mRNA_L-elsbetiae_contig1531.3762.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1531.3762.1
Unique NamemRNA_L-elsbetiae_contig1531.3762.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1531.3762.1 vs. uniprot
Match: Q6XM73_9PHYC (FirrV-1-A14 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM73_9PHYC)

HSP 1 Score: 140 bits (354), Expect = 4.500e-39
Identity = 71/130 (54.62%), Postives = 89/130 (68.46%), Query Frame = 1
Query:   58 NIGKKRNFTCGKATSKILACMDDDDFYQRSYLEHAVRVMRERKVNMVACRDMIVFFPLVEGKMTMVRGSVGHEATFVFTKQHWKKHKF-APTPVGEGVSMITGKFYNELDIQKVMICFSHGENTYDKTQL 444
            +IG KRN+ C  ATSKIL  +DDDD Y   Y+E+AVR +R RKVN+V CRDM+V+F   +GK+  VRGS  HEAT V TKQHW +  +   T  GE   ++ G FYNELDI + MIC +HG NT DK+ L
Sbjct:   75 SIGAKRNYACSVATSKILVNVDDDDLYHPRYVENAVRELRGRKVNLVGCRDMMVYF-FDDGKLIYVRGSHVHEATIVCTKQHWTQFPYRCETDRGEARPLLQGSFYNELDISQTMICLAHGHNTVDKSGL 203          
BLAST of mRNA_L-elsbetiae_contig1531.3762.1 vs. uniprot
Match: R4THL8_9PHYC (Glycotransferase domain-containing protein n=3 Tax=unclassified Prymnesiovirus TaxID=358403 RepID=R4THL8_9PHYC)

HSP 1 Score: 60.5 bits (145), Expect = 7.130e-8
Identity = 41/153 (26.80%), Postives = 76/153 (49.67%), Query Frame = 1
Query:   10 DMPTVACKYHECDIANNIGKKRNFTCGKATSKILACMDDDDFYQRSYLEHAVRVMRERKVNMVA-CRDMIVFFPLVEGKMTMVRGSVGHEA--TFVFTKQHWKKHKFAP-TPVGEGVSMITGKF--YNELDIQKVMICFSHGENTYDKTQLLE 450
            D+P V  KY + D   ++GKKRN    K+   I+  MDDDD+Y +  + HAV ++      + A   ++ ++F  ++        +  H    TF F +     H++     + E  + +      + +L+ +K ++ FSH +NT+DK +LL+
Sbjct:   68 DIPQV--KYFKYDTKMSLGKKRNLMHEKSCGDIIVYMDDDDYYPKERVSHAVNMLVTHPNALCAGASEIYIWFKHIQQMWQFGPYNANHATAGTFAFKRALLNDHRYDDHAALAEEKAFLKNYTVPFVQLEPKKTILVFSHTQNTFDKKKLLQ 218          
BLAST of mRNA_L-elsbetiae_contig1531.3762.1 vs. uniprot
Match: A0A6C0LF28_9ZZZZ (Glyco_trans_2-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LF28_9ZZZZ)

HSP 1 Score: 59.7 bits (143), Expect = 1.200e-7
Identity = 40/146 (27.40%), Postives = 67/146 (45.89%), Query Frame = 1
Query:   31 KYHECDIANNIGKKRNFTCGKATSKILACMDDDDFYQRSYLEHAVRVMRERKVNMVA-CRDMIVFFPLVEGKMTMVRGSVGHE--ATFVFTKQHWKKHKFAPTPVGEGVSMITGKF---YNELDIQKVMICFSHGENTYDKTQLLE 450
            KY   D    +GKKRN    K    I+  MDDDD+Y R+ + HAV  +++    M A   +M ++F  +            H   ATF F ++  ++ ++          +    +   + +LD  K ++ FSH  N+YDK  +L+
Sbjct:   64 KYFSYDKKMTLGKKRNLMHEKCKGDIILYMDDDDYYPRTRITHAVETLQKNPTAMCAGSSEMYIYFKHIHKMYKFGPYGPTHSTAATFAFRRELLEQTRYDDEACVAEEKIFLKNYTIPFVQLDPTKSILVFSHIHNSYDKKTMLD 209          
BLAST of mRNA_L-elsbetiae_contig1531.3762.1 vs. uniprot
Match: A0A6C0B8X0_9ZZZZ (Glyco_trans_2-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0B8X0_9ZZZZ)

