mRNA_L-elsbetiae_contig14869.3515.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14869.3515.1
Unique NamemRNA_L-elsbetiae_contig14869.3515.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14869.3515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14869contigL-elsbetiae_contig14869:344..3745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size556
Cds size543
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14869.3515.1prot_L-elsbetiae_contig14869.3515.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14869 344..3733 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.9993727-CDS-L-elsbetiae_contig14869:343..7301622815599.9993727-CDS-L-elsbetiae_contig14869:343..730Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14869 344..730 -
1691682983.2798092-CDS-L-elsbetiae_contig14869:343..7301691682983.2798092-CDS-L-elsbetiae_contig14869:343..730Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14869 344..730 -
1622815600.0133953-CDS-L-elsbetiae_contig14869:1813..19061622815600.0133953-CDS-L-elsbetiae_contig14869:1813..1906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14869 1814..1906 -
1691682983.2888775-CDS-L-elsbetiae_contig14869:1813..19061691682983.2888775-CDS-L-elsbetiae_contig14869:1813..1906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14869 1814..1906 -
1622815600.028005-CDS-L-elsbetiae_contig14869:3670..37331622815600.028005-CDS-L-elsbetiae_contig14869:3670..3733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14869 3671..3733 -
1691682983.2976434-CDS-L-elsbetiae_contig14869:3670..37331691682983.2976434-CDS-L-elsbetiae_contig14869:3670..3733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14869 3671..3733 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.0404408-UTR-L-elsbetiae_contig14869:3733..37451622815600.0404408-UTR-L-elsbetiae_contig14869:3733..3745Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14869 3734..3745 -
1691682983.3073158-UTR-L-elsbetiae_contig14869:3733..37451691682983.3073158-UTR-L-elsbetiae_contig14869:3733..3745Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14869 3734..3745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14869.3515.1

>prot_L-elsbetiae_contig14869.3515.1 ID=prot_L-elsbetiae_contig14869.3515.1|Name=mRNA_L-elsbetiae_contig14869.3515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MFDKDVEALAATAQPKLDVPNLLATGAAEGSGFPVAGLMMKAFKGFAGGK
KEGGASPKASTKKKEKKKTDHEGRGSRKSRRWSRKTAKRRGGGKRKATAA
ASGDDGKRDGSENRGGTAGEKHPHGVEKRGIEVDGRDGAAPLVVDDSGSS
GGGSGGDGGSGGGGTPQSEAGNSAAEGREAG
