mRNA_L-elsbetiae_contig1581.4046.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1581.4046.1
Unique NamemRNA_L-elsbetiae_contig1581.4046.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1581.4046.1 vs. uniprot
Match: A0A6H5KXQ5_9PHAE (Sulfatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXQ5_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 1.130e-65
Identity = 155/323 (47.99%), Postives = 185/323 (57.28%), Query Frame = 3 
Query:    3 AFNEHGFELHGNNVFQEGILVPFSLTGPPDDPRITPGTTLDRAGMHADIAPTILNLLGLWNDPAVPPELLPPPARSPQD-LLAGLERRQRERLSGNNA---RPAYEGGSSALHPRGPIGGGEEEKEEGHPGSTIGKRRPLGSLVVGSGLVGDSLLGPDYRGCAVSATHYGGKSLAVVAGDWKGLFVYGWEKERGGRWHAEVEEAQLFDLSADPRETRNLLKDAGRGSCCLLAGVSAAEAAGPSGASSSPAAREGGEMAYSCHEAAQYPADLLEGGVGREDDGRGAPASTGAKKKRALAAEVCCHLETAAVAFARDNLEFFGRQ 959
            AFNEHGF+ HGNNV+QEG++VPF LT PP D RI PG TL R GM ADIAPT+L+LLGLWN  A+ P  L     S +D   +G    Q   L G+N    R   E  +    PR     GE E E                  VGSGL+GDS+LGPD+R CAVS+TH+G K LAVV GDWKGLF Y  +K R  + H E+  AQLF LS DPRET NL + AG GSCC     ++          SSP A     M+ SC++AA+Y A ++  G G+ED                  AEVCC LETAAVAF +DNL FFGRQ
Sbjct:  625 AFNEHGFDKHGNNVYQEGVIVPFFLTAPPGDARIVPGQTLHRVGMQADIAPTLLDLLGLWNPQAMLPSRLQETNPSEEDEARSGDSFSQPHGLRGHNEVSNRKRGERSTPDARPR-----GERESE---------------FSAVGSGLIGDSILGPDFRRCAVSSTHFGKKVLAVVGGDWKGLFAYDLKK-RNDQTHVEILHAQLFALSLDPRETENLNEIAGSGSCCPTDDKASL---------SSPYAPREETMSASCNKAARYTAQVVLHGDGKED-----------------VAEVCCLLETAAVAFVKDNLSFFGRQ 900
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1581.4046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXQ5_9PHAE1.130e-6547.99Sulfatase domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1581contigL-elsbetiae_contig1581:19410..23968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.1
Seed ortholog evalue8.8e-44
Seed eggNOG ortholog2880.D7FIV3
KEGG koko:K12376
Hectar predicted targeting categoryother localisation
EggNOG free text desc.sulfuric ester hydrolase activity
EggNOG OGsCOG3119@1,KOG3731@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons3
Model size2298
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1581.4046.1prot_L-elsbetiae_contig1581.4046.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1581 20743..22688 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.6804662-UTR-L-elsbetiae_contig1581:19409..207421622815649.6804662-UTR-L-elsbetiae_contig1581:19409..20742Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1581 19410..20742 -
