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Homology
BLAST of mRNA_L-elsbetiae_contig15089.3645.1 vs. uniprot
Match: D8LJA3_ECTSI (Thioredoxin reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA3_ECTSI) HSP 1 Score: 171 bits (433), Expect = 1.690e-43 Identity = 146/328 (44.51%), Postives = 165/328 (50.30%), Query Frame = 1
Query: 211 AQGPARQRSGSTLVFRVEGSREDPDFVRACGVVKGLEHLYGKDRYLLHPVAEEDADSPEQRPQQQRS-RRRASWIPRWLCGSSRARSTASPSSTATENPRPRAVLCSIDSAPGTAAGGGGRAQTQTRAPQHRESSRRRARRLAAGG-------STADAGGTSVAIGGVEELVEFVRSSVLAGPRPFSFAFHEQSLRIKDAQRRKVGEVEVPVPPLDSPKPPASSDRAALRGXXXXXXXXXXXXXXXXXPASTAGPNAKREEEGCSFSSPNAGGVALSDAATTGGVGISSAERGAERERGRERRYEYDLVVIGGGSGGLACAKEAARMG 1170
A GPA R G LVFRVEG +DP+F RACGVV+GLE LYGK+RYLL PV ED S + Q++ S RRR WIPRW GS+ R + A E AVLCSID AP +TQ + P AAGG S A T VAIGGV+EL+EFVR+SVLAGPRPFSFAFHEQSL I+ A RR XXXXXXXXXXXX P A GV+ S+ Y+YDLVVIGGGSGGLACAKEAAR+G
Sbjct: 49 ATGPAGARRGGALVFRVEGRPDDPEFARACGVVRGLEDLYGKERYLLQPVPVEDGGSSHDQEQRRASPRRRRPWIPRWFGGSAGRRKQSPQGGPAGETAPRSAVLCSIDRAPADD-------KTQAQGP-------------AAGGHLSAAEESPAAVANTRVAIGGVDELLEFVRTSVLAGPRPFSFAFHEQSLGIQAAHRRXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXLKHGAPGGAPXXXXXXXXXXXXXXXXXASGVSPSE-------------------------YDYDLVVIGGGSGGLACAKEAARLG 328
BLAST of mRNA_L-elsbetiae_contig15089.3645.1 vs. uniprot
Match: A0A7R9DMY2_TIMPO (Hypothetical protein (Fragment) n=3 Tax=Timema TaxID=61471 RepID=A0A7R9DMY2_TIMPO) HSP 1 Score: 50.8 bits (120), Expect = 9.340e-5 Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 1
Query: 1096 YEYDLVVIGGGSGGLACAKEAARMG 1170
YEYDLVVIGGGSGGLACAKEA ++G
Sbjct: 12 YEYDLVVIGGGSGGLACAKEAVQLG 36
BLAST of mRNA_L-elsbetiae_contig15089.3645.1 vs. uniprot
Match: A0A6A0A047_HAELA (Thioredoxin reductase TR1 n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A047_HAELA) HSP 1 Score: 51.6 bits (122), Expect = 9.550e-5 Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 1
Query: 1087 ERRYEYDLVVIGGGSGGLACAKEAARMG 1170
E Y+YDL+VIGGGSGGLACAKEAA +G
Sbjct: 38 ETSYDYDLIVIGGGSGGLACAKEAAELG 65
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 177.6 |
Seed ortholog evalue | 1.1e-41 |
Seed eggNOG ortholog | 2880.D8LJA3 |
Preferred name | TXNRD1 |
KEGG rclass | RC02518,RC02873 |
KEGG ko | ko:K22182 |
KEGG Reaction | R03596,R09372 |
KEGG Pathway | ko00450,ko05200,ko05225,map00450,map05200,map05225 |
Hectar predicted targeting category | signal peptide |
