prot_L-elsbetiae_contig1560.3928.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1560.3928.1
Unique Name	prot_L-elsbetiae_contig1560.3928.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	514

Homology

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BLAST of mRNA_L-elsbetiae_contig1560.3928.1 vs. uniprot
Match: D8LSZ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ4_ECTSI)

HSP 1 Score: 407 bits (1045), Expect = 2.000e-135
Identity = 251/478 (52.51%), Postives = 283/478 (59.21%), Query Frame = 0

Query:   34 RVRWRYSSVSLALLVVYAVCSLV-FLRPPSQYAVGPTTAPNNDKYNGNNGHDDHWGRQPRIRSASGADSIVFIALGPAARSTSLLYALTSLREEGRWDGAVHVIVEYEEDLDCLSSYLRQSVTAIAIAPPTSSGGRSGSGFEANNIGTTGPALGAMGKSTETVEGTGTARAEANAGDAAAVMESVSRVDAGGAIDTGNGDQLYLRDDGRSKPGGVVVNSAKMAKMQLLDLLPPSIERVVYVDCDVITQGPVGPFLDSVAQAWNELDREVEAAAAATVAADRGPATAERPTKSADRLPSRLQGESAAERSNSPAADSDDIGPAGDGSAKTSKPLSSPSSTVIIFEDAGGHTIPVCRGCDGAHSGVVALARGHSERCLELWHDAFQGDGGKVTGTATDQEALDVALRQGSGCEARWIGRRHLSFMKDAFVMAGLTRASTFGHFTGLLHPERLGTVYRRFYEWALGRGFEEWGQGEIEACA 510
            R R R  SV+LALL+ YAV S V FLRPP  + VGP+T P+    +GN        +QPR+RSASGADSIVF+ALGPAARS SLLYALTSLREEG WDG VHV+VE E+DL CLSSYLRQSVTAIAIAP                                                             GG++ +G GD             GVV N AKMAKM+LLDLLPPS+ERVVYVDCDV+TQ P+GPFLD+VA+ W+ELDR+  A                                                                   TV+IF DAGGHT+PVCRGCD AHSGVVALARGHSERCL+LWHDAF+GDG    GT+TDQEALD AL +GSGCEA  +GR HLSFMKDAFVMAGLTR STFGH+TGLLHP+ LG VYRRFYEWALG  FEEWGQGEI+ CA
Sbjct:    3 RARRRCWSVALALLLTYAVVSTVLFLRPPL-HPVGPSTKPSTT-ISGNQ----RTRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHVVVEREDDLACLSSYLRQSVTAIAIAPXX------------------------------------------------------XXXXXGGSLHSGGGDTR-----------GVVQN-AKMAKMKLLDLLPPSVERVVYVDCDVVTQRPLGPFLDAVAREWDELDRK--AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVMIFADAGGHTVPVCRGCDRAHSGVVALARGHSERCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGRWHLSFMKDAFVMAGLTRTSTFGHYTGLLHPKTLGKVYRRFYEWALGMSFEEWGQGEIQGCA 406

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1560.3928.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1560.3928.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LSZ4_ECTSI	2.000e-135	52.51	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 37..58
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 59..513
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..36
None	No IPR available	TMHMM	TMhelix		coord: 39..58

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1560	contig	L-elsbetiae_contig1560:16166..17707 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1560.3928.1	mRNA_L-elsbetiae_contig1560.3928.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1560 16041..18209 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1560.3928.1 ID=prot_L-elsbetiae_contig1560.3928.1|Name=mRNA_L-elsbetiae_contig1560.3928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=514bp
MYKQQFSHKYNCRTDRSSLRKLSCTPNKTSRQMRVRWRYSSVSLALLVVY
AVCSLVFLRPPSQYAVGPTTAPNNDKYNGNNGHDDHWGRQPRIRSASGAD
SIVFIALGPAARSTSLLYALTSLREEGRWDGAVHVIVEYEEDLDCLSSYL
RQSVTAIAIAPPTSSGGRSGSGFEANNIGTTGPALGAMGKSTETVEGTGT
ARAEANAGDAAAVMESVSRVDAGGAIDTGNGDQLYLRDDGRSKPGGVVVN
SAKMAKMQLLDLLPPSIERVVYVDCDVITQGPVGPFLDSVAQAWNELDRE
VEAAAAATVAADRGPATAERPTKSADRLPSRLQGESAAERSNSPAADSDD
IGPAGDGSAKTSKPLSSPSSTVIIFEDAGGHTIPVCRGCDGAHSGVVALA
RGHSERCLELWHDAFQGDGGKVTGTATDQEALDVALRQGSGCEARWIGRR
HLSFMKDAFVMAGLTRASTFGHFTGLLHPERLGTVYRRFYEWALGRGFEE
WGQGEIEACAAGL*