mRNA_L-elsbetiae_contig1518.3701.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1518.3701.1 vs. uniprot
Match: D8LBV2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV2_ECTSI) HSP 1 Score: 477 bits (1227), Expect = 5.410e-141 Identity = 720/1243 (57.92%), Postives = 796/1243 (64.04%), Query Frame = 1
Query: 28 GAARLLTALAVLLPAASAQEAG-----AGVG---GLVGEQIAVGFRGRLGGATLRRLQDDDGCTDQTSVGDAEAGIAQYSDPDACVGDAPLVGCNVLGISECRLCLTKGGDASTTLPACPEDVVEIVEEIFPQTAETPAPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQ---------TPAPSDQLELPXXXXXXXXXXXXXXXXPSLVDVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGATSSPAATSGPAAVDTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRDL-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSSP---TGXXXXXXXXXXXXXXXXXXXXXXXAPI------------------------------------DDPQESLIGTITIVSEEEPACEATATCGEVVEDGLEDSLGRDGTGTVNVTDVTVSSVAXXXXXXTTVAVDGVPSGGERRVLFATAG----NS-----LRGXXXXXXXXXXXANETETEIDYVSGPDASSNMTSSQQAAEQINALAETGIADLLEELGLPPDSEVELGTTKYVQIGAVTD-VSDFDDSLFAATATDRSISAGAYWGFAVSLIILVLGACLXXXXXMFCITKKDESNKRNAAGKRLDNLEEKTAIDDDGVGEFDLPKKAGTATHKPQKSGSLLGSIPFFGSVTRQNSVEGDVEAGSTPHSPVPEDHIFAYPPSAMLSGGGGTGKTQDPDDIRSPSSVGAPSGNDFFYATRRFGEPPLNMPSPRVQTAALAXXXXXXXXXXXXXXXXXXXXXXVA---------GLSSGEWPSPMSAXXXXXXXXXXXXXXXXXXXXXXXXXXLRSSSTVSAVSAGSMETKHDIGSDLRASSLSPASRAGGXXXXXXXXXXXXXXXXXXXXXXXXXXGKGXXXXXXXXXXXXXXXXXXXXXXXXHK-RAEFEALQLEHEAKHKEISARGRMALADFLLGTSDMTSPSSV-GRVGG-LPTVMEEASPTGAGSSSSDAGTSSQFAEGSQVGSQVSSSAEGTVIVQVGPGSLDSVADSAQGSSSAE 3519
GAAR L ALA+LLPA++ A A VG GL GE++AVGFRGRL T+RRLQ+D+GCT+ TSVGDAEAGIAQY DPDAC+ D PLVGCNVLGIS CRLC+T GG+A+ LP+CPE V EI+EE+FPQT +T AP XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXX XXXXXXXXXX T A XXXXXXXXXXXXXXXX XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX A + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +T +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + L PXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXX P+ SP TG XXXXXXXXXXXXXXX D+P SLIG+ITI+S+EEP CE C EVVEDGLE SLGR+GT VNVTDVTV+S A A D G R +LF G NS LRG N+TETEI+Y S PD SSN+T +QQAAEQINALAETGIADLL+E+GLPPD+EVELG TK+VQ+G +TD D+D AA A DRSIS AY GFA+ XXXXXM CI+KKD S +R++ RL+ +EE TAI+DDG EF+LP K + + ++ S + IPFFG+ ++ + E D+EAG+T V EDHIFAYPP S GG +GKTQD D P+ +GAPSGNDFFYAT+RF +P +N PSPR T ALA XXXXXXXXXXXXX A G S EWP P+S SSST+SAVSAGSMETKHD+ SD RASSLSPA RAG XXXXXXXXXXXX XXXXXXXXXXXXXXX + RAEF ALQ EHEAK+KEISARGRMALADFLLGTSDMTSP+S GR+GG LPTVMEE SP GA ++ SDAGTSSQ AEGSQVGSQVSSSAEGTVIVQV P +SV DSA S AE
Sbjct: 6 GAARFLAALALLLPASTLAAAAPLGTTAAVGAVRGLEGEEVAVGFRGRLAARTVRRLQEDEGCTENTSVGDAEAGIAQYDDPDACLRDGPLVGCNVLGISSCRLCVTNGGEAADYLPSCPEGVEEIIEELFPQTRDTDAPSTAPPATETPLLEGATPAPADLVATPIPSEVGGTSSPAAXXXXXXXXXXXATSAPAIATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAXXXXXXXXATTAXXXXXXXXXXXXXXXXXXXAIVTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXAXXXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTVPTLAPXXXXXXXXXXXXXXXXXXGETWAPNLVRELPXXXXXXXXXXXXXXXXSLLAPTVSPFAFTGTPTAAPTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDDEPDGSLIGSITIISDEEPECEGAGNCEEVVEDGLESSLGRNGT--VNVTDVTVTSTA--------AAADA----GRRVLLFVADGDVADNSSRNRLLRGSRQLQEEEEAAGNQTETEIEYESSPDQSSNLTEAQQAAEQINALAETGIADLLDEMGLPPDTEVELGVTKFVQLGTITDDAEDWDGIFSAALADDRSISTAAYLGFALXXXXXXXXXXXXXXXXMLCISKKD-SRRRDSGVVRLEKIEESTAINDDGNDEFELPTKRMSEIKEQRRGSSFMNKIPFFGTSSKMKAGETDIEAGTTRR--VAEDHIFAYPPH---SSGGDSGKTQDAADASFPAPLGAPSGNDFFYATQRFADPQVNSPSPRTSTGALAAGXXXXXXXXXXXXXKVAGRRRPATAAPAPAHAGEVSEEWPLPISTTTVGAAGAPGDSGL--------------SSSTISAVSAGSMETKHDVESDARASSLSPAGRAGSSGAINSGDAAGATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDDVPLEDIEQERAEFGALQQEHEAKNKEISARGRMALADFLLGTSDMTSPTSASGRIGGALPTVMEEGSPRGAQAAFSDAGTSSQVAEGSQVGSQVSSSAEGTVIVQVEP--AESV-DSAPSSVVAE 1211
BLAST of mRNA_L-elsbetiae_contig1518.3701.1 vs. uniprot
Match: A0A6H5KWL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL3_9PHAE) HSP 1 Score: 471 bits (1212), Expect = 2.030e-135 Identity = 805/1401 (57.46%), Postives = 893/1401 (63.74%), Query Frame = 1
Query: 28 GAARLLTALAVLLPA---ASAQEAGAG-------VGGLVGEQIAVGFRGRLGGATLRRLQDDDGCTDQTSVGDAEAGIAQYSDPDACVGDAPLVGCNVLGISECRLCLTKGGDASTTLPACPEDVVEIVEEIFPQTAET-------------------PAPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQTPAPSDQ----------------LELPXXXXXXXXXXXXXXXXPSLVDVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGATSSPAATSGPAAVDTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRDLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSSPTGXXXXXXXXXXXXXXXXXXXXXXXAPI----DDPQESLIGTITIVSEEEPACEATATCGEVVEDGLEDSLGRDGTGTVNVTDVTVSSVAXXXXXXTTVAVDGVPSGGERRVLFATAG--------NSLRGXXXXXXXXXXXANETETEIDYVSGPDASSNMTSSQQAAEQINALAETGIADLLEELGLPPDSEVELGTTKYVQIGAVTDVSDFDDSLF-AATATDRSISAGAYWGFAVSLIILVLGACLXXXXXMFCITKKDESNKRNAAGKRLDNLEEKTAIDDDGVGEFDLPKKAGTATHKPQKSGSLLGSIPFFGSVTRQNSVEGDVEAGSTPHSPVPEDHIFAYPPSAMLSGGGGTGKTQDPDDIRSPSSVGAPSGNDFFYATRRFGEPPLNMPSPRVQTAALAXXXXXXXXXXXXXXXXXXXXXXVA------GLSSGEWPSPMSAXXXXXXXXXXXXXXXXXXXXXXXXXXLRSSSTVSAVSAGSMETKHDIGSDLRASSLSPASRAGGXXXXXXXXXXXXXXXXXXXXXXXXXXGKGXXXXXXXXXXXXXXXXXXXXXXXXHKRAEFEALQLEHEAKHKEISARGRMALADFLLGTSDMTSPSSV-GRVGG-LPTVMEEASPTGAGSSSSDAGTSSQFAEGSQVGSQVS----SSAEGTVIVQVGPG-SLDSVADSAQGSSSAESXXXXXXXXXXXXLGLAXXXXXXXXXXXXXXXXXXXFP----STTSVRRTRPMVATDRSESSGSDQSSSAE------------AFPREPPATRVPPALTAAGSRSGXXXXXXLLGSGSDQGHPMSARSSTSTSTSRGSNLVGVSIIS-TPSTDSF-DLSPDSSPRR 3963
GAAR L AL +LLPA A+A A G V GL GE++AVGFRGRL T+RRLQ+++GCT+ TSVGDAEAGIAQY DPDAC+ + PLVGCNVLGIS CRLC+T GG+A+ LP+CPE+V EI+EEIFPQT +T PAP XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A T + XXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX XX XXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX XXXXXXXXXXXXXXXXX IR+LPXXXXXXXXXXXXXXXX XXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXX D+P SLIG+ITI+S+E P C C EVVEDGLE SLGR+GT VNVTDVTV+S A A D G R +LF G N L N+TETEI+Y S PD SSN+T +QQAAEQINALAETGIADLL+E+GLPPD+EVE+G TK+VQ+G +TD ++ DS+F AA A DRSIS