mRNA_L-elsbetiae_contig15178.3699.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15178.3699.1
Unique NamemRNA_L-elsbetiae_contig15178.3699.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15178.3699.1 vs. uniprot
Match: D8LHX7_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX7_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 7.740e-16
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 3 
Query:  213 MKSLYRKVDSFDGQTITINGKPSYELGSFLGGGAAGVVYE 332
            MKSLYRKV+SFDGQTITINGKPSYELGSFLGGGAAGVVYE
Sbjct:    1 MKSLYRKVESFDGQTITINGKPSYELGSFLGGGAAGVVYE 40
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BLAST of mRNA_L-elsbetiae_contig15178.3699.1 vs. uniprot
Match: A0A6H5LAQ3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAQ3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 7.830e-16
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 3 
Query:  213 MKSLYRKVDSFDGQTITINGKPSYELGSFLGGGAAGVVYE 332
            MKSLYRKV+SFDGQTITINGKPSYELGSFLGGGAAGVVYE
Sbjct:    1 MKSLYRKVESFDGQTITINGKPSYELGSFLGGGAAGVVYE 40
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BLAST of mRNA_L-elsbetiae_contig15178.3699.1 vs. uniprot
Match: A0A1Z5J6P5_FISSO (Protein kinase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6P5_FISSO)

HSP 1 Score: 62.4 bits (150), Expect = 1.060e-8
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 3 
Query:  228 RKVDSFDGQTITINGKPSYELGSFLGGGAAGVVYE 332
            R+VDS+DGQ +T+ GKP+YELG++LGGG AGVVYE
Sbjct:   41 RRVDSYDGQVLTVEGKPAYELGNYLGGGVAGVVYE 75
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BLAST of mRNA_L-elsbetiae_contig15178.3699.1 vs. uniprot
Match: A0A7S2U8R3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8R3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.510e-8
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  228 RKVDSFDGQTITINGKPSYELGSFLGGGAAGVVYE 332
            R+VDS+DGQ I ++GK +YELG++LGGG AGVVYE
Sbjct:   76 RRVDSYDGQLIVVDGKGAYELGNYLGGGVAGVVYE 110
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BLAST of mRNA_L-elsbetiae_contig15178.3699.1 vs. uniprot
Match: A0A7S2YDN1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YDN1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.840e-8
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  228 RKVDSFDGQTITINGKPSYELGSFLGGGAAGVVYE 332
            R+VD +DGQ IT++ +PSYELGS+LGGG AGVVYE
Sbjct:  176 RRVDFYDGQVITVDDRPSYELGSYLGGGVAGVVYE 210
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BLAST of mRNA_L-elsbetiae_contig15178.3699.1 vs. uniprot
Match: A0A7S4IQR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQR5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.320e-7
Identity = 24/35 (68.57%), Postives = 32/35 (91.43%), Query Frame = 3 
Query:  228 RKVDSFDGQTITINGKPSYELGSFLGGGAAGVVYE 332
            R+VDS+DGQ I+I+ KP+YE+G++LGGG AGVVYE
Sbjct:  192 RRVDSYDGQIISIDNKPTYEVGNYLGGGVAGVVYE 226
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BLAST of mRNA_L-elsbetiae_contig15178.3699.1 vs. uniprot
Match: A0A7S4EHQ6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EHQ6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.260e-7
Identity = 23/35 (65.71%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  228 RKVDSFDGQTITINGKPSYELGSFLGGGAAGVVYE 332
            R+VD++DGQ I ++ KP+YELG++LGGG AGVVYE
Sbjct:  199 RRVDTYDGQVIAVDNKPTYELGNYLGGGVAGVVYE 233
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BLAST of mRNA_L-elsbetiae_contig15178.3699.1 vs. uniprot
Match: A0A6V2BNT9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BNT9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.810e-7
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  228 RKVDSFDGQTITINGKPSYELGSFLGGGAAGVVYE 332
            R+VDS+DGQ I I+GK +YE+G++LGGG AGVVYE
Sbjct:  282 RRVDSYDGQIIEIDGKSTYEIGNYLGGGVAGVVYE 316
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BLAST of mRNA_L-elsbetiae_contig15178.3699.1 vs. uniprot
Match: A0A448Z262_9STRA (Protein kinase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z262_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.040e-7
Identity = 22/35 (62.86%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  228 RKVDSFDGQTITINGKPSYELGSFLGGGAAGVVYE 332
            R+VD++DGQ I ++ KP+YE+G++LGGG AGVVYE
Sbjct:  179 RRVDTYDGQVIVVDNKPTYEIGNYLGGGVAGVVYE 213
[Close]
BLAST of mRNA_L-elsbetiae_contig15178.3699.1 vs. uniprot
Match: A0A7S1ZJC7_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZJC7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.130e-7
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  228 RKVDSFDGQTITINGKPSYELGSFLGGGAAGVVYE 332
            R+VDS+DGQ I I+GK +YE+G++LGGG AGVVYE
Sbjct:  329 RRVDSYDGQIIEIDGKSTYEIGNYLGGGVAGVVYE 363
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15178.3699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LHX7_ECTSI7.740e-1697.50Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6H5LAQ3_9PHAE7.830e-1697.50Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A1Z5J6P5_FISSO1.060e-871.43Protein kinase domain-containing protein n=2 Tax=F... [more]
A0A7S2U8R3_9STRA5.510e-868.57Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2YDN1_9STRA7.840e-871.43Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S4IQR5_9STRA2.320e-768.57Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S4EHQ6_9STRA3.260e-765.71Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A6V2BNT9_9STRA5.810e-768.57Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A448Z262_9STRA6.040e-762.86Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A7S1ZJC7_9STRA6.130e-768.57Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15178contigL-elsbetiae_contig15178:2927..3738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size402
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15178.3699.1prot_L-elsbetiae_contig15178.3699.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15178 3549..3713 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.6683867-UTR-L-elsbetiae_contig15178:2926..29601622815617.6683867-UTR-L-elsbetiae_contig15178:2926..2960Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15178 2927..2960 +
1691682994.0891263-UTR-L-elsbetiae_contig15178:2926..29601691682994.0891263-UTR-L-elsbetiae_contig15178:2926..2960Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15178 2927..2960 +
1622815617.679043-UTR-L-elsbetiae_contig15178:3370..35481622815617.679043-UTR-L-elsbetiae_contig15178:3370..3548Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15178 3371..3548 +
1691682994.097658-UTR-L-elsbetiae_contig15178:3370..35481691682994.097658-UTR-L-elsbetiae_contig15178:3370..3548Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15178 3371..3548 +
1622815617.7045348-UTR-L-elsbetiae_contig15178:3713..37381622815617.7045348-UTR-L-elsbetiae_contig15178:3713..3738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15178 3714..3738 +
1691682994.127041-UTR-L-elsbetiae_contig15178:3713..37381691682994.127041-UTR-L-elsbetiae_contig15178:3713..3738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15178 3714..3738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.6928601-CDS-L-elsbetiae_contig15178:3548..37131622815617.6928601-CDS-L-elsbetiae_contig15178:3548..3713Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15178 3549..3713 +
1691682994.1114473-CDS-L-elsbetiae_contig15178:3548..37131691682994.1114473-CDS-L-elsbetiae_contig15178:3548..3713Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15178 3549..3713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15178.3699.1

