mRNA_L-elsbetiae_contig15212.3720.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15212.3720.1
Unique NamemRNA_L-elsbetiae_contig15212.3720.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15212.3720.1 vs. uniprot
Match: A0A6H5KPS7_9PHAE (HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPS7_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 5.950e-73
Identity = 109/113 (96.46%), Postives = 111/113 (98.23%), Query Frame = -1
Query:    4 EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYSDPAVTSDKKHWPFDVVEGPGGKPTIEVSFKGERKQFAPEEISSMVLVKMKEIAEAYLGKE 342
            EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRY+DPAV SDKKHWPF VVEGPGGKPTIEVSFKGE+KQFAPEEISSMVLVKMKEIAEAYLGKE
Sbjct:   29 EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYTDPAVASDKKHWPFHVVEGPGGKPTIEVSFKGEKKQFAPEEISSMVLVKMKEIAEAYLGKE 141          
BLAST of mRNA_L-elsbetiae_contig15212.3720.1 vs. uniprot
Match: A0A6H5JJT8_9PHAE (HSP70 protein n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5JJT8_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 1.530e-67
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = -1
Query:    1 EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYSDPAVTSDKKHWPFDVVEGPGGKPTIEVSFKGERKQFAPEEISSMVLVKMKEIAEAYLGKEV 342
            EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRY+DPAV SDKKHWPF VVEGPGGKPTIEVSFKGE+KQFAPEEISSMVLVKMKEIAEAYLGKEV
Sbjct:   29 EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYTDPAVASDKKHWPFHVVEGPGGKPTIEVSFKGEKKQFAPEEISSMVLVKMKEIAEAYLGKEV 142          
BLAST of mRNA_L-elsbetiae_contig15212.3720.1 vs. uniprot
Match: A0A6H5KQY2_9PHAE (HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY2_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 2.870e-65
Identity = 107/114 (93.86%), Postives = 111/114 (97.37%), Query Frame = -1
Query:    1 EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYSDPAVTSDKKHWPFDVVEGPGGKPTIEVSFKGERKQFAPEEISSMVLVKMKEIAEAYLGKEV 342
            EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGR+++DPAV SDKKHWPF VV GPGGKPTIEVSFKGE+KQFAPEEISSMVLVKMKEIAEAYLGKEV
Sbjct:   29 EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRKFTDPAVASDKKHWPFSVVAGPGGKPTIEVSFKGEKKQFAPEEISSMVLVKMKEIAEAYLGKEV 142          
BLAST of mRNA_L-elsbetiae_contig15212.3720.1 vs. uniprot
Match: A0A7S2MA59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2MA59_9STRA)

HSP 1 Score: 194 bits (493), Expect = 2.620e-61
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = -1
Query:    1 EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYSDPAVTSDKKHWPFDVVEGPGGKPTIEVSFKGERKQFAPEEISSMVLVKMKEIAEAYLGKEV 342
            EIIANDQGNRTTPSYVAFTETERLIGDAAK+Q AMNATNTVFDAKRLIGR++SDP V SD KHWPF V  GPGG P IEV +KGE KQF  EEISSMVL KM+EIAEAYLGKEV
Sbjct:   29 EIIANDQGNRTTPSYVAFTETERLIGDAAKSQAAMNATNTVFDAKRLIGRKFSDPGVQSDMKHWPFKVTPGPGGTPIIEVEYKGETKQFKAEEISSMVLTKMREIAEAYLGKEV 142          
BLAST of mRNA_L-elsbetiae_contig15212.3720.1 vs. uniprot
Match: A0A196SJW9_BLAHN (Heat shock protein (Fragment) n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SJW9_BLAHN)

HSP 1 Score: 191 bits (484), Expect = 4.040e-60
Identity = 92/114 (80.70%), Postives = 101/114 (88.60%), Query Frame = -1
Query:    1 EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYSDPAVTSDKKHWPFDVVEGPGGKPTIEVSFKGERKQFAPEEISSMVLVKMKEIAEAYLGKEV 342
            EIIANDQG RTTPSYVAFT+TERLIGDAAKNQVAMN TNTVFDAKRLIGR++ DP+V SD KHWPF +  GP GKP IEV +KGE+K F+PEEISSMVL KMK+IAEAYLGKEV
Sbjct:   30 EIIANDQGQRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRKFDDPSVQSDMKHWPFTLKAGPDGKPLIEVEYKGEKKTFSPEEISSMVLSKMKQIAEAYLGKEV 143          
BLAST of mRNA_L-elsbetiae_contig15212.3720.1 vs. uniprot
Match: H6WB83_VAULI (Heat shock protein 70 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB83_VAULI)