GOs | GO:0000003,GO:0000302,GO:0000305,GO:0001650,GO:0001704,GO:0001707,GO:0001887,GO:0001890,GO:0003006,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006082,GO:0006139,GO:0006518,GO:0006520,GO:0006575,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006749,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0007498,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009069,GO:0009117,GO:0009611,GO:0009628,GO:0009636,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0010269,GO:0010941,GO:0010942,GO:0012505,GO:0015036,GO:0015949,GO:0016043,GO:0016174,GO:0016209,GO:0016259,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016999,GO:0017001,GO:0017144,GO:0018996,GO:0019216,GO:0019222,GO:0019362,GO:0019637,GO:0019725,GO:0019752,GO:0022404,GO:0022414,GO:0022607,GO:0023052,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0033797,GO:0034599,GO:0034641,GO:0036295,GO:0036296,GO:0036477,GO:0042221,GO:0042303,GO:0042395,GO:0042493,GO:0042537,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0042803,GO:0043025,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045340,GO:0045454,GO:0046483,GO:0046496,GO:0046688,GO:0046872,GO:0046914,GO:0046983,GO:0048332,GO:0048513,GO:0048518,GO:0048522,GO:0048598,GO:0048608,GO:0048646,GO:0048678,GO:0048729,GO:0048731,GO:0048856,GO:0050664,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051187,GO:0051259,GO:0051262,GO:0051716,GO:0055086,GO:0055093,GO:0055114,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070276,GO:0070482,GO:0070887,GO:0070995,GO:0071241,GO:0071248,GO:0071280,GO:0071453,GO:0071455,GO:0071704,GO:0071840,GO:0072524,GO:0072593,GO:0080090,GO:0097237,GO:0097458,GO:0098623,GO:0098625,GO:0098626,GO:0098754,GO:0098869,GO:1901360,GO:1901564,GO:1901605,GO:1901700,GO:1990748 |
EggNOG free text desc. | thioredoxin-disulfide reductase activity |
EggNOG OGs | COG1249@1,KOG4716@2759 |
EC | 1.8.1.9 |
COG Functional cat. | C |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko01000 |
Exons | 4 |
Model size | 1171 |
Cds size | 1125 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815612.5448532-CDS-L-elsbetiae_contig15089:744..1141 | 1622815612.5448532-CDS-L-elsbetiae_contig15089:744..1141 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15089 745..1141 - |
1691682991.042264-CDS-L-elsbetiae_contig15089:744..1141 | 1691682991.042264-CDS-L-elsbetiae_contig15089:744..1141 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15089 745..1141 - |
1622815612.5566938-CDS-L-elsbetiae_contig15089:1623..2039 | 1622815612.5566938-CDS-L-elsbetiae_contig15089:1623..2039 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15089 1624..2039 - |
1691682991.0546684-CDS-L-elsbetiae_contig15089:1623..2039 | 1691682991.0546684-CDS-L-elsbetiae_contig15089:1623..2039 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15089 1624..2039 - |