1691683014.1208265-UTR-L-elsbetiae_contig1581:19409..207421691683014.1208265-UTR-L-elsbetiae_contig1581:19409..20742Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1581 19410..20742 -
1622815649.7120821-UTR-L-elsbetiae_contig1581:22688..227721622815649.7120821-UTR-L-elsbetiae_contig1581:22688..22772Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1581 22689..22772 -
1691683014.1518013-UTR-L-elsbetiae_contig1581:22688..227721691683014.1518013-UTR-L-elsbetiae_contig1581:22688..22772Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1581 22689..22772 -
1622815649.7234247-UTR-L-elsbetiae_contig1581:23918..239681622815649.7234247-UTR-L-elsbetiae_contig1581:23918..23968Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1581 23919..23968 -
1691683014.1628714-UTR-L-elsbetiae_contig1581:23918..239681691683014.1628714-UTR-L-elsbetiae_contig1581:23918..23968Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1581 23919..23968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.6919878-CDS-L-elsbetiae_contig1581:20742..211171622815649.6919878-CDS-L-elsbetiae_contig1581:20742..21117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1581 20743..21117 -
1691683014.1342564-CDS-L-elsbetiae_contig1581:20742..211171691683014.1342564-CDS-L-elsbetiae_contig1581:20742..21117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1581 20743..21117 -
1622815649.701639-CDS-L-elsbetiae_contig1581:22232..226881622815649.701639-CDS-L-elsbetiae_contig1581:22232..22688Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1581 22233..22688 -
1691683014.1426985-CDS-L-elsbetiae_contig1581:22232..226881691683014.1426985-CDS-L-elsbetiae_contig1581:22232..22688Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1581 22233..22688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1581.4046.1

>prot_L-elsbetiae_contig1581.4046.1 ID=prot_L-elsbetiae_contig1581.4046.1|Name=mRNA_L-elsbetiae_contig1581.4046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=277bp
MHADIAPTILNLLGLWNDPAVPPELLPPPARSPQDLLAGLERRQRERLSG
NNARPAYEGGSSALHPRGPIGGGEEEKEEGHPGSTIGKRRPLGSLVVGSG
LVGDSLLGPDYRGCAVSATHYGGKSLAVVAGDWKGLFVYGWEKERGGRWH
AEVEEAQLFDLSADPRETRNLLKDAGRGSCCLLAGVSAAEAAGPSGASSS
PAAREGGEMAYSCHEAAQYPADLLEGGVGREDDGRGAPASTGAKKKRALA
AEVCCHLETAAVAFARDNLEFFGRQR*
