mRNA_L-elsbetiae_contig1597.4114.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1597.4114.1 vs. uniprot
Match: D7G1J8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J8_ECTSI) HSP 1 Score: 521 bits (1342), Expect = 3.900e-175 Identity = 295/393 (75.06%), Postives = 331/393 (84.22%), Query Frame = 3 Query: 507 GDKSRSLAALGLSQSRGGGTFSGSYERLPSWVDEEAGAXXXXXXXXXXXXXXGSTFVPRSISVNSDXXXXXXXXXXAGMRSLSVNSDATPGTDLGAAALPAIKR-VPKANVRGAGAAGAGRGAGYAGHNWFLSTEDRRILKRRTILARFTPIVLLSSFVGDLDLITDWTFLHYGLAGQGYVIQRLALFFAIVGTVMWALSVTEFSLMSRLKNMWRGNLLSRLQHVGLGWQLLANVFLEDLPQFIITIITRPTSVTGVLNLCASGLSLCAKIVHGVSSQRAPSLSTQFKMIDQDPAVTRNLFRLRDEAKKEAKAAEKLVYLAWTNRCSTGEKKAAAVFQVLQMDPTFVNGDLEYMRADLFTGSRLYITSCALTGSIPRQLGDLSLLRTVVLARN 1682 GDKSR+LA LGLS S+GGGTFSGSY+RLPSW + XXXXXXXXXXX VPRS+S+NSD XX + + + T+LG PAIKR P RG GA+G GRG+G GH+WFLS +DR++LKRRTIL+R TPIVLLSSFVGDLDLITDWTFL YGLAGQG++I++LALFFAIVGTVMWALS TEFSLMS+LKNMW+GN LSRLQHVGLGWQLLANVFLED+PQFIIT+ITRPTSVTGVLNLCASGLSLCAKIVHG SSQRAPSLSTQFKMIDQDPAVTRNLF+LRDEAKK+AKAAEKLVYLAW NRCSTGE+KAAAVFQVLQMDPTFV GDLEYMRADLF+GSRLYIT+ +LTG IP Q+GD+++LR VVL+ N Sbjct: 27 GDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXXXXXXDGGD---VPRSLSINSDGGGFGAGTXXXXXXXXAAATARS--TELG----PAIKRRAPGKTSRGLGASG-GRGSG--GHSWFLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITASSLTGPIPSQVGDMTILRAVVLSGN 407
BLAST of mRNA_L-elsbetiae_contig1597.4114.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE) HSP 1 Score: 436 bits (1122), Expect = 1.100e-145 Identity = 269/403 (66.75%), Postives = 303/403 (75.19%), Query Frame = 3 Query: 252 MMYLLFLGLLYKLQGGRFRSFVRAVMGYDVEADMTPTSPTTSGQGATTIKKPKVVAGYVSDGAASDCSAPGDFGIASATXXXXXVGDKSRSLAALGLSQSRGGGTFSGSYERLPSWVDEEAGAXXXXXXXXXXXXXXGSTFVPRSISVNSDXXXXXXXXXXAGMRSLSVNSD---ATPGTDLGAAALPAIKR-VPKANVRGAGAAGAGRGAGYAGHNWFLSTEDRRILKRRTILARFTPIVLLSSFVGDLDLITDWTFLHYGLAGQG-----------YVIQRLALFFAIVGTVMWALSVTEFSLMSRLKNMWRGNLLSRLQHVGLGWQLLANVFLEDLPQFIITIITRPTSVTGVLNLCASGLSLCAKIVHGVSSQRAPSLSTQFKMIDQDPAVTRNLFRLR 1415 MMYL+FL LYKLQGGRFRSFVRAV+G+DVEADMTPTS S + + VAGY+SDGAASD SAPG+ A+ +GDKSR+LA LGLS S+GGGTFSGSY+RLPSW G XXXXXXXXXXXXX VPRS+S+NSD AG R T+LG PAIKR P RG GA+GA RG+G GH+W+LS +DR++LKRRTIL+R TPIVLLSSFVGDLDLITDW FL YGLAGQG ++I++LALFFAIVGTVMWALS TEFSLMS+LKNMW+ LQHVGLGWQLLANVFLED+PQFIIT+ITRPTSVTGVLNLCASGLSLCAKI+HG+SSQRAPSLSTQFKMIDQDPAVTRNLF+LR Sbjct: 1 MMYLVFLAFLYKLQGGRFRSFVRAVLGHDVEADMTPTSHNASDEKGVSKPVKPAVAGYISDGAASDVSAPGEPAAAA-------LGDKSRALAGLGLSASKGGGTFSGSYQRLPSW-----GGDXXXXXXXXXXXXXDGGDVPRSLSINSDGGGFE-----AGTRXXXXXXXXXATARSTELG----PAIKRRAPGKTSRGLGASGA-RGSG--GHSWYLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWMFLKYGLAGQGENTKAEGCLQRFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKV-----LQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR 374