HSP 1 Score: 58.9 bits (141), Expect = 2.190e-7
Identity = 38/146 (26.03%), Postives = 66/146 (45.21%), Query Frame = 1
Query:   31 KYHECDIANNIGKKRNFTCGKATSKILACMDDDDFYQRSYLEHAVRVMRER-KVNMVACRDMIVFFPLVEGKMTMVRGSVGHE--ATFVFTKQHWKKHKFAPTPVGEGVSMITGKF---YNELDIQKVMICFSHGENTYDKTQLLE 450
            KY   D    +G+KRN    K    I+  MDDDD+Y ++ + HAV  +++  K       +M ++F  +            H   ATF F K+  ++ ++          +    +   + +LD  K ++ FSH  N+YDK  +L+
Sbjct:   61 KYFSYDEKMTLGRKRNLMHEKCKGDIILYMDDDDYYPKTRISHAVETLQKNPKALCAGSSEMYIYFKHIHKMYKFGPYGATHSTAATFAFRKELLEQTRYDDEACVAEEKIFLKNYTIPFVQLDATKSILVFSHIHNSYDKKTMLD 206          
BLAST of mRNA_L-elsbetiae_contig1531.3762.1 vs. uniprot
Match: A0A6C0I6X2_9ZZZZ (Glyco_trans_2-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0I6X2_9ZZZZ)

HSP 1 Score: 56.6 bits (135), Expect = 1.530e-6
Identity = 43/144 (29.86%), Postives = 69/144 (47.92%), Query Frame = 1
Query:   61 IGKKRNFTCGKATSKILACMDDDDFYQRSYLEHAVRVMRERKVNMVA-CRDMIVFFPLVEGKMTMVRGSVGHE-----ATFVFTKQHWKKHKFAPTPVGEGVSMITGKFY--------NELDIQKVMICFSHGENTYDKTQLLE 450
            +GKKRN    K +  I+  MDDDD+Y +  + HAV+ + E    ++A   +M ++F   + K T+ +     E     ATF F     KK     T   E  ++   + +         +LD QK ++ FSH  N+ +K +LLE
Sbjct:  100 LGKKRNLMHSKCSGDIIIYMDDDDYYPKDRVSHAVQTLLENPNFLIAGSSEMHIYF---DSKNTVYQCGPYKEFHSTAATFAF-----KKELLLQTSYNEENALAEERHFLKNYTIPLKQLDTQKSIMVFSHKHNSLNKEKLLE 235          
BLAST of mRNA_L-elsbetiae_contig1531.3762.1 vs. uniprot
Match: A0A2E1MB71_9PROT (Glyco_trans_2-like domain-containing protein n=1 Tax=Candidatus Pelagibacter sp. TaxID=2024849 RepID=A0A2E1MB71_9PROT)