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mRNA from alignment at L-elsbetiae_contig14869:344..3745-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14869.3515.1 ID=mRNA_L-elsbetiae_contig14869.3515.1|Name=mRNA_L-elsbetiae_contig14869.3515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3402bp|location=Sequence derived from alignment at L-elsbetiae_contig14869:344..3745- (Laminarionema elsbetiae ELsaHSoW15)
AGGTTAAACGACATGTTCGACAAGGACGTGGAAGCCCTCGCCGCGACGGC
ACAGCCCAAGCTCGACGTGCCCAACGTGAGTTAATCCCGGCACCTCAAGC
AAATATCTCCTGTCTAAAGGCCTTCCTGCAATGGATGGAGCCCCCAATTC
TCGAAGAGAGCTGTGCTGGGGGCAGCCGGGGCGGGGGGGGGGGGGGATTT
ATCTAGGAAATAGAGTGAAAAATCCCCCACAGACACTTTTTTTCAGAGAG
GGGGCCCTGCTGCAGTTAGCCAATATAGGAAATACTAGGGCAGGGGTTCC
GTAACCCAGCTCTAACGCTAACCCTAACCCCAAACCGACCCCCCGTTAGC
CGTTCCCAAACTTTTGTCCCATATGGTTTCTTCCAGTAGTAGCCAAACCT
GCGAAGAAGGCTTCTGAGCTTGGCAAGCCGTCTTTTTTTTTTTTTTTTTT
AGTATGTATGTATGTATGTATATGTATGTTGTCTTCACAGTAAAAATCGT
TCCGATCTCTCCATCCAGTACTTCTCAATGTCCGTACTAACCCAACACTT
GATGGGGTCAATTCCCGTGGTCACAGGCTAACTTAATACCCAAGAAAAGG
TACACGAAAAATAAAATGGACCCGAAGGTCCATGAGCCAACCAACCATGT
AATTCACCGCACAGAATCAAATAGAATACATGCAGCTATTTATAGCTGCG
TGGGCGTGTGTCGCGGTCTTGCTAGCCACATCGTGTATGTACCTGCACAG
CACAAAGCCGTTTTCGGCTTTCAGTGCAACGGTGCTCCTCGACGTTATCC
GGGGTGTCTGGTAATTCGGGGTGTCCGGTAATTGGATTTAGTTAAAGGTG
GCGCACCGGCACCTCGTGATTTTTTTTTATGTAACTTTTTACATCTATTG
CCAGGGCTATAGATAAGAGGCTGCTTGCCACGAAGAACATTCGTTTTGCC
AGAGTACTGACCCGTGATCGCACAGAAGGGGTTCCTCTCCCTGAGTCCCC
CACACCCCCCCACCTTTTGCGGTTGCTTGCCTGAGATTTTTTATCGCGAG
AAGGGCCCAGCCATCCCTTTCCCTCGTCCACGGTGAGGTCGTGATGCTTT
TATATATGTAAAACACCAAACCAGTTGCAACAAGTACTGTTTTGGCGGCT
GGGGGGGCTGTAGACGCGCACGCTGCTTGGGTTTTGAGAAAAAGACGTTT
TCCACGAGGGTCCCCAAAAAAAGCTCCCCAAGAGATTAGAGAGTTCCTCC
CCCACCCTCCTCTCAACGACGGCTCCCCTCTTTCGAATAACTCGACTGAG
CATGCAGTGGACGGACGGTCCCCCCTTGCAGCAAGGAGAGTGCCAGTCCA
GTGCCGGAAGGGGGTGGGTGGCGTTGGAAAGACGCAGTCGCGTACCGTCC
GAAAATGTTTCATTTGGTGCTGGCACCCTCTTCGTCTCTTCGTTACGGAG
TAATCGAGCTTTGAAAAACTGTCCAGGGGTGGTGGGGGGTGGTATCTTGT
GACATCTACGGTAAGCTGACTCGCGACCGGGCGTCGCCCATCTCAGACGA
AGCCATTGTGTCTGGTCCCTCTGTGGTTGTCTTCCCTTGCTTCTCTACCC
ATGGCCTCAGTCAGATTCCCGCGTCATTTTTTTCTCTCTCAGAAAAAAAA
AAAAAATGCAAACAGTATATTTTCTTCTCATGAACTAATTTAGTATGCAA
AACATATTTCAGTTTTCCCCTTGTTGCCTCCATCCTGAAAGCACACACTT
TTTCGTTCTGTTTATTTTATGTAGGTACACACTTTTCTGTGTGGCTCAAT
TTCCCCTTGTTCTCTCCACTCTTGAAACACACAACACAGCTCTTGGCGAC
GGGAGCCGCGGAGGGCTCTGGCTTCCCCGTGGCCGGCCTGATGATGAAGG
CCTTCAAGGGGTTTGCCGGCGGCAAGAAGGAGGTGATACTGGCGCGGACG
ACCGGCTCTCTTTGCATCACGTCGGGTTGCTTGACCCGGGCATTGGTGGT
GATGGTTGTCGACGACTTGTTCCTGCTGCTTGCCGCCGCCGCCGTCGCCG
CCGCCGCAACTGCTGGCTGTTTTTTTGTTAATCTTCACGTTCATTTCCAG
TGCTTGACGGGGAGCTCCTCGCCACGAGGGCATCTTGCCAGGGTACTGAA
CCGTGGTCACACAGAAGGGTTCCTTCTCCCCCGAGGCCGGCCCCCAATCG
CCCCTTCTGCGGGGCTTGCCTAATAGATGGCCCAGGGTGTGTGGGTTACC
