1 vs. uniprot
Match: UPI001E558517 (hypothetical protein n=1 Tax=Methylobacterium sp. Leaf118 TaxID=2876562 RepID=UPI001E558517) HSP 1 Score: 61.6 bits (148), Expect = 1.880e-5 Identity = 64/217 (29.49%), Postives = 104/217 (47.93%), Query Frame = 1 Query: 2845 STSLPLDVLLLTELELTMTADLGRLAELLPGLVSEVQSSYSSARFGVATFTT-------TASSYGYQLLEPLLLNVYPVEVALDGLTTNGLGVSTSPGAQVVGLYEAADDGTNQAGWGSDEDGDGDAFRVAVVVTGSL------FAEETGFDSSDA--STWAIPHDV-TVLELRARLTSAGVHPVFLLTDLSLEDEYRALVGEIGFGAVIGVNQTAA 3447 S +LPLD +LL +L + + D+ L EL+P LVS+++S RFGVA+F + Y YQ L + + A+DGL G P +Q+ L + A ++ G+ + A R V+ T + FA G ++ DA + D +V ++RA L G+ P+F +T + Y ALV E+GFG V+ ++ ++ Sbjct: 99 SVTLPLDFVLLQDLSGSFSDDVATLQELVPDLVSKLESLQPDVRFGVASFVDKPTDPFGASGDYVYQTDLALTADASAFQAAVDGLVVRNGG--DIPESQIEALMQLALR-PSELGFRAG------ALRAVVLTTDAPPHVAGDFAS-AGPNNGDAVLDGGGLGEDYPSVDQVRAALLDGGIVPIFAVT-ADMVATYEALVTELGFGTVVTLSSDSS 304
BLAST of mRNA_L-elsbetiae_contig160.4146.1 vs. uniprot
Match: A0A835Y4Z7_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y4Z7_9CHLO) HSP 1 Score: 60.8 bits (146), Expect = 2.870e-5 Identity = 84/285 (29.47%), Postives = 111/285 (38.95%), Query Frame = 1 Query: 1615 SGDACAPCLAGEFSTEDGSSACEQCPAGT--ASAGARAXXXXXXXXXXXX--------------TFASVGASSCQACAAGQYSVLDGAETCDLCPLGTYVDVPGELSSTSPAACEFCSQGSTTLAAGAN---------------KAEDCLPCPPGTWTVALADGGGCEECPR-------------------GEY-TATYEAAQETNCTSCVGGFFADTIG--SDVCSECPDEQLSYSGHATCLACITNTSCPLGPNGETCSGTGDCYLGV----CNCTMGFDSVD 2298 SG++C PC G + E+GS+ CEQCPAG+ G+ XXXXXXXXXXX T++ GA+ C C AG Y G C CP TY D G C+ C +G TT N + +CLPCP T++ L G C+ CP G Y A ++ +C C F+ G +D+C S G C C + +G T D YL V C +GF S + Sbjct: 278 SGESCKPCPEGFTAVEEGSTKCEQCPAGSYVGKIGSNTFXXXXXXXXXXXXXXXXXXXXXXXXXTWSLGGATECIQCPAGSY----GRGFCRECPPATYQDEAGTEE------CKACPEGYTTKPGARNVLHCKICPAGGYIDAETGECLPCPEDTYSDTLGTVGSCKACPARTAAPKGSSHPGHCRLCPPGRYFVAGHDGEPTGHCLPCPINTFSSAEGLVADICEXXXXGTTSGEGATECTPCAPGSFYQVGVT------TPDPYLYVTANCAYCPVGFYSTE 546 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig160.4146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig160.4146.1 >prot_L-elsbetiae_contig160.4146.1 ID=prot_L-elsbetiae_contig160.4146.1|Name=mRNA_L-elsbetiae_contig160.4146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1601bp MDITNPQNWTELEMVAYDGAPSAVFRPASFVWRNSLFVVCGHTEEPFTVTback to top mRNA from alignment at L-elsbetiae_contig160:23782..41420+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig160.4146.1 ID=mRNA_L-elsbetiae_contig160.4146.1|Name=mRNA_L-elsbetiae_contig160.4146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=17639bp|location=Sequence derived from alignment at L-elsbetiae_contig160:23782..41420+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig160:23782..41420+ >mRNA_L-elsbetiae_contig160.4146.1 ID=mRNA_L-elsbetiae_contig160.4146.1|Name=mRNA_L-elsbetiae_contig160.4146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=9606bp|location=Sequence derived from alignment at L-elsbetiae_contig160:23782..41420+ (Laminarionema elsbetiae ELsaHSoW15)back to top |