mRNA_L-elsbetiae_contig1592.4089.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1592.4089.1
Unique NamemRNA_L-elsbetiae_contig1592.4089.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1592.4089.1 vs. uniprot
Match: D7FTS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS6_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.850e-22
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 3 
Query:   72 MSLNARLAEKEAEMNEVERKLKAVIEKIETSNKRLPRRPGVNGDQLRGEVRRIDTKLTTTSMKLVEEKALLRKKDIIKARLKDLVGFE 335
            M+L AR    E +++E+E+    + +KIE   KRLP+RPG+NGDQLR EVR IDTKLTTTSMKLV+EK LLR+KD IKARLKDL  +E
Sbjct:    1 MALEARCGAMELQVDELEKGWVLMNDKIEAVIKRLPKRPGINGDQLRAEVRSIDTKLTTTSMKLVDEKTLLRRKDNIKARLKDLAAYE 88
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BLAST of mRNA_L-elsbetiae_contig1592.4089.1 vs. uniprot
Match: A0A6H5L0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D2_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.410e-22
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 3 
Query:   72 MSLNARLAEKEAEMNEVERKLKAVIEKIETSNKRLPRRPGVNGDQLRGEVRRIDTKLTTTSMKLVEEKALLRKKDIIKARLKDLVGFE 335
            M+L AR    E E++E+E+    + +KIE   KRLP+RPG+NGDQLR E+R ID KLTTTSMKLVEEK LLR+KD IKARLKDL  +E
Sbjct:    1 MALEARCGAMELEVDELEKSWVQMNDKIEAVIKRLPKRPGINGDQLRAEMRSIDIKLTTTSMKLVEEKTLLRRKDSIKARLKDLAAYE 88
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1592.4089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTS6_ECTSI3.850e-2262.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0D2_9PHAE4.410e-2262.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1592contigL-elsbetiae_contig1592:17240..18684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog2880.D7FTS6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.K homology RNA-binding domain
EggNOG OGs28HET@1,2QPSV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size340
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1592.4089.1prot_L-elsbetiae_contig1592.4089.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1592 17311..18684 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.9511247-UTR-L-elsbetiae_contig1592:17239..173101622815654.9511247-UTR-L-elsbetiae_contig1592:17239..17310Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1592 17240..17310 +
1691683017.6900818-UTR-L-elsbetiae_contig1592:17239..173101691683017.6900818-UTR-L-elsbetiae_contig1592:17239..17310Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1592 17240..17310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.963423-CDS-L-elsbetiae_contig1592:17310..174451622815654.963423-CDS-L-elsbetiae_contig1592:17310..17445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1592 17311..17445 +
1691683017.7046535-CDS-L-elsbetiae_contig1592:17310..174451691683017.7046535-CDS-L-elsbetiae_contig1592:17310..17445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1592 17311..17445 +
1622815654.9761872-CDS-L-elsbetiae_contig1592:18552..186841622815654.9761872-CDS-L-elsbetiae_contig1592:18552..18684Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1592 18553..18684 +