HSP 1 Score: 56.2 bits (134), Expect = 2.110e-6
Identity = 38/149 (25.50%), Postives = 63/149 (42.28%), Query Frame = 1
Query:   31 KYHECDIANNIGKKRNFTCGKATSKILACMDDDDFYQRSYLEHAV-RVMRERKVNMVACRDMIVFFPLVEGKMTMVRGSVGHEATFVFTKQHWKKHKFAPTPVGEGVSMITGKFYN--------ELDIQKVMICFSHGENTYDKTQLLE 450
            KY       ++G+KRN    K    I+  MDDDD+Y +  + HAV  +MR  +       ++ ++F  +            H     F    +KK     T   +   +   K++         +LD  K ++ FSH  NT+DK ++LE
Sbjct:   67 KYFYYKTKMSLGRKRNLMHEKTKGDIIVYMDDDDYYPKERISHAVGELMRNPEALCAGSSEIYIYFKEIRKMYKFGPYKKNHATAGTFA---FKKELLQQTRYDDNACIAEEKYFLKDYTIPFVQLDPMKTILVFSHIHNTFDKRKMLE 212          
BLAST of mRNA_L-elsbetiae_contig1531.3762.1 vs. uniprot
Match: A0A6C0JCU0_9ZZZZ (Glyco_trans_2-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JCU0_9ZZZZ)

HSP 1 Score: 56.2 bits (134), Expect = 2.160e-6
Identity = 42/154 (27.27%), Postives = 74/154 (48.05%), Query Frame = 1
Query:    7 ADMPTVACKYHECDIANNIGKKRNFTCGKATSKILACMDDDDFYQRSYLEHAVRVMRERKVNMVACRDMI-VFFPLVEGKMTMVRGSVGHEA--TFVFTKQHWKKHKFAP-TPVGEGVSMITGKF--YNELDIQKVMICFSHGENTYDKTQLLE 450
            A++P +  KY + D   ++GKKRN    K +   +  MDDDD+Y R  + HAV  +++    M A   +I V F  +   +        H    TF F +    + ++     + E  + +      + +L+ ++ ++ FSH +NT+DK  LLE
Sbjct:   73 ANIPQI--KYFKYDEKMSLGKKRNLMHSKTSGAYIVYMDDDDYYPRDRVSHAVDTLKQHPRAMCAGSSIIHVHFKHINKIVEFGPYGPNHSTAGTFAFRRALLDETRYDDDAALAEEKAFLKNYTVPFVQLNPKQTILVFSHNQNTFDKRTLLE 224          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1531.3762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Q6XM73_9PHYC4.500e-3954.62FirrV-1-A14 n=1 Tax=Feldmannia irregularis virus a... [more]
R4THL8_9PHYC7.130e-826.80Glycotransferase domain-containing protein n=3 Tax... [more]
A0A6C0LF28_9ZZZZ1.200e-727.40Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A6C0B8X0_9ZZZZ2.190e-726.03Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A6C0I6X2_9ZZZZ1.530e-629.86Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A2E1MB71_9PROT2.110e-625.50Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A6C0JCU0_9ZZZZ2.160e-627.27Glyco_trans_2-like domain-containing protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1531contigL-elsbetiae_contig1531:5295..5744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.2
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog342113.DM82_3899
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl transferase family 2
EggNOG OGs1K47E@119060,1PEV1@1224,2W8E3@28216,COG0463@1,COG0463@2
COG Functional cat.M
Best tax levelBurkholderiaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size450
Cds size438
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.771501-CDS-L-elsbetiae_contig1531:5294..57321622815623.771501-CDS-L-elsbetiae_contig1531:5294..5732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1531 5295..5732 -
1691682997.8790956-CDS-L-elsbetiae_contig1531:5294..57321691682997.8790956-CDS-L-elsbetiae_contig1531:5294..5732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1531 5295..5732 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.7842152-UTR-L-elsbetiae_contig1531:5732..57441622815623.7842152-UTR-L-elsbetiae_contig1531:5732..5744Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1531 5733..5744 -
1691682997.8911676-UTR-L-elsbetiae_contig1531:5732..57441691682997.8911676-UTR-L-elsbetiae_contig1531:5732..5744Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1531 5733..5744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1531.3762.1prot_L-elsbetiae_contig1531.3762.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1531 5295..5732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1531.3762.1

