mRNA_L-elsbetiae_contig152.3704.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig152.3704.1
Unique NamemRNA_L-elsbetiae_contig152.3704.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig152.3704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig152contigL-elsbetiae_contig152:2477..2994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size518
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig152.3704.1prot_L-elsbetiae_contig152.3704.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig152 2535..2879 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.0730653-UTR-L-elsbetiae_contig152:2476..25341622815618.0730653-UTR-L-elsbetiae_contig152:2476..2534Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig152 2477..2534 +
1691682994.3469052-UTR-L-elsbetiae_contig152:2476..25341691682994.3469052-UTR-L-elsbetiae_contig152:2476..2534Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig152 2477..2534 +
1622815618.0966647-UTR-L-elsbetiae_contig152:2879..29941622815618.0966647-UTR-L-elsbetiae_contig152:2879..2994Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig152 2880..2994 +
1691682994.363598-UTR-L-elsbetiae_contig152:2879..29941691682994.363598-UTR-L-elsbetiae_contig152:2879..2994Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig152 2880..2994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.0855727-CDS-L-elsbetiae_contig152:2534..28791622815618.0855727-CDS-L-elsbetiae_contig152:2534..2879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig152 2535..2879 +
1691682994.3554387-CDS-L-elsbetiae_contig152:2534..28791691682994.3554387-CDS-L-elsbetiae_contig152:2534..2879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig152 2535..2879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig152.3704.1

>prot_L-elsbetiae_contig152.3704.1 ID=prot_L-elsbetiae_contig152.3704.1|Name=mRNA_L-elsbetiae_contig152.3704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MDFFNILGVFLLGWTNTTSLDIWNTVGISRESRLQCGLGSIFDYRMYLLS
VCLSRWGSFDFMACARGLRSCCNYRLAWKLISFGSKSGVYVLRCLRMYYP
TTKGQAPPFHPAPS*
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mRNA from alignment at L-elsbetiae_contig152:2477..2994+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig152.3704.1 ID=mRNA_L-elsbetiae_contig152.3704.1|Name=mRNA_L-elsbetiae_contig152.3704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=518bp|location=Sequence derived from alignment at L-elsbetiae_contig152:2477..2994+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTGGTAAAAGACGAAATATATGCTGTTTGACCTGGCAGAGTTGTGCAG
GGGAGGTGATGGACTTTTTCAACATTTTAGGTGTTTTTCTACTGGGCTGG
ACCAATACTACGTCACTAGATATATGGAATACCGTTGGAATCTCACGGGA
GTCTCGTCTCCAATGTGGGTTAGGTTCAATTTTTGACTACCGTATGTATC
TGCTGTCTGTTTGTCTTTCAAGATGGGGATCGTTTGACTTTATGGCGTGC
GCGCGTGGCTTGCGGTCTTGCTGTAATTATCGGCTCGCCTGGAAGCTGAT
CTCGTTTGGAAGCAAAAGCGGTGTGTATGTTCTGAGATGTCTCAGAATGT
ACTATCCTACCACGAAAGGGCAAGCCCCTCCCTTTCATCCGGCTCCATCC
TGAGCATTTTTGTGTTGGCCCAAAGATCACCATCGAATCCATCCGGCCGT
GCCCCCCTGCTGTAGGCTGTGCCCCTGTCGCTCCCCTATTTCAACTTTTA
TCCTCTCTCGCCCACGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig152:2477..2994+

>mRNA_L-elsbetiae_contig152.3704.1 ID=mRNA_L-elsbetiae_contig152.3704.1|Name=mRNA_L-elsbetiae_contig152.3704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig152:2477..2994+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACTTTTTCAACATTTTAGGTGTTTTTCTACTGGGCTGGACCAATAC
TACGTCACTAGATATATGGAATACCGTTGGAATCTCACGGGAGTCTCGTC
TCCAATGTGGGTTAGGTTCAATTTTTGACTACCGTATGTATCTGCTGTCT
GTTTGTCTTTCAAGATGGGGATCGTTTGACTTTATGGCGTGCGCGCGTGG
CTTGCGGTCTTGCTGTAATTATCGGCTCGCCTGGAAGCTGATCTCGTTTG
GAAGCAAAAGCGGTGTGTATGTTCTGAGATGTCTCAGAATGTACTATCCT
ACCACGAAAGGGCAAGCCCCTCCCTTTCATCCGGCTCCATCCTGAATGGA
CTTTTTCAACATTTTAGGTGTTTTTCTACTGGGCTGGACCAATACTACGT
CACTAGATATATGGAATACCGTTGGAATCTCACGGGAGTCTCGTCTCCAA
TGTGGGTTAGGTTCAATTTTTGACTACCGTATGTATCTGCTGTCTGTTTG
TCTTTCAAGATGGGGATCGTTTGACTTTATGGCGTGCGCGCGTGGCTTGC
GGTCTTGCTGTAATTATCGGCTCGCCTGGAAGCTGATCTCGTTTGGAAGC
AAAAGCGGTGTGTATGTTCTGAGATGTCTCAGAATGTACTATCCTACCAC
GAAAGGGCAAGCCCCTCCCTTTCATCCGGCTCCATCCTGA
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