mRNA_L-elsbetiae_contig15747.4013.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15747.4013.1
Unique NamemRNA_L-elsbetiae_contig15747.4013.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15747.4013.1 vs. uniprot
Match: A0A6H5L0S5_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.430e-9
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 1 
Query:   85 GDSSLLRKFVGGNKPPVSPRDPNKRTGWLRVVERSLFDEGLGYTVEEDARTGPVRVIS-DSRDDLLQLHPQTIVLDHMRAYNYISNSVTGTDLDERL 372
            G S L+    G   PP  P +P K   W R +   L  EGL  T++    TG V +I    R+ L ++H   +V  H+RA+ Y+  S +G+D++E L
Sbjct:   82 GGSQLMSGRFGTRNPPKHPNEPGKFMSWSRRMRTFLAVEGLEQTLDHQPPTGYVHIIGCPDRNYLNRIHGAPLVTAHLRAWGYLVESTSGSDIEETL 178
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BLAST of mRNA_L-elsbetiae_contig15747.4013.1 vs. uniprot
Match: A0A6H5L089_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L089_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 5.690e-9
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 1 
Query:   85 GDSSLLRKFVGGNKPPVSPRDPNKRTGWLRVVERSLFDEGLGYTVEEDARTGPVRVIS-DSRDDLLQLHPQTIVLDHMRAYNYISNSVTGTDLDERL 372
            G S L+    G   PP  P +P K   W R +   L  EGL  T++    TG V +I    R+ L ++H   +V  H+RA+ Y+  S +G+D++E L
Sbjct:  368 GGSQLMSGRFGTRNPPKHPNEPGKFMSWSRRMRTFLAVEGLEQTLDHQPPTGYVHIIGCPDRNYLNRIHGAPLVTAHLRAWGYLVESTSGSDIEETL 464
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15747.4013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0S5_9PHAE1.430e-934.02Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5L089_9PHAE5.690e-934.02Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15747contigL-elsbetiae_contig15747:37..409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.836873-CDS-L-elsbetiae_contig15747:36..4081622815646.836873-CDS-L-elsbetiae_contig15747:36..408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15747 37..408 +
1691683012.27214-CDS-L-elsbetiae_contig15747:36..4081691683012.27214-CDS-L-elsbetiae_contig15747:36..408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15747 37..408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15747.4013.1prot_L-elsbetiae_contig15747.4013.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15747 37..408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15747.4013.1

>prot_L-elsbetiae_contig15747.4013.1 ID=prot_L-elsbetiae_contig15747.4013.1|Name=mRNA_L-elsbetiae_contig15747.4013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
GASTAGGAVPAVGGAGMAGGMTNGGLGVGDSSLLRKFVGGNKPPVSPRDP
NKRTGWLRVVERSLFDEGLGYTVEEDARTGPVRVISDSRDDLLQLHPQTI
VLDHMRAYNYISNSVTGTDLDERL
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mRNA from alignment at L-elsbetiae_contig15747:37..409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15747.4013.1 ID=mRNA_L-elsbetiae_contig15747.4013.1|Name=mRNA_L-elsbetiae_contig15747.4013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=373bp|location=Sequence derived from alignment at L-elsbetiae_contig15747:37..409+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCATCTACTGCTGGAGGGGCAGTTCCGGCGGTCGGAGGTGCAGGTAT
GGCAGGAGGAATGACAAATGGTGGTTTAGGTGTGGGTGATTCATCTCTCC
TTCGAAAGTTCGTCGGTGGAAACAAGCCGCCAGTATCCCCCCGCGATCCG
AATAAGCGCACAGGTTGGTTGCGTGTGGTGGAACGCAGCCTTTTCGACGA
GGGCCTCGGGTACACCGTAGAGGAGGATGCTAGAACTGGGCCTGTGCGTG
TAATCAGCGATAGCCGCGACGACCTGCTCCAGCTACACCCACAGACCATT
GTGCTCGATCACATGCGAGCATACAACTACATCTCTAATTCGGTCACCGG
AACGGATCTTGATGAGAGGCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15747:37..409+

>mRNA_L-elsbetiae_contig15747.4013.1 ID=mRNA_L-elsbetiae_contig15747.4013.1|Name=mRNA_L-elsbetiae_contig15747.4013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig15747:37..409+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCATCTACTGCTGGAGGGGCAGTTCCGGCGGTCGGAGGTGCAGGTAT
GGCAGGAGGAATGACAAATGGTGGTTTAGGTGTGGGTGATTCATCTCTCC
TTCGAAAGTTCGTCGGTGGAAACAAGCCGCCAGTATCCCCCCGCGATCCG
AATAAGCGCACAGGTTGGTTGCGTGTGGTGGAACGCAGCCTTTTCGACGA
GGGCCTCGGGTACACCGTAGAGGAGGATGCTAGAACTGGGCCTGTGCGTG
TAATCAGCGATAGCCGCGACGACCTGCTCCAGCTACACCCACAGACCATT
GTGCTCGATCACATGCGAGCATACAACTACATCTCTAATTCGGTCACCGG
AACGGATCTTGATGAGAGGCTGGGGGCATCTACTGCTGGAGGGGCAGTTC
CGGCGGTCGGAGGTGCAGGTATGGCAGGAGGAATGACAAATGGTGGTTTA
GGTGTGGGTGATTCATCTCTCCTTCGAAAGTTCGTCGGTGGAAACAAGCC
GCCAGTATCCCCCCGCGATCCGAATAAGCGCACAGGTTGGTTGCGTGTGG
TGGAACGCAGCCTTTTCGACGAGGGCCTCGGGTACACCGTAGAGGAGGAT
GCTAGAACTGGGCCTGTGCGTGTAATCAGCGATAGCCGCGACGACCTGCT
CCAGCTACACCCACAGACCATTGTGCTCGATCACATGCGAGCATACAACT
ACATCTCTAATTCGGTCACCGGAACGGATCTTGATGAGAGGCTG
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