1622815612.5690835-CDS-L-elsbetiae_contig15089:2367..2679 | 1622815612.5690835-CDS-L-elsbetiae_contig15089:2367..2679 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15089 2368..2679 - |
1691682991.0654225-CDS-L-elsbetiae_contig15089:2367..2679 | 1691682991.0654225-CDS-L-elsbetiae_contig15089:2367..2679 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15089 2368..2679 - |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815612.5838327-UTR-L-elsbetiae_contig15089:2679..2683 | 1622815612.5838327-UTR-L-elsbetiae_contig15089:2679..2683 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15089 2680..2683 - |
1691682991.0736785-UTR-L-elsbetiae_contig15089:2679..2683 | 1691682991.0736785-UTR-L-elsbetiae_contig15089:2679..2683 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15089 2680..2683 - |
1622815612.5978642-UTR-L-elsbetiae_contig15089:3365..3406 | 1622815612.5978642-UTR-L-elsbetiae_contig15089:3365..3406 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15089 3366..3406 - |
1691682991.0816584-UTR-L-elsbetiae_contig15089:3365..3406 | 1691682991.0816584-UTR-L-elsbetiae_contig15089:3365..3406 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15089 3366..3406 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig15089.3645.1 >prot_L-elsbetiae_contig15089.3645.1 ID=prot_L-elsbetiae_contig15089.3645.1|Name=mRNA_L-elsbetiae_contig15089.3645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=375bp
MPPPRRAQRRPPLAVARFNLCGIAAAVAAAAGIVAVAGTGPISVDAATAE TTTSSAQGPARQRSGSTLVFRVEGSREDPDFVRACGVVKGLEHLYGKDRY LLHPVAEEDADSPEQRPQQQRSRRRASWIPRWLCGSSRARSTASPSSTAT ENPRPRAVLCSIDSAPGTAAGGGGRAQTQTRAPQHRESSRRRARRLAAGG STADAGGTSVAIGGVEELVEFVRSSVLAGPRPFSFAFHEQSLRIKDAQRR KVGEVEVPVPPLDSPKPPASSDRAALRGSSSSSGSSSNNNGGATTPASTA GPNAKREEEGCSFSSPNAGGVALSDAATTGGVGISSAERGAERERGRERR YEYDLVVIGGGSGGLACAKEAARMG back to topmRNA from alignment at L-elsbetiae_contig15089:745..3406- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig15089.3645.1 ID=mRNA_L-elsbetiae_contig15089.3645.1|Name=mRNA_L-elsbetiae_contig15089.3645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2662bp|location=Sequence derived from alignment at L-elsbetiae_contig15089:745..3406- (Laminarionema elsbetiae ELsaHSoW15) CCCTGAGCGCGCCTGCTGCGGGCTGGAGCAGGGCACAAGTGGTGAGAGAT
GATTCGTATGTGATAGCAGACTTGTCTGTTTGGTCTCTCTTCAAACAGCC
CTTCTTCTCTTTCCTAACCCGACACATCAACATCCAAACCTTCACCTCTC
TCTTGCCTCAGATGGCCAAGATGCACACATTTAGATAATAGATAGATAGT
AGTACAAGAACGCGAGCAAGTAAACACGTTTCATCTTGCCCCGCTTTTGA
ACGAAGGGATACAGTATGATGGGCATGGAGATGAGATGTCGTGAAATACT
GCAACGTACAAGGAGTATTATGTATTATGTACTGCGTACAACACGTGGCG