HSP 1 Score: 204 bits (518), Expect = 4.220e-60
Identity = 99/114 (86.84%), Postives = 106/114 (92.98%), Query Frame = -1
Query:    1 EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYSDPAVTSDKKHWPFDVVEGPGGKPTIEVSFKGERKQFAPEEISSMVLVKMKEIAEAYLGKEV 342
            EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRR++D AV  D KHWPF V++GPGGKP I+V+FKGE K FAPEEISSMVL+KMKEIAEAYLGKEV
Sbjct:   29 EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRFTDTAVQQDMKHWPFTVIQGPGGKPIIKVNFKGEEKTFAPEEISSMVLLKMKEIAEAYLGKEV 142          
BLAST of mRNA_L-elsbetiae_contig15212.3720.1 vs. uniprot
Match: W7TRP6_9STRA (Heat shock protein 70 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRP6_9STRA)

HSP 1 Score: 204 bits (518), Expect = 9.320e-60
Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = -1
Query:    1 EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYSDPAVTSDKKHWPFDVVEGPGGKPTIEVSFKGERKQFAPEEISSMVLVKMKEIAEAYLGKEV 342
            EIIANDQGNRTTPSYVAFTE+ERLIGDAAKNQVAMNA+NTVFDAKRLIGRR+SDP V +D KHWPF VV+GPGGKP I+V+FKGE K FAPEEISSMVL+KM+EIAEAYLGKEV
Sbjct:   30 EIIANDQGNRTTPSYVAFTESERLIGDAAKNQVAMNASNTVFDAKRLIGRRFSDPVVQADMKHWPFTVVQGPGGKPLIQVTFKGESKTFAPEEISSMVLIKMREIAEAYLGKEV 143          
BLAST of mRNA_L-elsbetiae_contig15212.3720.1 vs. uniprot
Match: W2LHN5_PHYPR (Hsp70-like protein (Fragment) n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LHN5_PHYPR)

HSP 1 Score: 188 bits (478), Expect = 1.530e-59
Identity = 89/114 (78.07%), Postives = 100/114 (87.72%), Query Frame = -1
Query:    1 EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYSDPAVTSDKKHWPFDVVEGPGGKPTIEVSFKGERKQFAPEEISSMVLVKMKEIAEAYLGKEV 342
            EIIANDQGNRTTPSYVAFT++ERLIGDAAKNQVAMNA NTVFDAKRLIGR++SDP V +D KHWPF +  GPG KP I V FKGE K F PEEISSMVL+KM+E+AEA++GKEV
Sbjct:   30 EIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNAANTVFDAKRLIGRKFSDPIVQADIKHWPFKITSGPGDKPQITVQFKGESKTFQPEEISSMVLIKMREVAEAFIGKEV 143          
BLAST of mRNA_L-elsbetiae_contig15212.3720.1 vs. uniprot
Match: W2NND8_PHYPR (Hsp70-like protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=W2NND8_PHYPR)

HSP 1 Score: 187 bits (476), Expect = 7.580e-59
Identity = 89/114 (78.07%), Postives = 100/114 (87.72%), Query Frame = -1
Query:    1 EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYSDPAVTSDKKHWPFDVVEGPGGKPTIEVSFKGERKQFAPEEISSMVLVKMKEIAEAYLGKEV 342
            EIIANDQGNRTTPSYVAFT++ERLIGDAAKNQVAMNA NTVFDAKRLIGR++SDP V +D KHWPF +  GPG KP I V FKGE K F PEEISSMVL+KM+E+AEA++GKEV
Sbjct:   30 EIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNAHNTVFDAKRLIGRKFSDPIVQADIKHWPFKITSGPGDKPQITVQFKGESKTFQPEEISSMVLIKMREVAEAFIGKEV 143          
BLAST of mRNA_L-elsbetiae_contig15212.3720.1 vs. uniprot
Match: A0A7S3Y1R9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1R9_HETAK)