AY GFA+ XXXXXM C++KKD S +RNA RL+ +EE TAI+DDG EF+LP K + + ++ S + IPFFGS + + E D+EAG+T V EDHIFAYPP S GG +GKTQD D P+ +GAPSGNDFFYAT+RF +P +N PSPR T ALA XXXXXXXX A G S +WP P+S XXXXXXXXXXXXXXXXX GSMETKHD+ SD RASSLSPA RAG XXXXXX XXX XXXXXXXXXX + AEF ALQ EHEA++KEISARGRMALADFLLGTSDMTSP+S GR+GG LPTVMEE SP GA ++ SDAGTSSQ AEGSQV SSAEGTVIVQV P S+DS S G XXXXXXXX A XXXXXXXXXXXXXXXX S R+ RPM+ATDRSESSGS+QS+ + PR PPAL A+GS S +GS GHP S RSST++S GSNL+GVS+IS TPS DS + SP+SSPRR
Sbjct: 6 GAARFLAALTLLLPASTLAAAAPAPLGTTVAAGAVRGLEGEEVAVGFRGRLAALTVRRLQEEEGCTENTSVGDAEAGIAQYDDPDACLREGPLVGCNVLGISSCRLCVTNGGEAADYLPSCPEEVEEIIEEIFPQTRDTDVPSTAPPATETPLLEGATPAPADVVXXXXXXXXXXXXXXXXXXXXXXTAAPGVVSTXXXXXXXXXXXXXXXXXXXXLSPDATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAXGXXXXXXXXXXXXXXXXXAIVTTAXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAXXTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTVPTLAPGXXXXXXXXXXXXXXXXXGETWAPNLIRELPXXXXXXXXXXXXXXXXSLLAPTVSPSAFTGTPTAAPTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDDEPDGSLIGSITIISDEAPECAGAGNCEEVVEDGLESSLGRNGT--VNVTDVTVTSTA--------AAADA----GRRVLLFVADGDVADDSSRNRLLRGSRQLQEEEAAGNQTETEIEYESSPDQSSNLTEAQQAAEQINALAETGIADLLDEMGLPPDTEVEIGVTKFVQLGTITDDAEDWDSIFSAALADDRSISTAAYLGFALXXXXXXXXXXXXXXXXMLCLSKKD-SRRRNAGVVRLEKIEESTAINDDGDDEFELPTKRMSEIKEQRRGSSFMNRIPFFGSSAKMKAGETDIEAGTTRR--VAEDHIFAYPPH---SSGGDSGKTQDAADASFPAPLGAPSGNDFFYATQRFADPQVNSPSPRTSTGALATGAAAXXXXXXXXVADRRRPATAAAAPAHAGEVSEQWPLPISTTTVGAGGXXXXXXXXXXXXXXXXX--------------GSMETKHDVESDARASSLSPAGRAGSSGAINSGDAAGATTXXXXXXGVTXXXXXXXXXXXXXXXXTEQKRDDVSLEDIEQEHAEFGALQREHEAENKEISARGRMALADFLLGTSDMTSPTSASGRIGGALPTVMEEGSPRGAQAAFSDAGTSSQVAEGSQVXXXXXXXXXSSAEGTVIVQVEPAASVDSAPSSVVGXXXXXXXXXXXXXXIAGLTTEARLGXXXXXXXXXXXXXXXXXXXXXSSNARARQNRPMLATDRSESSGSEQSAPSXXXXXXXXXXXXXTIPR-------PPALLASGSGS----MSYSMGS---SGHPTSTRSSTTSSP--GSNLIGVSLISNTPSADSILEPSPESSPRR 1356 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1518.3701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1518.3701.1 >prot_L-elsbetiae_contig1518.3701.1 ID=prot_L-elsbetiae_contig1518.3701.1|Name=mRNA_L-elsbetiae_contig1518.3701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1357bp MRQPADARRGAARLLTALAVLLPAASAQEAGAGVGGLVGEQIAVGFRGRLback to top mRNA from alignment at L-elsbetiae_contig1518:17579..24568- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1518.3701.1 ID=mRNA_L-elsbetiae_contig1518.3701.1|Name=mRNA_L-elsbetiae_contig1518.3701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6990bp|location=Sequence derived from alignment at L-elsbetiae_contig1518:17579..24568- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1518:17579..24568- >mRNA_L-elsbetiae_contig1518.3701.1 ID=mRNA_L-elsbetiae_contig1518.3701.1|Name=mRNA_L-elsbetiae_contig1518.3701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=8142bp|location=Sequence derived from alignment at L-elsbetiae_contig1518:17579..24568- (Laminarionema elsbetiae ELsaHSoW15)back to top |