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mRNA from alignment at L-elsbetiae_contig1581:19410..23968-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1581.4046.1 ID=mRNA_L-elsbetiae_contig1581.4046.1|Name=mRNA_L-elsbetiae_contig1581.4046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4559bp|location=Sequence derived from alignment at L-elsbetiae_contig1581:19410..23968- (Laminarionema elsbetiae ELsaHSoW15)
AGGCGTTTAACGAGCACGGCTTCGAACTACACGGGAACAACGTCTTCCAG
GTGAGCAGAGCAAGCAGCAGCCAGCAGCCAGCCACGAATGGGCTTGTACC
GAACTTCGCATCCCGTGGACTTAATATACACAGCAGCTTGAGAATGAGAA
TGATCCACCAAAGAGACTACCTACACAACAGCTATTTAGGTACAACTTTT
CGCACGAGGACCAACAGGAGCATCACCAAAGAAGAGAGCAGGCAGACCAA
GCGCGATTCTTGCACCCTGGTCCGTGCGTATGTACGTGGCCAATGGTCGA
ATTAAAAAAGCAGAGCAGAAGCTCTGCTGTAATTGTGAACCCCGTGCTTG
CCACCCTCCCAGCCCCCCCCACTGATTTTGCACCCCACATGGGGGGGGGG
GGGGGTTGCAGCACTACTGTCAGTTGCAGCGCAAATAACGCCCACGCTCA
GCACAGTGTGCGCATGCTTGGCGTCCTGAAAAAGGATGCTACTGCTCTGT
GGTGCTTTTCACGCTCGAAGCTGGCTTTGCTTCTTAAGGGGGGGGGTTGG
CAGACCTTAACCTTCACAAAGCGAGCGCCGAAAGCGGCGTGGCCCGGTCT
GCGAGAGCTTCCGGCGTGTGAGCGGTGCTTCCGATTCACGGGCCTCCTAT
TAGTATGTAACATGGTCTGTACATTTACTTAGGTATTTTACCCATGGAGA
GTTACCACTTGAAGGTTCGAAACCAAAGGTATTTCGCAGACGTCTCTCTT
ACGTCTTTAAATCCTCGCATTGCACGCCCTTTCCGCCCGGACGCAGCTCT
CATCCTTTGATGAACGCATGATGCGTGTGTCCAGTTCTATGTAAGCAGTC
GCACAAGGAGTCATCTACTACCCGAACAAGCCTATCTACCCCCCCCCCCC
CCCCCCCCCCCCGCCGGCGGTTTGCCCGCGTGTTTTTGTGGTGGGGGGCC
CCCCCCCCCCCCCCGGCTTTCTCCCCGCCCCCCGGGAAANNNNNNNNNNT
TTATGCCTTCCAACAAAGAGCCATCTACTCCCCAAAAACACCCCCCCCCC
CCCCCCCCCCCCCCCGCGGCGGCAGATGCTTTTGCGCCGTTTTTGTCAGT
GTAGGCGCCCGCCGCCGCCCCGTTGCTTTTCGCCCGTCGCCGATTGAAAC
ACGAAACCAGAAAATCCCCTTTTCCCTCGTCGTCCTCTCCTCGCAGGAGG
GGATCCTTGTCCCCTTCTCTCTCACGGGCCCCCCGGACGACCCTCGCATC
ACCCCCGGGACGACACTTGACCGAGCCGGGATGCACGCCGACATCGCCCC
GACCATCCTGAACCTGCTGGGACTGTGGAACGATCCCGCGGTGCCCCCAG
AGCTACTACCACCACCCGCCCGAAGCCCCCAGGACCTCCTGGCCGGGTTG
GAGCGGAGGCAGCGGGAGAGGCTGAGCGGGAACAACGCCCGACCGGCCTA
CGAGGGGGGCAGCTCGGCGTTGCATCCACGGGGCCCCATTGGAGGAGGTG
AAGAAGAAAAAGAAGAAGGACATCCCGGTAGCACTATTGGCAAGCGCCGT
CCCCTGGGGAGCCTCGTGGTGGGCTCGGGTCTCGTCGGGGACAGCCTTCT
CGGGCCCGACTACCGGGGCTGCGCCGTCAGCGCGACGCACTACGGCGGGA
AGAGCCTCGCCGTCGTGGCCGGCGACTGGAAGGGGCTGTTCGTGTACGGG
TGGGAGAAGGAGCGGGGCGGTCGGTGGCACGCTGAGGTGATTGGTGCAAA
TACCGTAATCATGCGGGTTATCGCACCCTCGTGTTAGCGTTTTTCTATAG
CATATTCCTACACAACGAGGAGGGTACCACTGCTGAAAAGGGTGGTTTTC
GAATCGTCTCGTCGGGGGGGTTCCAGAGAGGTATCAGATAGTGTTCGCAC
CCTCCTGGTGGTGGAGAAATACGCTGTAGAAAAACACCAACACGGGGGTG