CTAGGCTGCTTCCTTAGTTTGCCCCTTCTGCGGGGCTTGCCTAAGATGTT
TTGTCGCGAGAAGGGTTCAGCCGCCCCTTTCCCTCGTCGACGGCGAGGTC
GAAGTCTGTGTACACACGCTACATACATAAGCGCTAGCCACCGACAGGGA
CGGAAGCGAGAGAAAAAAACTCTTTTCGCAAGAAAAAGTCGCTTCCGCCG
GGTTTCGAACCCATGACCTGCCTGCTAGTTGGTGTTCGGGGGTGCCGATT
GTTTAGACCCCCGGGGCGGCCGGCAGGGGGTAATGAATTACTCCGGTGTC
GCCGGCAGCCGGCAGCGTTTCTCTCCTTGAATGCCCTGGCCGGTAGAAGG
ACAAGCTCGGAATGATCTTCTCTTTTATTTGTTTCTCTTCGTCGTGCGGA
AGACCTGTTTGTGATCCAAGGCCGTGTCTGCGCAAGAACCACCGATCTGT
TTTTGGTGACGTCACTTTTTTGCGGGCACCTTGGCTTGGTCGGGGGGGGG
GGGGGGGGGGGGCCGGGTAGAAAACATTGTGTTTGGGGGGGGGGGGGACC
CACCCCCAGGGGTTTTTGTGGGGTGGTGTGGTGGGTGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGCTACGTAT
GAATCACTGTGTTGTAGGGACGTAGGTAACCGAACTCACGGGTTATTCGC
TGCGTGTGTGTGTGTGTGTGTATGTGTGTGTCAAATGTCGAACTGCTTAC
TACTCTCACGGGCAGGGCGGTGCCTCCCCCAAAGCTAGCACGAAGAAGAA
GGAGAAGAAGAAGACGGACCACGAGGGGAGAGGGTCGAGAAAGAGCAGGC
GCTGGAGCAGGAAGACAGCGAAGCGGCGAGGCGGAGGCAAGAGGAAGGCG
ACGGCGGCGGCCTCGGGAGACGACGGCAAGCGCGACGGCTCCGAGAACCG
CGGCGGCACCGCGGGCGAGAAGCACCCGCACGGGGTCGAGAAACGCGGCA
TCGAAGTCGACGGCCGTGACGGGGCCGCTCCTCTTGTGGTAGACGACAGC
GGCAGCAGCGGTGGCGGCAGCGGCGGCGATGGCGGCAGCGGCGGCGGCGG
CACCCCCCAGAGTGAGGCTGGAAACTCGGCTGCGGAAGGGCGGGAGGCTG
GC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14869:344..3745-

>mRNA_L-elsbetiae_contig14869.3515.1 ID=mRNA_L-elsbetiae_contig14869.3515.1|Name=mRNA_L-elsbetiae_contig14869.3515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig14869:344..3745- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGACAAGGACGTGGAAGCCCTCGCCGCGACGGCACAGCCCAAGCT
CGACGTGCCCAACATGTTCGACAAGGACGTGGAAGCCCTCGCCGCGACGG
CACAGCCCAAGCTCGACGTGCCCAACCTCTTGGCGACGGGAGCCGCGGAG
GGCTCTGGCTTCCCCGTGGCCGGCCTGATGATGAAGGCCTTCAAGGGGTT
TGCCGGCGGCAAGAAGGAGCTCTTGGCGACGGGAGCCGCGGAGGGCTCTG
GCTTCCCCGTGGCCGGCCTGATGATGAAGGCCTTCAAGGGGTTTGCCGGC
GGCAAGAAGGAGGGCGGTGCCTCCCCCAAAGCTAGCACGAAGAAGAAGGA
GAAGAAGAAGACGGACCACGAGGGGAGAGGGTCGAGAAAGAGCAGGCGCT
GGAGCAGGAAGACAGCGAAGCGGCGAGGCGGAGGCAAGAGGAAGGCGACG
GCGGCGGCCTCGGGAGACGACGGCAAGCGCGACGGCTCCGAGAACCGCGG
CGGCACCGCGGGCGAGAAGCACCCGCACGGGGTCGAGAAACGCGGCATCG
AAGTCGACGGCCGTGACGGGGCCGCTCCTCTTGTGGTAGACGACAGCGGC
AGCAGCGGTGGCGGCAGCGGCGGCGATGGCGGCAGCGGCGGCGGCGGCAC
CCCCCAGAGTGAGGCTGGAAACTCGGCTGCGGAAGGGCGGGAGGCTGGCG
GCGGTGCCTCCCCCAAAGCTAGCACGAAGAAGAAGGAGAAGAAGAAGACG
GACCACGAGGGGAGAGGGTCGAGAAAGAGCAGGCGCTGGAGCAGGAAGAC
AGCGAAGCGGCGAGGCGGAGGCAAGAGGAAGGCGACGGCGGCGGCCTCGG
GAGACGACGGCAAGCGCGACGGCTCCGAGAACCGCGGCGGCACCGCGGGC
GAGAAGCACCCGCACGGGGTCGAGAAACGCGGCATCGAAGTCGACGGCCG
TGACGGGGCCGCTCCTCTTGTGGTAGACGACAGCGGCAGCAGCGGTGGCG
GCAGCGGCGGCGATGGCGGCAGCGGCGGCGGCGGCACCCCCCAGAGTGAG
GCTGGAAACTCGGCTGCGGAAGGGCGGGAGGCTGGC
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