mRNA_L-elsbetiae_contig16.4137.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16.4137.1
Unique NamemRNA_L-elsbetiae_contig16.4137.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16.4137.1 vs. uniprot
Match: A0A6H5KZD2_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD2_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 7.790e-25
Identity = 70/91 (76.92%), Postives = 72/91 (79.12%), Query Frame = 3 
Query:  216 PSAAGRGNPRPLLAGVFRKACDYCVRSKRGCNGGTPCEQXXXXXXXCTYSQRRKSGPRGRPL-PLRPQQGISS--------AVQTRTSARR 461
            PSAAGRG PRPLLAGVFRKACDYCVRSKRGCNGGTPC  XXXXXXX TYSQRRKSGPRGRPL P + QQ IS+         V  RTSARR
Sbjct:    3 PSAAGRGKPRPLLAGVFRKACDYCVRSKRGCNGGTPCXXXXXXXXXXTYSQRRKSGPRGRPLRPQQQQQAISARALPSPAVVVGNRTSARR 93
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BLAST of mRNA_L-elsbetiae_contig16.4137.1 vs. uniprot
Match: A0A836CIK1_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIK1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.560e-5
Identity = 27/53 (50.94%), Postives = 32/53 (60.38%), Query Frame = 3 
Query:  243 RPLLAGVFRKACDYCVRSKRGCNGGTPCEQXXXXXXX--CTYSQRRKSGPRGR 395
            R  + GV +KAC +CV+ KR C GG PCEQ         C Y QRRKSGP+ R
Sbjct:    3 RKEMQGVLKKACIWCVKEKRRCGGGHPCEQCVVRERGNKCAYEQRRKSGPKSR 55
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16.4137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZD2_9PHAE7.790e-2576.92Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A836CIK1_9STRA2.560e-550.94Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16contigL-elsbetiae_contig16:63169..64899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_004950.2
Exons3
Model size1329
Cds size1326
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16.4137.1prot_L-elsbetiae_contig16.4137.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16 63171..64899 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.7132087-CDS-L-elsbetiae_contig16:63170..636241622815658.7132087-CDS-L-elsbetiae_contig16:63170..63624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16 63171..63624 -
1691683019.8519478-CDS-L-elsbetiae_contig16:63170..636241691683019.8519478-CDS-L-elsbetiae_contig16:63170..63624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16 63171..63624 -
1622815658.7268305-CDS-L-elsbetiae_contig16:63638..642181622815658.7268305-CDS-L-elsbetiae_contig16:63638..64218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16 63639..64218 -
1691683019.8659725-CDS-L-elsbetiae_contig16:63638..642181691683019.8659725-CDS-L-elsbetiae_contig16:63638..64218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16 63639..64218 -
1622815658.7397296-CDS-L-elsbetiae_contig16:64607..648991622815658.7397296-CDS-L-elsbetiae_contig16:64607..64899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16 64608..64899 -
1691683019.8759928-CDS-L-elsbetiae_contig16:64607..648991691683019.8759928-CDS-L-elsbetiae_contig16:64607..64899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16 64608..64899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16.4137.1

