mRNA_L-elsbetiae_contig15944.4101.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15944.4101.1
Unique NamemRNA_L-elsbetiae_contig15944.4101.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15944.4101.1 vs. uniprot
Match: A0A6H5JUH3_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH3_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.460e-37
Identity = 85/116 (73.28%), Postives = 93/116 (80.17%), Query Frame = 1 
Query:    1 GFTEWGALLLRKEVRTLQQGLAALMETDSLNTEFDELNELVRLLNSERPSDALDFRPP-TPRRCGDAGSXXXXXXXXXXXCSSGSGGREALSSERIKEVLRLRADFQREAIDALEL 345
            GFTEWGALLLRKEVRTLQQGLAALMETDSL+TEF +LNELVRLLN ERP+DALD+RPP  PRR GD GS              G GG  ++SSER+KEVLRLRA+FQREAIDALEL
Sbjct:  743 GFTEWGALLLRKEVRTLQQGLAALMETDSLSTEFGDLNELVRLLNFERPADALDYRPPPAPRRPGDNGSAGVNGGGGGRI---GDGGNASVSSERVKEVLRLRAEFQREAIDALEL 855
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BLAST of mRNA_L-elsbetiae_contig15944.4101.1 vs. uniprot
Match: D8LT95_ECTSI (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT95_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 7.700e-36
Identity = 83/115 (72.17%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:    4 FTEWGALLLRKEVRTLQQGLAALMETDSLNTEFDELNELVRLLNSERPSDALDFRPP-TPRRCGDAGSXXXXXXXXXXXCSSGSGGREALSSERIKEVLRLRADFQREAIDALEL 345
            FTEWGALLLRKEVRTLQQGLAALMETDSLN EF +LNELVRLLN ERP+DALD+RPP  PRR  D GS              G G   ++SSER+KEVLRLRADFQREAIDALEL
Sbjct:  373 FTEWGALLLRKEVRTLQQGLAALMETDSLNMEFGDLNELVRLLNFERPADALDYRPPPAPRRPRDDGSAGVNGGGGGRI---GDGENASVSSERVKEVLRLRADFQREAIDALEL 484
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BLAST of mRNA_L-elsbetiae_contig15944.4101.1 vs. uniprot
Match: A0A836CHF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.920e-6
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 TEWGALLLRKEVRTLQQGLAALMETDSLNTEFDELNELVRLLNSERPSDA 156
            TEWGALLL++EVR LQQ L AL+E  +L  +F  L ++V+LL  ERP+DA
Sbjct:  625 TEWGALLLQREVRVLQQRLGALVEGGTLTAQFSRLQQVVQLLTLERPADA 674
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15944.4101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JUH3_9PHAE2.460e-3773.28Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
D8LT95_ECTSI7.700e-3672.17Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A836CHF9_9STRA2.920e-658.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15944contigL-elsbetiae_contig15944:1369..3190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue8.6e-20
Seed eggNOG ortholog2880.D8LT95
Hectar predicted targeting categoryother localisation
EggNOG OGs2BXNC@1,2SDKR@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1018
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15944.4101.1prot_L-elsbetiae_contig15944.4101.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15944 2039..3118 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.9738753-UTR-L-elsbetiae_contig15944:1368..20381622815655.9738753-UTR-L-elsbetiae_contig15944:1368..2038Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15944 1369..2038 -
1691683018.2264423-UTR-L-elsbetiae_contig15944:1368..20381691683018.2264423-UTR-L-elsbetiae_contig15944:1368..2038Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15944 1369..2038 -
1622815656.0125499-UTR-L-elsbetiae_contig15944:3118..31901622815656.0125499-UTR-L-elsbetiae_contig15944:3118..3190Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15944 3119..3190 -
1691683018.2713199-UTR-L-elsbetiae_contig15944:3118..31901691683018.2713199-UTR-L-elsbetiae_contig15944:3118..3190Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15944 3119..3190 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.9880579-CDS-L-elsbetiae_contig15944:2038..22661622815655.9880579-CDS-L-elsbetiae_contig15944:2038..2266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15944 2039..2266 -
1691683018.2409606-CDS-L-elsbetiae_contig15944:2038..22661691683018.2409606-CDS-L-elsbetiae_contig15944:2038..2266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15944 2039..2266 -
