mRNA_L-elsbetiae_contig15499.3863.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15499.3863.1
Unique NamemRNA_L-elsbetiae_contig15499.3863.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15499.3863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15499contigL-elsbetiae_contig15499:226..695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size470
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15499.3863.1prot_L-elsbetiae_contig15499.3863.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15499 329..634 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.38429-UTR-L-elsbetiae_contig15499:225..3281622815632.38429-UTR-L-elsbetiae_contig15499:225..328Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15499 226..328 +
1691683003.2054536-UTR-L-elsbetiae_contig15499:225..3281691683003.2054536-UTR-L-elsbetiae_contig15499:225..328Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15499 226..328 +
1622815632.4411328-UTR-L-elsbetiae_contig15499:634..6951622815632.4411328-UTR-L-elsbetiae_contig15499:634..695Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15499 635..695 +
1691683003.2252605-UTR-L-elsbetiae_contig15499:634..6951691683003.2252605-UTR-L-elsbetiae_contig15499:634..695Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15499 635..695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.4290934-CDS-L-elsbetiae_contig15499:328..6341622815632.4290934-CDS-L-elsbetiae_contig15499:328..634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15499 329..634 +
1691683003.2164857-CDS-L-elsbetiae_contig15499:328..6341691683003.2164857-CDS-L-elsbetiae_contig15499:328..634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15499 329..634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15499.3863.1

>prot_L-elsbetiae_contig15499.3863.1 ID=prot_L-elsbetiae_contig15499.3863.1|Name=mRNA_L-elsbetiae_contig15499.3863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MQGHGTEKNISVRQITETRVVSRLCIAFQRKRCFPGDKKTELSVGSGHTT
GLQKAWRTASATTVGAHDPPNMMFLGYIFLTEESSCMCYGERTGEDAFIF
F*
back to top

mRNA from alignment at L-elsbetiae_contig15499:226..695+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15499.3863.1 ID=mRNA_L-elsbetiae_contig15499.3863.1|Name=mRNA_L-elsbetiae_contig15499.3863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=470bp|location=Sequence derived from alignment at L-elsbetiae_contig15499:226..695+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGAGGCAAAGGCGGGTGGGGTCTGTTCGTTTGCTGTTTCAGGGTTTTT
ACCACCAGTATTATTTTTCGTCTTTTTGAGGCTTTGCTTCTTCTGCGTGT
TTCATGCAGGGGCACGGAACGGAAAAAAACATCTCCGTCCGTCAAATAAC
GGAGACAAGAGTAGTGTCTCGCTTATGTATCGCATTTCAGAGGAAGAGAT
GCTTTCCGGGTGATAAGAAAACAGAGTTATCTGTAGGGTCGGGACACACC
ACGGGTCTGCAGAAAGCATGGCGCACAGCCAGTGCCACCACCGTTGGGGC
ACATGACCCGCCGAACATGATGTTTCTGGGGTATATTTTTTTAACAGAGG
AAAGCTCGTGCATGTGTTACGGTGAACGAACAGGTGAAGATGCTTTTATA
TTTTTTTGAGATGAGATGTGGTGTTGTGTTGGCGTTGTTGTCATGTATGT
AAAATATCAAGGTTCGCTTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15499:226..695+

>mRNA_L-elsbetiae_contig15499.3863.1 ID=mRNA_L-elsbetiae_contig15499.3863.1|Name=mRNA_L-elsbetiae_contig15499.3863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig15499:226..695+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGGGCACGGAACGGAAAAAAACATCTCCGTCCGTCAAATAACGGA
GACAAGAGTAGTGTCTCGCTTATGTATCGCATTTCAGAGGAAGAGATGCT
TTCCGGGTGATAAGAAAACAGAGTTATCTGTAGGGTCGGGACACACCACG
GGTCTGCAGAAAGCATGGCGCACAGCCAGTGCCACCACCGTTGGGGCACA
TGACCCGCCGAACATGATGTTTCTGGGGTATATTTTTTTAACAGAGGAAA
GCTCGTGCATGTGTTACGGTGAACGAACAGGTGAAGATGCTTTTATATTT
TTTTGAATGCAGGGGCACGGAACGGAAAAAAACATCTCCGTCCGTCAAAT
AACGGAGACAAGAGTAGTGTCTCGCTTATGTATCGCATTTCAGAGGAAGA
GATGCTTTCCGGGTGATAAGAAAACAGAGTTATCTGTAGGGTCGGGACAC
ACCACGGGTCTGCAGAAAGCATGGCGCACAGCCAGTGCCACCACCGTTGG
GGCACATGACCCGCCGAACATGATGTTTCTGGGGTATATTTTTTTAACAG
AGGAAAGCTCGTGCATGTGTTACGGTGAACGAACAGGTGAAGATGCTTTT
ATATTTTTTTGA
back to top