>prot_L-elsbetiae_contig16.4137.1 ID=prot_L-elsbetiae_contig16.4137.1|Name=mRNA_L-elsbetiae_contig16.4137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=442bp
NFSCLEPRTVSARQEKSVRDQEPRSLIESTPRHHIACVVSPVRSTHLSIG
FRDLPGNTTKLHQPERTHEEGCPLLLDEATHGRYWPVSSARLVTTASGAS
AAATVAPRASSASDAAKAAPTHSAASPGRAAGLSLSAHSKESPPRSRQEP
PRGEKRRLRPRRPPAPPRCRRARATSPKAVTTKKTPPFRTTPPNTWRRWS
SSSSKSRSRSCTRTRRAKSPERKPRPLSLAGGVRRLLRQCRCRSPAAAAE
VASNNSPAPRPPPRLLPSLPSSRGRGLAEARRRRRRRRRRRTKAEREDVN
RQQQQQRLTIISAPAPSPAAPSSFLDEPASYLSKNRIISGGKAAPPRQHS
PLTVGAPLPPTLQLQLQRSSSLPTWARETPADAEQRRQQVHRSSASVGAV
PTSMTGPTTSGEGEGEAIHEITMQPWESNVHPPRSVTLVNMA
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mRNA from alignment at L-elsbetiae_contig16:63169..64899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16.4137.1 ID=mRNA_L-elsbetiae_contig16.4137.1|Name=mRNA_L-elsbetiae_contig16.4137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1731bp|location=Sequence derived from alignment at L-elsbetiae_contig16:63169..64899- (Laminarionema elsbetiae ELsaHSoW15)
AATTTTTCCTGCCTGGAGCCACGGACCGTGAGTGCTCGCCAAGAGAAATC
AGTTCGAGACCAGGAACCTAGAAGTTTGATCGAGAGCACGCCCCGTCACC
ACATTGCGTGCGTAGTTTCTCCCGTGCGCTCTACACACCTCTCGATCGGA
TTTAGAGACCTGCCAGGAAACACCACAAAATTGCATCAACCCGAGAGAAC
ACACGAGGAAGGATGCCCTCTGCTGCTGGACGAGGCAACCCACGGCCGCT
ACTGGCCGGTGTCTTCCGCAAGGCTTGTGACTACTGCGTCAGGTAAGAAG
CGCAGTTTATTGTGAACGCGTGTGCTTTTTCTGGTTCCATCGTCACTGAG
GCACGCTCCGTTGTCTGCTCGCTCGCACACGGCACGAAGTGAAGACACAC
CTGCACTTGAACCTGCCTGGCGCGCTCATTCTGCCTCTCCGTGACCTCAG
GCACAACGCTCACACGTTTTCTTCATGTCAACCGGCCTCTCCGTGCCCAC
GCACCCTCGCTGGCGGCGCGTTGTTCTTGTATGGTATTGTCGAGGCATGA
GATTGTCCGCCCGCCCGCCTCGCTCATCATTCTTTCCCCGCCAAGTAACA
CTGCTGAAATGACGTCAAGTTGTGTGTTCACCCACCCGTCGCTGCCTCGC
TCGCTCTACTCTTTCTTTCTTTCGCTCGCAGGAGCAAGCGCGGCTGCAAC
GGTGGCACCCCGTGCGAGCAGTGCATCCGACGCGGCCAAGGCTGCACCTA
CTCACAGCGCCGCAAGTCCGGGCCGCGCGGCCGGCCTCTCCCTCTCCGCC
CACAGCAAGGAATCTCCTCCGCGGTCCAGACAAGAACCTCCGCGCGGAGA
AAAAAGGCGTCTTCGTCCCCGTCGCCCTCCCGCACCGCCTCGATGTCGTC
GAGCTCGAGCGACTTCTCCGAAGGCGGTGACCACGAAGAAGACGCCTCCT
TTTCGGACGACTCCTCCGAACACATGGAGGAGGTGGAGCAGCAGCAGCAG
CAAAAGCAGAAGCAGAAGCTGCACGCGCACAAGAAGAGCAAAATCTCCAG
AGCGGAAACCACGGCCGCTGTCACTGGCCGGCGGGGTTCGTCGCCTCCTC
CGCCAGTGTCGGTGTCGGTCTCCAGCAGCGGCAGCAGAGGTGGCGAGCAA
CAACAGCCCCGCTCCCCGGCCACCACCTCGACTTCTCCCTTCGTTGCCAA
GCAGCCGGGGGCGAGGACTCGCGGAGGCGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGCTGCTGCCGCCAGAACAAAAGCGGAGCGCGAAGACGTA
AATCGGCAGCAGCAACAACAGCGGTTGACAATTATTTCTGCGCCTGCCCC
GTCGCCCGCGGCACCTTCTTCGTTTTTGGACGAGCCGGCTTCGTACCTGT
CCAAGAACAGGATCATCTCCGGCGGCAAGGCGGCGCCCCCTCGCCAGCAC
TCCCCGCTGACCGTCGGAGCGCCGCTTCCGCCGACGCTCCAGCTCCAGCT
CCAGCGGTCCAGCAGCCTTCCCACGTGGGCCCGGGAGACGCCTGCCGACG
CCGAGCAGCGGCGGCAGCAGGTCCACCGCTCGAGCGCCAGTGTCGGGGCC
GTACCGACATCGATGACCGGCCCCACCACCAGTGGCGAAGGTGAAGGTGA
AGCAATACATGAGATCACCATGCAGCCGTGGGAAAGCAATGTCCACCCGC
CGCGCTCGGTGACGCTCGTGAACATGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16:63169..64899-