CGATAACCCGCATGATTACGGTACATGTGTTTTGCTTTCTAGCTCTTTTG
AGCCCATGGATAGCTTTGTGAGCCTGGATGTTGTTGGCGCCACCCCCTTT
TTTTTTGTTCTCGGCCCCCTCTGACGCGAGGTGGACAGCTTCTGTCAACA
TGGCTTTGACTTTGTTCTAGAAAGGCATACTTGCAGATATAAGCTAATAT
GTACGTGCGATATGTGTGCTGCAAAGCCCCGCTTGACACTGATTTAGCTC
TGTTTCCTAGAAATGAATGAATGAATATGCACAATGTATATTCGTACGTG
CGGCGTGTATACTGCGGGCCCCCGTTGATACTTCTGATCGGCTCTAGACA
GCAGCCTGGCGCGGTCTGGGCACGAGCCTAAAATATCAATTATCGCAGGT
TCAATCGACCGACGCTTCCGTTCGATTTGGGCTATTCGAGCCGGCAGCGT
TTCGCACGGTGACAAGGGCAAAATTTGACTTAATTTGTTGCGATGTCGTC
GCCGGTCGCCGGGGCATCTTTGCGGAGGCGCCGTTCAAGACGAAACTGCA
TTCACACAGCAGTGGGGAGTTGCGTTGCTCGCGGTTGTGAGGCTGTGTTT
CTCGTGTGCGCGGGGGAGCTCGGTCAAAAAAAGCTTTCGAGCCGTCTATA
AGCGTGCATTATTGCTTCTTGGCGAAAGCACAAAATGGGCGAAAAAAAGA
AACAATCGCGTGCTGAGGTCGGGAGCGTTCGTTCTCCACGGGGTACTACA
TAGTGAGATATTATGTCGCAGTCAAACGACGCACTATTACTACAATACTG
CTGTGTGCGCGCCTTTTTTTTTTTTTTTTTTCAACACAAACCACCGCAAC
TTTTTATAATTTATTTTTTCCTCTCGCGAAAACAAATCACGGCCCACACA
GGTCGAGGAAGCGCAGCTATTCGATCTGTCTGCGGACCCGCGCGAGACCC
GCAACCTCTTGAAAGACGCGGGCAGGGGGAGCTGCTGCCTGCTGGCGGGG
GTGTCGGCGGCGGAGGCGGCGGGCCCCAGCGGGGCCTCCTCCTCGCCCGC
CGCCCGGGAAGGCGGCGAGATGGCCTATTCTTGCCACGAGGCGGCCCAGT
ACCCCGCGGACCTCCTGGAGGGGGGGGTAGGCCGGGAGGATGACGGCCGC
GGGGCCCCGGCGTCGACTGGGGCGAAGAAGAAGCGGGCTTTGGCCGCGGA
AGTGTGCTGCCACCTCGAGACCGCGGCGGTGGCGTTCGCGAGAGACAACC
TCGAGTTCTTCGGTCGGCAGCGATAAACAGGAAGAGCAGGAGCACGAGGG
CTCGGCAGCGATAGGAAGTACCGTAGGTGACACAAGATACCACACCCCCT
GGACCGAACTTTAGAGCTCCAATACTCCGTAACGAAGAAGGTGCCAGCAC
CAAGCAACACATGTTCGGACAGCCCTCGACTAGATCTTTCCAATGCCACC
TCTTTCGGCACTGGCACTCTTCTTGCTTGAGGAGGAATCGAGCTTTGAAA
ATCTGTCCAGGGGTTGTATCTTGTGTCACCTACGGTAGGAGCACACGAGG
GTGAGGACAACAGCAGTATCAACCAAGCAGCAAGCAGTCTACCGTCTCGG
AGTCGAGGGAGAGGGCCCTCACGTGGTCTTGTCTCCGTCGTTATTTAGAG
TAGAGAGGGCTGTGACCTGCTGTCTGGCGCTTGCTTGGTTGGTTGGCGCG
TGTGCCACCGTGTATTATTTTGAGAAAGAGAAACGGTTTTGATCAAAAGT
GGAACCTAGCCCACATCGAGACGGGACTCCGTGAGACTCAATCGGTATTC
CATATAGTGACGTGATATTCTCTATTTCCGGGATCCCTTTCCTCTTGCCC
GCACGTTGCTCGGAAAGGTGAGGGGGCTGTTTGCTGTGCTGTGCGGGGGA
AAAGCTTGTTTTTGGGCCGCGATCGGGAACAAGGCCTGGCCTTTGCTGCT
CGGCGGGGGTGCAGCAGGGGTGTTGTCAAGAGTGGACGGAAAATAGTTTT
TTTTACAGATATTTACTCGAGCCGAGATGTCCGATTCCGTTTAGATTGCT
TGACTCATGTCGACTGGTTGTTTGTGTAAATAGGTACCACGCGTACAATC
AATCGTGTGTAAATTGTTGGTTGGGGGACTCAAAAATCGGGGTGGGTGTG
CTTTGCACGGCCCCGTCACCCGCCGGCTGCACGGAACTCTTGTTTCTGTC
GTCAATAGAGCCGCATCGTGCATGCGCAACAACAGAGGTGATGCGCTTGG
GATCATCAGGTATGTGTGTGGCCCATGTTTCTCCGTTGGCATTTCGGAAA
GTTTTGGTGTATGTGTATTGTGTGTATCTTGTATCTACATTTGTGGCATT