GTCTCCGAGCGAGTGCACAATGCTTGTGCAGGCTTGACAACCGAATTTCC
TGCTGCCTTTGATGGTGCTCTCTGTACCTCATACTCTAAATAGCCTAAGC
CCGACCTGGTGTTCTTTGTTCGGGCTCCGCCAACTGCTGGGGGTACACAC
GTGCCGAGAGTATTGTCCCGCGAATGTGCGTCCCGCTGTACAGGCATGGA
TTATCTGTGCTTCTTCCAACAGACAGCCTACGGCGAAGGGCGCGCAGTGA
AAAATTCTTTGTCTAAATACAGTGTGAATGAAATCCCACCGCACTTCCCA
CTTGTTACCTTGAAACATTTTCGTTTGTGTACCCTTAACCCCCCCAATCC
ATGGCAACGGCACGGGCCCACAGAGCAATGCCACCGCCACGCCGAGCACA
AAGGCGTCCACCACTTGCGGTCGCCCGATTCAACCTTTGCGGGATAGCAG
CAGCGGTGGCAGCAGCAGCAGGAATCGTTGCAGTCGCTGGGACAGGTCCT
ATCTCGGTCGATGCTGCTACTGCGGAAACCACGACTTCTTCTGCGCAGGG
TCCTGCAAGGCAAAGGTCGGGGTCAACGTTGGTGTTCCGGGTGGAAGGGT
CCAGAGAAGACCCCGATTTTGTGCGGGCGTGCGGGGTGGTGAAGGGTCTG
GAACACCTCTACGGGAAGGACCGGTACCTGCTGCACCCGGTGAGGGGTTT
CAAACGCACCGGAGTATCTATACTACCACCTGGATTAGATGCCCTGCGGT
TGTGTATTTATCACCTCCTCGTTAACACCCGACGACTGTCAAATACAGCA
GTACATACCGAGTGACGTTTATCCCGATTCGAAGAGTCGGGGGGTCGCGC
CGAGCCGACCGTAGCGTGAGCACAACCGCGAGCAGAGGCGTAAGCACAAC
CGCGAGTAGAGGCGTGAGCAGTACATAGCAGGAGCAGTAGCCAGAGTGCG
GAAGCGGCCAAACCATAAACAGGCACCGCTGCTACGACTCGCTCTGCTGC
TGCTGCCGCTGCTGCAGGTGGCGGAAGAAGACGCCGACTCCCCGGAACAA
CGACCACAACAACAACGGTCGAGAAGAAGGGCGTCGTGGATCCCGCGCTG
GCTCTGCGGCTCCTCGCGAGCGCGGTCTACCGCTTCGCCTTCCTCGACCG
CCACCGAAAACCCTCGCCCACGGGCGGTCCTGTGTAGCATCGATTCTGCG
CCCGGGACAGCAGCAGGAGGAGGAGGTCGGGCGCAGACACAGACACGTGC
ACCGCAGCACCGAGAATCGTCTCGGAGGCGGGCGAGGCGCCTAGCCGCCG
GGGGTTCGACCGCTGACGCTGGGGGCACGAGCGTCGCGATCGGAGGGGTG
GAAGAGCTGGTGGAGTTCGTCCGCAGCAGCGTGCTGGCGGGGCCGCGGCC
ATTTTCCTTCGCGTTTCACGAGCAGTCTCTTCGGTGAGCTACAGTAGTAC
GGTGTACAATATCCTCGGCGTAGTTCTATATAGGCTTGCAACAGCGGGGG
GAGGAGGGAGAGGGGGCGTTGGCGTGGAAGTGTGGGATCTGGTGTGGATT
TTGTATGGATGGATGAGATGGTGGTGAGGTTAGGTTGGGTTCGCATGGAA
GGGTCGAAAGTGTTTCCAATGGTGCGGAGTCTGCCCGCCAAAAAAAAATA
CCGGGGGATCAAGTTTTCGGCGTCTCCGGGAAGCTTTTGTCTGCTGTCCG
CTTCGTCCGGGGGCCAAGTCAAAACCGCGAGGGGGGCGCTTTTGCGGGCT
TCATTGCCGGCTGTAGTCCCCCCCGGCTGCACGGTCGTTCGCGTGCACCC
ACGCCTTATGTCTGTTTTGGAGTTTTAGAAGAGTGGCCGCCTGTCTGTCC
GTGTGTGTGCTTGCTGCTCTCCCTCGCGGACCCGACCTGATCTCGCGCCT
TATTCCGACTGCCAGGATAAAGGATGCCCAGCGCAGAAAAGTCGGAGAGG
TAGAGGTACCCGTGCCTCCCCTGGACAGCCCGAAGCCCCCCGCCTCGTCG
GACCGGGCCGCCCTTCGCGGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAA
CAACAACGGTGGTGCTACCACCCCCGCCTCTACCGCCGGACCAAACGCCA
AACGCGAGGAGGAAGGGTGTTCTTTCTCGAGCCCGAACGCTGGTGGAGTG
GCCTTATCCGATGCCGCGACGACCGGCGGCGTCGGTATCTCGTCGGCCGA
AAGGGGGGCCGAGAGGGAGCGCGGGCGCGAGCGCCGGTATGAGTACGACT
TGGTGGTGATCGGGGGAGGGTCCGGGGGCCTGGCGTGCGCGAAGGAGGCG
GCGAGGATGGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig15089:745..3406- >mRNA_L-elsbetiae_contig15089.3645.1 ID=mRNA_L-elsbetiae_contig15089.3645.1|Name=mRNA_L-elsbetiae_contig15089.3645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2250bp|location=Sequence derived from alignment at L-elsbetiae_contig15089:745..3406- (Laminarionema elsbetiae ELsaHSoW15) ATGCCACCGCCACGCCGAGCACAAAGGCGTCCACCACTTGCGGTCGCCCG ATTCAACCTTTGCGGGATAGCAGCAGCGGTGGCAGCAGCAGCAGGAATCG TTGCAGTCGCTGGGACAGGTCCTATCTCGGTCGATGCTGCTACTGCGGAA ACCACGACTTCTTCTGCGCAGGGTCCTGCAAGGCAAAGGTCGGGGTCAAC GTTGGTGTTCCGGGTGGAAGGGTCCAGAGAAGACCCCGATTTTGTGCGGG CGTGCGGGGTGGTGAAGGGTCTGGAACACCTCTACGGGAAGGACCGGTAC CTGCTGCACCCGATGCCACCGCCACGCCGAGCACAAAGGCGTCCACCACT TGCGGTCGCCCGATTCAACCTTTGCGGGATAGCAGCAGCGGTGGCAGCAG CAGCAGGAATCGTTGCAGTCGCTGGGACAGGTCCTATCTCGGTCGATGCT GCTACTGCGGAAACCACGACTTCTTCTGCGCAGGGTCCTGCAAGGCAAAG GTCGGGGTCAACGTTGGTGTTCCGGGTGGAAGGGTCCAGAGAAGACCCCG ATTTTGTGCGGGCGTGCGGGGTGGTGAAGGGTCTGGAACACCTCTACGGG AAGGACCGGTACCTGCTGCACCCGGTGGCGGAAGAAGACGCCGACTCCCC GGAACAACGACCACAACAACAACGGTCGAGAAGAAGGGCGTCGTGGATCC CGCGCTGGCTCTGCGGCTCCTCGCGAGCGCGGTCTACCGCTTCGCCTTCC TCGACCGCCACCGAAAACCCTCGCCCACGGGCGGTCCTGTGTAGCATCGA TTCTGCGCCCGGGACAGCAGCAGGAGGAGGAGGTCGGGCGCAGACACAGA CACGTGCACCGCAGCACCGAGAATCGTCTCGGAGGCGGGCGAGGCGCCTA GCCGCCGGGGGTTCGACCGCTGACGCTGGGGGCACGAGCGTCGCGATCGG AGGGGTGGAAGAGCTGGTGGAGTTCGTCCGCAGCAGCGTGCTGGCGGGGC CGCGGCCATTTTCCTTCGCGTTTCACGAGCAGTCTCTTCGGTGGCGGAAG AAGACGCCGACTCCCCGGAACAACGACCACAACAACAACGGTCGAGAAGA AGGGCGTCGTGGATCCCGCGCTGGCTCTGCGGCTCCTCGCGAGCGCGGTC TACCGCTTCGCCTTCCTCGACCGCCACCGAAAACCCTCGCCCACGGGCGG TCCTGTGTAGCATCGATTCTGCGCCCGGGACAGCAGCAGGAGGAGGAGGT CGGGCGCAGACACAGACACGTGCACCGCAGCACCGAGAATCGTCTCGGAG GCGGGCGAGGCGCCTAGCCGCCGGGGGTTCGACCGCTGACGCTGGGGGCA CGAGCGTCGCGATCGGAGGGGTGGAAGAGCTGGTGGAGTTCGTCCGCAGC AGCGTGCTGGCGGGGCCGCGGCCATTTTCCTTCGCGTTTCACGAGCAGTC TCTTCGGATAAAGGATGCCCAGCGCAGAAAAGTCGGAGAGGTAGAGGTAC CCGTGCCTCCCCTGGACAGCCCGAAGCCCCCCGCCTCGTCGGACCGGGCC GCCCTTCGCGGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAACAACAACGG TGGTGCTACCACCCCCGCCTCTACCGCCGGACCAAACGCCAAACGCGAGG AGGAAGGGTGTTCTTTCTCGAGCCCGAACGCTGGTGGAGTGGCCTTATCC GATGCCGCGACGACCGGCGGCGTCGGTATCTCGTCGGCCGAAAGGGGGGC CGAGAGGGAGCGCGGGCGCGAGCGCCGGTATGAGTACGACTTGGTGGTGA TCGGGGGAGGGTCCGGGGGCCTGGCGTGCGCGAAGGAGGCGGCGAGGATG GGGGATAAAGGATGCCCAGCGCAGAAAAGTCGGAGAGGTAGAGGTACCCG TGCCTCCCCTGGACAGCCCGAAGCCCCCCGCCTCGTCGGACCGGGCCGCC CTTCGCGGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAACAACAACGGTGG TGCTACCACCCCCGCCTCTACCGCCGGACCAAACGCCAAACGCGAGGAGG AAGGGTGTTCTTTCTCGAGCCCGAACGCTGGTGGAGTGGCCTTATCCGAT GCCGCGACGACCGGCGGCGTCGGTATCTCGTCGGCCGAAAGGGGGGCCGA GAGGGAGCGCGGGCGCGAGCGCCGGTATGAGTACGACTTGGTGGTGATCG GGGGAGGGTCCGGGGGCCTGGCGTGCGCGAAGGAGGCGGCGAGGATGGGG back to top
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