>mRNA_L-elsbetiae_contig16.4137.1 ID=mRNA_L-elsbetiae_contig16.4137.1|Name=mRNA_L-elsbetiae_contig16.4137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2652bp|location=Sequence derived from alignment at L-elsbetiae_contig16:63169..64899- (Laminarionema elsbetiae ELsaHSoW15)
AATTTTTCCTGCCTGGAGCCACGGACCGTGAGTGCTCGCCAAGAGAAATC
AGTTCGAGACCAGGAACCTAGAAGTTTGATCGAGAGCACGCCCCGTCACC
ACATTGCGTGCGTAGTTTCTCCCGTGCGCTCTACACACCTCTCGATCGGA
TTTAGAGACCTGCCAGGAAACACCACAAAATTGCATCAACCCGAGAGAAC
ACACGAGGAAGGATGCCCTCTGCTGCTGGACGAGGCAACCCACGGCCGCT
ACTGGCCGGTGTCTTCCGCAAGGCTTGTGACTACTGCGTCAGAATTTTTC
CTGCCTGGAGCCACGGACCGTGAGTGCTCGCCAAGAGAAATCAGTTCGAG
ACCAGGAACCTAGAAGTTTGATCGAGAGCACGCCCCGTCACCACATTGCG
TGCGTAGTTTCTCCCGTGCGCTCTACACACCTCTCGATCGGATTTAGAGA
CCTGCCAGGAAACACCACAAAATTGCATCAACCCGAGAGAACACACGAGG
AAGGATGCCCTCTGCTGCTGGACGAGGCAACCCACGGCCGCTACTGGCCG
GTGTCTTCCGCAAGGCTTGTGACTACTGCGTCAGGAGCAAGCGCGGCTGC
AACGGTGGCACCCCGTGCGAGCAGTGCATCCGACGCGGCCAAGGCTGCAC
CTACTCACAGCGCCGCAAGTCCGGGCCGCGCGGCCGGCCTCTCCCTCTCC
GCCCACAGCAAGGAATCTCCTCCGCGGTCCAGACAAGAACCTCCGCGCGG
AGAAAAAAGGCGTCTTCGTCCCCGTCGCCCTCCCGCACCGCCTCGATGTC
GTCGAGCTCGAGCGACTTCTCCGAAGGCGGTGACCACGAAGAAGACGCCT
CCTTTTCGGACGACTCCTCCGAACACATGGAGGAGGTGGAGCAGCAGCAG
CAGCAAAAGCAGAAGCAGAAGCTGCACGCGCACAAGAAGAGCAAAATCTC
CAGAGCGGAAACCACGGCCGCTGTCACTGGCCGGCGGGGTTCGTCGCCTC
CTCCGCCAGTGTCGGTGTCGGTCTCCAGCAGCGGCAGCAGAGGTGGCGAG
CAACAACAGCCCCGCTCCCCGGCCACCACCTCGACTTCTCCCTTCGTTGC
CAAGCAGCCGGGGGCGAGGACTCGCGGAGGCGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGCGGAGCAAGCGCGGCTGCAACGGTGGCACCCCGTGCGA
GCAGTGCATCCGACGCGGCCAAGGCTGCACCTACTCACAGCGCCGCAAGT
CCGGGCCGCGCGGCCGGCCTCTCCCTCTCCGCCCACAGCAAGGAATCTCC
TCCGCGGTCCAGACAAGAACCTCCGCGCGGAGAAAAAAGGCGTCTTCGTC
CCCGTCGCCCTCCCGCACCGCCTCGATGTCGTCGAGCTCGAGCGACTTCT
CCGAAGGCGGTGACCACGAAGAAGACGCCTCCTTTTCGGACGACTCCTCC
GAACACATGGAGGAGGTGGAGCAGCAGCAGCAGCAAAAGCAGAAGCAGAA
GCTGCACGCGCACAAGAAGAGCAAAATCTCCAGAGCGGAAACCACGGCCG
CTGTCACTGGCCGGCGGGGTTCGTCGCCTCCTCCGCCAGTGTCGGTGTCG
GTCTCCAGCAGCGGCAGCAGAGGTGGCGAGCAACAACAGCCCCGCTCCCC
GGCCACCACCTCGACTTCTCCCTTCGTTGCCAAGCAGCCGGGGGCGAGGA
CTCGCGGAGGCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAACAAA
AGCGGAGCGCGAAGACGTAAATCGGCAGCAGCAACAACAGCGGTTGACAA
TTATTTCTGCGCCTGCCCCGTCGCCCGCGGCACCTTCTTCGTTTTTGGAC
GAGCCGGCTTCGTACCTGTCCAAGAACAGGATCATCTCCGGCGGCAAGGC
GGCGCCCCCTCGCCAGCACTCCCCGCTGACCGTCGGAGCGCCGCTTCCGC
CGACGCTCCAGCTCCAGCTCCAGCGGTCCAGCAGCCTTCCCACGTGGGCC
CGGGAGACGCCTGCCGACGCCGAGCAGCGGCGGCAGCAGGTCCACCGCTC
GAGCGCCAGTGTCGGGGCCGTACCGACATCGATGACCGGCCCCACCACCA
GTGGCGAAGGTGAAGGTGAAGCAATACATGAGATCACCATGCAGCCGTGG
GAAAGCAATGTCCACCCGCCGCGCTCGGTGACGCTCGTGAACATGGCGAA
CAAAAGCGGAGCGCGAAGACGTAAATCGGCAGCAGCAACAACAGCGGTTG
ACAATTATTTCTGCGCCTGCCCCGTCGCCCGCGGCACCTTCTTCGTTTTT
GGACGAGCCGGCTTCGTACCTGTCCAAGAACAGGATCATCTCCGGCGGCA
AGGCGGCGCCCCCTCGCCAGCACTCCCCGCTGACCGTCGGAGCGCCGCTT
CCGCCGACGCTCCAGCTCCAGCTCCAGCGGTCCAGCAGCCTTCCCACGTG
GGCCCGGGAGACGCCTGCCGACGCCGAGCAGCGGCGGCAGCAGGTCCACC
GCTCGAGCGCCAGTGTCGGGGCCGTACCGACATCGATGACCGGCCCCACC
ACCAGTGGCGAAGGTGAAGGTGAAGCAATACATGAGATCACCATGCAGCC
GTGGGAAAGCAATGTCCACCCGCCGCGCTCGGTGACGCTCGTGAACATGG
CG
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