1622815656.0007365-CDS-L-elsbetiae_contig15944:3070..31181622815656.0007365-CDS-L-elsbetiae_contig15944:3070..3118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15944 3071..3118 -
1691683018.2533226-CDS-L-elsbetiae_contig15944:3070..31181691683018.2533226-CDS-L-elsbetiae_contig15944:3070..3118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15944 3071..3118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15944.4101.1

>prot_L-elsbetiae_contig15944.4101.1 ID=prot_L-elsbetiae_contig15944.4101.1|Name=mRNA_L-elsbetiae_contig15944.4101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
METDSLNTEFDELNELVRLLNSERPSDALDFRPPTPRRCGDAGSAGGLGG
GGGGGCSSGSGGREALSSERIKEVLRLRADFQREAIDALEL*
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mRNA from alignment at L-elsbetiae_contig15944:1369..3190-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15944.4101.1 ID=mRNA_L-elsbetiae_contig15944.4101.1|Name=mRNA_L-elsbetiae_contig15944.4101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1822bp|location=Sequence derived from alignment at L-elsbetiae_contig15944:1369..3190- (Laminarionema elsbetiae ELsaHSoW15)
GGCTTCACCGAGTGGGGGGCGCTTTTGTTGAGAAAAGAGGTGCGAACGCT
GCAGCAAGGGCTGGCGGCACTGATGGAGACGGACTCTCTCAACACCGAGT
TCGACGAGCTGAACGAGCTGGTGAGCGCGGGCGCTTTGAGAAGGGGGGCG
AACACGGGGCTGGAAATGCAGCTGGCTCCCCACTGCTGTACCCTTTTGGG
TTCTGGCCCAGCTTATGTTTTCAACTCCCGTGGAACGTCCGTTTTGTCTG
TATTACATGTACCTCCCAAGCGTAGCGGCATCGGTGGGGACCGATACACA
TATATATATACATATGTATCGTTTTGCTGGTACACACAGTAAGTAAACCC
GAACAAGGTTCGACATACCTCGCTGCGTATGTTGAGTTCCCATGAACCTT
CTGCTTTGTCACGAAAAAAACGAGCGAGGATACTCCTGCCCCCGAAAGCG
TTCTTGTATCGCAAGTTTTGACACGCGCTCAACCATGCTATCTTTGTGAA
GCTGACTGACACCCGTAAGCAGTGGGTGACACCGCTCTCTTTCCCTCTCT
TTTGTGGTCGTCCCAGCATTGTTTGCGACGAAGCGGCGGGAGGAGTCGGC
ACGCCGTTTGCCAGCCTCGTTTTGCGTCCGCCCTGCACGTTCTCCCCCCC
CCCCCCTCACGTCCGTACATGGAGCTAGCTACCTGTAGCTCCTGGCGAAC
CCCAGCCCCCTTTACAGCTTCATCGTTCTATGCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCC
CCCCCCCCCCCCGGGCGCTCCCACCGCCGGCCTACACCAACTCTCATTTC
GCCAAACCATCATGACATGGCACCCTTTTCCTAAAACCTTCCTCTCGTTC
AAATGCCGAAAACCGGCGTTGCAGGTGCGCCTGCTGAACTCCGAGCGACC
TTCCGACGCGCTCGACTTTCGACCGCCAACCCCGAGACGTTGCGGAGATG
CCGGCAGCGCCGGAGGACTCGGCGGTGGCGGCGGCGGCGGTTGCAGTAGC
GGCAGTGGTGGTAGGGAGGCTTTATCCTCCGAGAGGATAAAGGAGGTGCT
TCGTCTGAGAGCTGACTTCCAGAGGGAGGCCATCGACGCACTGGAGTTGT
GACCCCGACGCGTGCGTAAGGGTATATTTACATATTGGGCTGTCGATCGC
GAGGAAGTCATTTTGTTGTTGCGGGCTTTAGGTCTCTAGCTGTGTGCGTG
CTGAGGCGCGCTCTGGGTGGGGTGGGGTGCGTGTCCGCTGCCCGTTGATT
GCGGAGAGCTTGGCCTCGGCAGGCGTGTGTGTGTGTGTGCAAGGGTATGC
TTCCCGTGCAGCAGGAGAACGAGCATCGGGGCCCTAGGCAGAAAGCAGAA
TCGAGCGCGACATCGTTGTTGTTGTTGCTGTTGCTGTTGCTGTTGCTGTT
GTCTCACCTATTCTGGTGAGGCCAAACGACAACAAGTGCTTTGTCGCAGC
TGGTCCTGCAAAGAGAAGCCTTCGCTGGCTGGTCTGGAAGTTGAACTTTT
CGAAACTCTGGCGGGCAAATCCATGCTACTCGTCCAGCAGACCTGGCAAG
AGGGGTTGAACACATAATACTTACAAAGAGGCGTCGATCGGTAGCGCTGC
CGTCAAGACACGACGAACTCAGCCATCTGCATTTGTCGAGGTGTTCCATT
CGCTGCCTGGGAAGCACGTTTAGCGTTAAATAGAATTCAGTGAATCAAAA
ATGGAACCTAGCGTTCTGCAGAAGTTCGAAGTAAGCGGCACAAACCTGCT
CGATCAAGAGGTCTGTGAACGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15944:1369..3190-

>mRNA_L-elsbetiae_contig15944.4101.1 ID=mRNA_L-elsbetiae_contig15944.4101.1|Name=mRNA_L-elsbetiae_contig15944.4101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig15944:1369..3190- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGACGGACTCTCTCAACACCGAGTTCGACGAGCTGAACGAGCTGAT
GGAGACGGACTCTCTCAACACCGAGTTCGACGAGCTGAACGAGCTGGTGC
GCCTGCTGAACTCCGAGCGACCTTCCGACGCGCTCGACTTTCGACCGCCA
ACCCCGAGACGTTGCGGAGATGCCGGCAGCGCCGGAGGACTCGGCGGTGG
CGGCGGCGGCGGTTGCAGTAGCGGCAGTGGTGGTAGGGAGGCTTTATCCT
CCGAGAGGATAAAGGAGGTGCTTCGTCTGAGAGCTGACTTCCAGAGGGAG
GCCATCGACGCACTGGAGTTGTGAGTGCGCCTGCTGAACTCCGAGCGACC
TTCCGACGCGCTCGACTTTCGACCGCCAACCCCGAGACGTTGCGGAGATG
CCGGCAGCGCCGGAGGACTCGGCGGTGGCGGCGGCGGCGGTTGCAGTAGC
GGCAGTGGTGGTAGGGAGGCTTTATCCTCCGAGAGGATAAAGGAGGTGCT
TCGTCTGAGAGCTGACTTCCAGAGGGAGGCCATCGACGCACTGGAGTTGT
GA
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