1691683017.7148185-CDS-L-elsbetiae_contig1592:18552..186841691683017.7148185-CDS-L-elsbetiae_contig1592:18552..18684Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1592 18553..18684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1592.4089.1

>prot_L-elsbetiae_contig1592.4089.1 ID=prot_L-elsbetiae_contig1592.4089.1|Name=mRNA_L-elsbetiae_contig1592.4089.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MSLNARLAEKEAEMNEVERKLKAVIEKIETSNKRLPRRPGVNGDQLRGEV
RRIDTKLTTTSMKLVEEKALLRKKDIIKARLKDLVGFET
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mRNA from alignment at L-elsbetiae_contig1592:17240..18684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1592.4089.1 ID=mRNA_L-elsbetiae_contig1592.4089.1|Name=mRNA_L-elsbetiae_contig1592.4089.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1445bp|location=Sequence derived from alignment at L-elsbetiae_contig1592:17240..18684+ (Laminarionema elsbetiae ELsaHSoW15)
AATATAGCTGGTGGACGGTTCCAAGGTAGTGAAAAAAGAACCTTGAATCT
TCTCGGGTGCTACTTTTAGCCATGTCGCTCAACGCCCGCCTCGCGGAGAA
GGAGGCTGAGATGAACGAGGTCGAACGGAAGCTGAAGGCAGTGATTGAGA
AGATCGAGACCTCCAACAAGCGTCTCCCTAGAAGACCAGGTGTCAACGGA
GACCAGGTGTGAGCGCAACAACCATCATGGTTTCCAAATGTGTGTGTGCG
CGATCTTTTATAAATTAATAACCGACACCCGGTAGATCTGGTCTCTTTCA
GCAAAAAAACATGTTGCGGCGCCTACTACATGTAGATGTGTACCAACAAT
AGCAAGGCCTCTACATACATACACCCCCCCACGATCGCAGGGTGACAAAA
TCCTCGGTGTGTTTTCTGCGTTTTAGGATGTGCTCTTGTCTCTATCGTTC
TTTGACGCGGTGGGTCGCAACAAGTGATTTTTTGTATGTGCCAAAGCGGC
CGCTCCCAGGCAGCAGGAAACCGCCGCTCCCTTCTCGAGAAGGCTTGTGT
GTAGGCATTACGACGGGGTCAGTAAGTCGGAGCGGGCGAGACGGCTGCTT
CCTCTTGGCCCAGGTGGCCGCTTGCATGTGTGCCGTGCGAGTACCCGACC
TCTCTCTCTTTCTCTCGCTCTTTGGCTCGCTCTCTCTGTTCGAGCCACTT
TCTTCGAGAGTTGGCGCTGCTGTGTTCTTTCTGATTCTTCCTGGGTACTG
GAACCCATTTCAAAAGCCTGCATGCTCGAGTCCGCGTTCGACGTTCATAA
TGTCGTCAGCGCTGTGGAAGACACCTGTAATAGGGGGGTGTTCTGAATTT
TGTTTGCACCTTGCTGGGAACCATGATATGTAGAGAGCCTCTCCGTAAAG
GGTATTCTGGCTGTGACAAAAGGCGACACATGCAGACCAACCCGCTTTCG
GTGCGCTCTATCGACCATCCTATGTACCAGTAGAGCATAGATAGCCCGGT
AGGCCACTGTTGCATCTCGACCACAGAACTTCACTGCTGTTGCAGCAGCG
TGCAATTTCCCAACACGGCCATAAGGTATATAAGCCACACGTAGTATGTA
CACATACTGCATGCGGTCGACTAGACTAAAAGTCCAAACCATTTGATTCG
ACCTTGGCCGGTCGAGAAACCTCTCTGTGCATCGATCGATTCAGCGTGCG
TTCATCCGGTGCTCTTGTTCCCGAGCGTTGGTCAACGAATGCCCTTCTTT
TGTCTTTGCCGCGCAATGCGTCGTTGCCCTCACCCTCGCCTCTACATACA
CACGTGCATGCAGCTGAGGGGGGAGGTGAGGCGGATCGACACCAAGCTGA
CGACCACGTCCATGAAGCTCGTCGAAGAGAAGGCCCTCCTCCGCAAGAAG
GACATCATCAAGGCCAGGCTCAAGGATCTCGTAGGCTTCGAGACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1592:17240..18684+

>mRNA_L-elsbetiae_contig1592.4089.1 ID=mRNA_L-elsbetiae_contig1592.4089.1|Name=mRNA_L-elsbetiae_contig1592.4089.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig1592:17240..18684+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCTCAACGCCCGCCTCGCGGAGAAGGAGGCTGAGATGAACGAGGT
CGAACGGAAGCTGAAGGCAGTGATTGAGAAGATCGAGACCTCCAACAAGC
GTCTCCCTAGAAGACCAGGTGTCAACGGAGACCAGATGTCGCTCAACGCC
CGCCTCGCGGAGAAGGAGGCTGAGATGAACGAGGTCGAACGGAAGCTGAA
GGCAGTGATTGAGAAGATCGAGACCTCCAACAAGCGTCTCCCTAGAAGAC
CAGGTGTCAACGGAGACCAGCTGAGGGGGGAGGTGAGGCGGATCGACACC
AAGCTGACGACCACGTCCATGAAGCTCGTCGAAGAGAAGGCCCTCCTCCG
CAAGAAGGACATCATCAAGGCCAGGCTCAAGGATCTCGTAGGCTTCGAGA
CACTGAGGGGGGAGGTGAGGCGGATCGACACCAAGCTGACGACCACGTCC
ATGAAGCTCGTCGAAGAGAAGGCCCTCCTCCGCAAGAAGGACATCATCAA
GGCCAGGCTCAAGGATCTCGTAGGCTTCGAGACA
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