mRNA_L-elsbetiae_contig15726.4000.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15726.4000.1
Unique NamemRNA_L-elsbetiae_contig15726.4000.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15726.4000.1 vs. uniprot
Match: D7FRH8_ECTSI (Signal peptide peptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH8_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 6.500e-8
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 EFKNAASNLENKTYSKHERQAMTSLMTSILDDVADAIVASR 123
            E+K+AA +L  K YS HER+AMTSL+TS+LDDVAD + ASR
Sbjct:  139 EYKSAAESLVRKAYSPHEREAMTSLLTSMLDDVADGVAASR 179
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15726.4000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRH8_ECTSI6.500e-865.85Signal peptide peptidase n=2 Tax=Ectocarpus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15726contigL-elsbetiae_contig15726:596..721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.0593987-CDS-L-elsbetiae_contig15726:595..7211622815646.0593987-CDS-L-elsbetiae_contig15726:595..721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15726 596..721 -
1691683011.8218064-CDS-L-elsbetiae_contig15726:595..7211691683011.8218064-CDS-L-elsbetiae_contig15726:595..721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15726 596..721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15726.4000.1prot_L-elsbetiae_contig15726.4000.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15726 596..721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15726.4000.1

>prot_L-elsbetiae_contig15726.4000.1 ID=prot_L-elsbetiae_contig15726.4000.1|Name=mRNA_L-elsbetiae_contig15726.4000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=42bp
EFKNAASNLENKTYSKHERQAMTSLMTSILDDVADAIVASR*
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mRNA from alignment at L-elsbetiae_contig15726:596..721-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15726.4000.1 ID=mRNA_L-elsbetiae_contig15726.4000.1|Name=mRNA_L-elsbetiae_contig15726.4000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=126bp|location=Sequence derived from alignment at L-elsbetiae_contig15726:596..721- (Laminarionema elsbetiae ELsaHSoW15)
GAGTTCAAGAACGCTGCTTCCAATCTGGAGAACAAGACGTACAGCAAGCA
CGAGCGGCAGGCGATGACTTCTCTCATGACCTCAATTCTGGACGACGTCG
CGGATGCCATCGTAGCTTCCCGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15726:596..721-

>mRNA_L-elsbetiae_contig15726.4000.1 ID=mRNA_L-elsbetiae_contig15726.4000.1|Name=mRNA_L-elsbetiae_contig15726.4000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=252bp|location=Sequence derived from alignment at L-elsbetiae_contig15726:596..721- (Laminarionema elsbetiae ELsaHSoW15)
GAGTTCAAGAACGCTGCTTCCAATCTGGAGAACAAGACGTACAGCAAGCA
CGAGCGGCAGGCGATGACTTCTCTCATGACCTCAATTCTGGACGACGTCG
CGGATGCCATCGTAGCTTCCCGGTGAGAGTTCAAGAACGCTGCTTCCAAT
CTGGAGAACAAGACGTACAGCAAGCACGAGCGGCAGGCGATGACTTCTCT
CATGACCTCAATTCTGGACGACGTCGCGGATGCCATCGTAGCTTCCCGGT
GA
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