HSP 1 Score: 193 bits (490), Expect = 8.730e-59
Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = -1
Query:    1 EIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYSDPAVTSDKKHWPFDVVEGPGGKPTIEVSFKGERKQFAPEEISSMVLVKMKEIAEAYLGKEV 342
            EIIANDQGNRTTPSYVAFTETERLIGD+AKNQVAMNA+NTVFDAKR IGR+Y DPA   D KH PF ++ G GGKP I+V FKGE KQFAPEEISSMVLVKMKEIAEAYLGK V
Sbjct:   55 EIIANDQGNRTTPSYVAFTETERLIGDSAKNQVAMNASNTVFDAKRFIGRKYDDPATQEDMKHLPFTIINGKGGKPMIQVQFKGETKQFAPEEISSMVLVKMKEIAEAYLGKNV 168          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15212.3720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPS7_9PHAE5.950e-7396.46HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JJT8_9PHAE1.530e-6796.49HSP70 protein n=10 Tax=Phaeophyceae TaxID=2870 Rep... [more]
A0A6H5KQY2_9PHAE2.870e-6593.86HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A7S2MA59_9STRA2.620e-6183.33Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A196SJW9_BLAHN4.040e-6080.70Heat shock protein (Fragment) n=1 Tax=Blastocystis... [more]
H6WB83_VAULI4.220e-6086.84Heat shock protein 70 n=1 Tax=Vaucheria litorea Ta... [more]
W7TRP6_9STRA9.320e-6085.96Heat shock protein 70 n=2 Tax=Monodopsidaceae TaxI... [more]
W2LHN5_PHYPR1.530e-5978.07Hsp70-like protein (Fragment) n=1 Tax=Phytophthora... [more]
W2NND8_PHYPR7.580e-5978.07Hsp70-like protein (Fragment) n=2 Tax=Phytophthora... [more]
A0A7S3Y1R9_HETAK8.730e-5982.46Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15212contigL-elsbetiae_contig15212:1277..1619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score120.9
Seed ortholog evalue3.8e-25
Seed eggNOG ortholog9612.ENSCAFP00000041804
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-specific glutamate dehydrogenase
EggNOG OGs28NKG@1,2QV65@2759,39UXP@33154,3BNIW@33208,3CRBT@33213,3JJBE@40674,48FN8@7711,49CID@7742
COG Functional cat.S
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
Exons1
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.4346676-CDS-L-elsbetiae_contig15212:1276..16181622815619.4346676-CDS-L-elsbetiae_contig15212:1276..1618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15212 1277..1618 +
1691682995.2001386-CDS-L-elsbetiae_contig15212:1276..16181691682995.2001386-CDS-L-elsbetiae_contig15212:1276..1618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15212 1277..1618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15212.3720.1prot_L-elsbetiae_contig15212.3720.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15212 1277..1618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15212.3720.1

>prot_L-elsbetiae_contig15212.3720.1 ID=prot_L-elsbetiae_contig15212.3720.1|Name=mRNA_L-elsbetiae_contig15212.3720.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
HLLAQVRLGDLFHLDEHHGRDLLRRELLPLALERHLDGGLPSGALDHVEG
PVLLVRGHGGVAVPTADEALGVEDGVGGVHRHLVLGSIADQALGLGEGHV
RRGRAVALVVRDDL
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mRNA from alignment at L-elsbetiae_contig15212:1277..1619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15212.3720.1 ID=mRNA_L-elsbetiae_contig15212.3720.1|Name=mRNA_L-elsbetiae_contig15212.3720.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=343bp|location=Sequence derived from alignment at L-elsbetiae_contig15212:1277..1619+ (Laminarionema elsbetiae ELsaHSoW15)
CACCTCCTTGCCCAGGTACGCCTCGGCGATCTCTTTCATCTTGACGAGCA CCATGGACGAGATCTCCTCCGGCGCGAACTGCTTCCTCTCGCCCTTGAAA GACACCTCGATGGTGGGCTTCCCTCCGGGGCCCTCGACCACGTCGAAGGG CCAGTGCTTCTTGTCCGAGGTCACGGCGGGGTCGCTGTACCTACGGCCGA TGAGGCGCTTGGCGTCGAAGACGGTGTTGGTGGCGTTCATCGCCACCTGG TTCTTGGCAGCATCGCCGATCAGGCGCTCGGTCTCGGTGAAGGCCACGTA CGACGGGGTCGTGCGGTTGCCCTGGTCGTTCGCGATGATCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15212:1277..1619+

>mRNA_L-elsbetiae_contig15212.3720.1 ID=mRNA_L-elsbetiae_contig15212.3720.1|Name=mRNA_L-elsbetiae_contig15212.3720.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig15212:1277..1619+ (Laminarionema elsbetiae ELsaHSoW15)
CACCTCCTTGCCCAGGTACGCCTCGGCGATCTCTTTCATCTTGACGAGCA
CCATGGACGAGATCTCCTCCGGCGCGAACTGCTTCCTCTCGCCCTTGAAA
GACACCTCGATGGTGGGCTTCCCTCCGGGGCCCTCGACCACGTCGAAGGG
CCAGTGCTTCTTGTCCGAGGTCACGGCGGGGTCGCTGTACCTACGGCCGA
TGAGGCGCTTGGCGTCGAAGACGGTGTTGGTGGCGTTCATCGCCACCTGG
TTCTTGGCAGCATCGCCGATCAGGCGCTCGGTCTCGGTGAAGGCCACGTA
CGACGGGGTCGTGCGGTTGCCCTGGTCGTTCGCGATGATCTCCACCTCCT
TGCCCAGGTACGCCTCGGCGATCTCTTTCATCTTGACGAGCACCATGGAC
GAGATCTCCTCCGGCGCGAACTGCTTCCTCTCGCCCTTGAAAGACACCTC
GATGGTGGGCTTCCCTCCGGGGCCCTCGACCACGTCGAAGGGCCAGTGCT
TCTTGTCCGAGGTCACGGCGGGGTCGCTGTACCTACGGCCGATGAGGCGC
TTGGCGTCGAAGACGGTGTTGGTGGCGTTCATCGCCACCTGGTTCTTGGC
AGCATCGCCGATCAGGCGCTCGGTCTCGGTGAAGGCCACGTACGACGGGG
TCGTGCGGTTGCCCTGGTCGTTCGCGATGATCTC
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