>prot_L-elsbetiae_contig1531.3762.1 ID=prot_L-elsbetiae_contig1531.3762.1|Name=mRNA_L-elsbetiae_contig1531.3762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
MPTVACKYHECDIANNIGKKRNFTCGKATSKILACMDDDDFYQRSYLEHA
VRVMRERKVNMVACRDMIVFFPLVEGKMTMVRGSVGHEATFVFTKQHWKK
HKFAPTPVGEGVSMITGKFYNELDIQKVMICFSHGENTYDKTQLLE
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mRNA from alignment at L-elsbetiae_contig1531:5295..5744-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1531.3762.1 ID=mRNA_L-elsbetiae_contig1531.3762.1|Name=mRNA_L-elsbetiae_contig1531.3762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig1531:5295..5744- (Laminarionema elsbetiae ELsaHSoW15)
GTGTTCGCCGACATGCCTACCGTCGCGTGCAAGTACCACGAGTGCGACAT CGCTAACAATATCGGCAAAAAGCGAAACTTTACGTGCGGTAAGGCAACGA GCAAAATTCTCGCGTGCATGGACGATGACGATTTTTATCAGAGAAGCTAT CTGGAACACGCGGTGCGTGTGATGAGGGAAAGGAAAGTAAACATGGTGGC CTGCCGGGACATGATTGTGTTTTTCCCGCTCGTCGAAGGGAAGATGACCA TGGTTCGAGGTTCTGTGGGTCACGAGGCTACCTTCGTGTTCACCAAACAA CACTGGAAGAAGCACAAGTTCGCACCGACGCCCGTCGGGGAAGGCGTGAG CATGATCACTGGTAAATTCTACAACGAGCTGGACATCCAGAAAGTGATGA TATGTTTTAGTCATGGCGAAAACACGTACGACAAAACGCAGCTCCTCGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1531:5295..5744-

>mRNA_L-elsbetiae_contig1531.3762.1 ID=mRNA_L-elsbetiae_contig1531.3762.1|Name=mRNA_L-elsbetiae_contig1531.3762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig1531:5295..5744- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTACCGTCGCGTGCAAGTACCACGAGTGCGACATCGCTAACAATAT
CGGCAAAAAGCGAAACTTTACGTGCGGTAAGGCAACGAGCAAAATTCTCG
CGTGCATGGACGATGACGATTTTTATCAGAGAAGCTATCTGGAACACGCG
GTGCGTGTGATGAGGGAAAGGAAAGTAAACATGGTGGCCTGCCGGGACAT
GATTGTGTTTTTCCCGCTCGTCGAAGGGAAGATGACCATGGTTCGAGGTT
CTGTGGGTCACGAGGCTACCTTCGTGTTCACCAAACAACACTGGAAGAAG
CACAAGTTCGCACCGACGCCCGTCGGGGAAGGCGTGAGCATGATCACTGG
TAAATTCTACAACGAGCTGGACATCCAGAAAGTGATGATATGTTTTAGTC
ATGGCGAAAACACGTACGACAAAACGCAGCTCCTCGAAATGCCTACCGTC
GCGTGCAAGTACCACGAGTGCGACATCGCTAACAATATCGGCAAAAAGCG
AAACTTTACGTGCGGTAAGGCAACGAGCAAAATTCTCGCGTGCATGGACG
ATGACGATTTTTATCAGAGAAGCTATCTGGAACACGCGGTGCGTGTGATG
AGGGAAAGGAAAGTAAACATGGTGGCCTGCCGGGACATGATTGTGTTTTT
CCCGCTCGTCGAAGGGAAGATGACCATGGTTCGAGGTTCTGTGGGTCACG
AGGCTACCTTCGTGTTCACCAAACAACACTGGAAGAAGCACAAGTTCGCA
CCGACGCCCGTCGGGGAAGGCGTGAGCATGATCACTGGTAAATTCTACAA
CGAGCTGGACATCCAGAAAGTGATGATATGTTTTAGTCATGGCGAAAACA
CGTACGACAAAACGCAGCTCCTCGAA
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