GGTTGACTGTATCTTGCGGAACAGCAGGTGCGTTCAGCAGATCGGGGCGC
GCTCTTTTCATATATTATCGACACCACGCGTAGCCCACTAGACTTCTGTT
GTTGTACTTGTGCATCGAGAAGCGCGGCCGTACTGCGCCGCGGCCACTAT
ACGCTCACACGCTTCTCGTGGTATTCCTGCCTGTTGCATCAAACACTAGT
ATTTGAATACGATGTATAGATGTGGGCTTGTGTTTATTTAATTTGGGAGG
GAGCATTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1581:19410..23968-

>mRNA_L-elsbetiae_contig1581.4046.1 ID=mRNA_L-elsbetiae_contig1581.4046.1|Name=mRNA_L-elsbetiae_contig1581.4046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1662bp|location=Sequence derived from alignment at L-elsbetiae_contig1581:19410..23968- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGCCGACATCGCCCCGACCATCCTGAACCTGCTGGGACTGTGGAA
CGATCCCGCGGTGCCCCCAGAGCTACTACCACCACCCGCCCGAAGCCCCC
AGGACCTCCTGGCCGGGTTGGAGCGGAGGCAGCGGGAGAGGCTGAGCGGG
AACAACGCCCGACCGGCCTACGAGGGGGGCAGCTCGGCGTTGCATCCACG
GGGCCCCATTGGAGGAGGTGAAGAAGAAAAAGAAGAAGGACATCCCGGTA
GCACTATTGGCAAGCGCCGTCCCCTGGGGAGCCTCGTGGTGGGCTCGGGT
CTCGTCGGGGACAGCCTTCTCGGGCCCGACTACCGGGGCTGCGCCGTCAG
CGCGACGCACTACGGCGGGAAGAGCCTCGCCGTCGTGGCCGGCGACTGGA
AGGGGCTGTTCGTGTACGGGTGGGAGAAGGAGCGGGGCGGTCGGTGGCAC
GCTGAGATGCACGCCGACATCGCCCCGACCATCCTGAACCTGCTGGGACT
GTGGAACGATCCCGCGGTGCCCCCAGAGCTACTACCACCACCCGCCCGAA
GCCCCCAGGACCTCCTGGCCGGGTTGGAGCGGAGGCAGCGGGAGAGGCTG
AGCGGGAACAACGCCCGACCGGCCTACGAGGGGGGCAGCTCGGCGTTGCA
TCCACGGGGCCCCATTGGAGGAGGTGAAGAAGAAAAAGAAGAAGGACATC
CCGGTAGCACTATTGGCAAGCGCCGTCCCCTGGGGAGCCTCGTGGTGGGC
TCGGGTCTCGTCGGGGACAGCCTTCTCGGGCCCGACTACCGGGGCTGCGC
CGTCAGCGCGACGCACTACGGCGGGAAGAGCCTCGCCGTCGTGGCCGGCG
ACTGGAAGGGGCTGTTCGTGTACGGGTGGGAGAAGGAGCGGGGCGGTCGG
TGGCACGCTGAGGTCGAGGAAGCGCAGCTATTCGATCTGTCTGCGGACCC
GCGCGAGACCCGCAACCTCTTGAAAGACGCGGGCAGGGGGAGCTGCTGCC
TGCTGGCGGGGGTGTCGGCGGCGGAGGCGGCGGGCCCCAGCGGGGCCTCC
TCCTCGCCCGCCGCCCGGGAAGGCGGCGAGATGGCCTATTCTTGCCACGA
GGCGGCCCAGTACCCCGCGGACCTCCTGGAGGGGGGGGTAGGCCGGGAGG
ATGACGGCCGCGGGGCCCCGGCGTCGACTGGGGCGAAGAAGAAGCGGGCT
TTGGCCGCGGAAGTGTGCTGCCACCTCGAGACCGCGGCGGTGGCGTTCGC
GAGAGACAACCTCGAGTTCTTCGGTCGGCAGCGATAAGTCGAGGAAGCGC
AGCTATTCGATCTGTCTGCGGACCCGCGCGAGACCCGCAACCTCTTGAAA
GACGCGGGCAGGGGGAGCTGCTGCCTGCTGGCGGGGGTGTCGGCGGCGGA
GGCGGCGGGCCCCAGCGGGGCCTCCTCCTCGCCCGCCGCCCGGGAAGGCG
GCGAGATGGCCTATTCTTGCCACGAGGCGGCCCAGTACCCCGCGGACCTC
CTGGAGGGGGGGGTAGGCCGGGAGGATGACGGCCGCGGGGCCCCGGCGTC
GACTGGGGCGAAGAAGAAGCGGGCTTTGGCCGCGGAAGTGTGCTGCCACC
TCGAGACCGCGGCGGTGGCGTTCGCGAGAGACAACCTCGAGTTCTTCGGT
CGGCAGCGATAA
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