>prot_L-elsbetiae_contig15178.3699.1 ID=prot_L-elsbetiae_contig15178.3699.1|Name=mRNA_L-elsbetiae_contig15178.3699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
MKSLYRKVDSFDGQTITINGKPSYELGSFLGGGAAGVVYEVCKHCFVICC
INIC*
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mRNA from alignment at L-elsbetiae_contig15178:2927..3738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15178.3699.1 ID=mRNA_L-elsbetiae_contig15178.3699.1|Name=mRNA_L-elsbetiae_contig15178.3699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=812bp|location=Sequence derived from alignment at L-elsbetiae_contig15178:2927..3738+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCTCCTTCCCTCCCTCTTTCTCCCTCACAAAGGTATGGAGGATGGTGA
TACGGAGTCAATTGTATTTTGTGTCCCTCTGTCCATTTTCTCCAACTCGG
GGTGTGTACGAGAATTGTCGAGCGTATTTTAGCTATCCACCTCGAACGAA
CACCGCCCGCCCCGAAAGTACGTACAACACTGCTGTGACGTTCGCGCTCT
CTTTCTCTTGGAGGGAAGTAAAAGGCGTGGCCTGGCTGGTGTGAGAGGAG
AAACCACTCAGCTCTGAGCCCCTGTTTTGGCGGGCCATTTCATGAAGAAA
AAGCCTTCGTCGCCACTGCGGAGCCTCATTTTATGTGCTACCACGATACA
ATACACTAGAAAACAATAACTGGCGCCACGCACACGAACTTTCACCGCGC
CTCGCCCACGTCGTACTTCAATATTTTAATCCCTGCCACCCCAGGTGCTG
CACCTTTTGAGAGCAGCCCTCTGACAGCGGGGGAAGGGAGTGGCCTAAGC
TTTGGCGTGCGTGATTCGACACAGCAAGAGCGTTGCGGAGAGAGGCGCTG
GGCGCTGTTTGGCCAAATCGGAAGGAAAAAAAGTTGTTTTTTTTTAGCTG
CAACCTGCGAACACACACCAGGATGAAATCGCTGTATCGCAAGGTCGATA
GCTTTGACGGACAGACCATCACTATCAACGGGAAGCCCAGCTATGAGCTT
GGCAGCTTCCTGGGGGGTGGGGCAGCAGGCGTGGTGTACGAGGTGTGTAA
ACACTGCTTTGTTATCTGCTGCATCAATATATGCTAATTTCAAATGAAAA
AAAAAAGGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15178:2927..3738+

>mRNA_L-elsbetiae_contig15178.3699.1 ID=mRNA_L-elsbetiae_contig15178.3699.1|Name=mRNA_L-elsbetiae_contig15178.3699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig15178:2927..3738+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAATCGCTGTATCGCAAGGTCGATAGCTTTGACGGACAGACCATCAC
TATCAACGGGAAGCCCAGCTATGAGCTTGGCAGCTTCCTGGGGGGTGGGG
CAGCAGGCGTGGTGTACGAGGTGTGTAAACACTGCTTTGTTATCTGCTGC
ATCAATATATGCTAAATGAAATCGCTGTATCGCAAGGTCGATAGCTTTGA
CGGACAGACCATCACTATCAACGGGAAGCCCAGCTATGAGCTTGGCAGCT
TCCTGGGGGGTGGGGCAGCAGGCGTGGTGTACGAGGTGTGTAAACACTGC
TTTGTTATCTGCTGCATCAATATATGCTAA
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