BLAST of mRNA_L-elsbetiae_contig1597.4114.1 vs. uniprot
Match: D7FK13_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI) HSP 1 Score: 178 bits (452), Expect = 3.970e-45 Identity = 111/261 (42.53%), Postives = 152/261 (58.24%), Query Frame = 3 Query: 900 STED-RRILKRRTILARFTPIVLLSSFVGDLDLITDWTFLHYGLAGQGYVIQRLALFFAIVGTVMWALSVTEFSLMSRLKNMW--RGNLLSRLQHVGLGWQLLANVFLEDLPQFIITIITRPTSVTGVLNLCASGLSLCAKIVHGVSSQRAPSLSTQFKMIDQDPAVTRNLFRLRDEAKKEAKAAEKLVYLA----WTNRCSTGEKKA----AAVFQVLQMDPTFVNGDLEYMRADLFTGSRLYITSCALTGSIPRQLGDL 1649 ++ED RR LKR I + TP+ +L+S V DLDL DW FL GL ++ +A +VGTVM+ L EF +S W RG LS LQHV LGWQLL NV +ED+PQ +IT +T PTSV GVLN+ +G +L AK+ G +++ +S+Q +MID DP V ++L R +A++ A A L L N E+ + A FQV+Q+DP F+NG+L Y+R L SRL + L GS+P LGD+ Sbjct: 117 NSEDLRRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWT-WCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPTERNSKRLLATAFQVMQVDPGFLNGELGYIREKLEV-SRLNLGRFGLKGSLPPSLGDV 375
BLAST of mRNA_L-elsbetiae_contig1597.4114.1 vs. uniprot
Match: A0A6H5JP38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP38_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.180e-20 Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 3 Query: 1452 LVYLAWTNRCSTGEKKAAAVFQVLQMDPTFVNGDLEYMRADLFTGSRLYITSCALT 1619 +V L T RCSTGE+KAAAVFQVLQMDPTFV GDLEYMRADLF+GSRLYITSC+LT Sbjct: 1 MVPLHDTGRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITSCSLT 56 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1597.4114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1597.4114.1 >prot_L-elsbetiae_contig1597.4114.1 ID=prot_L-elsbetiae_contig1597.4114.1|Name=mRNA_L-elsbetiae_contig1597.4114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=562bp MMYLLFLGLLYKLQGGRFRSFVRAVMGYDVEADMTPTSPTTSGQGATTIKback to top mRNA from alignment at L-elsbetiae_contig1597:204..14204- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1597.4114.1 ID=mRNA_L-elsbetiae_contig1597.4114.1|Name=mRNA_L-elsbetiae_contig1597.4114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=14001bp|location=Sequence derived from alignment at L-elsbetiae_contig1597:204..14204- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1597:204..14204- >mRNA_L-elsbetiae_contig1597.4114.1 ID=mRNA_L-elsbetiae_contig1597.4114.1|Name=mRNA_L-elsbetiae_contig1597.4114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3372bp|location=Sequence derived from alignment at L-elsbetiae_contig1597:204..14204- (Laminarionema elsbetiae ELsaHSoW15)back to top |