mRNA_L-elsbetiae_contig14857.3509.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14857.3509.1
Unique NamemRNA_L-elsbetiae_contig14857.3509.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14857.3509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14857contigL-elsbetiae_contig14857:1844..3151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size277
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14857.3509.1prot_L-elsbetiae_contig14857.3509.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14857 1844..3151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.6403372-CDS-L-elsbetiae_contig14857:1843..19441622815599.6403372-CDS-L-elsbetiae_contig14857:1843..1944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14857 1844..1944 +
1691682983.1342626-CDS-L-elsbetiae_contig14857:1843..19441691682983.1342626-CDS-L-elsbetiae_contig14857:1843..1944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14857 1844..1944 +
1622815599.6536548-CDS-L-elsbetiae_contig14857:2546..26401622815599.6536548-CDS-L-elsbetiae_contig14857:2546..2640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14857 2547..2640 +
1691682983.143362-CDS-L-elsbetiae_contig14857:2546..26401691682983.143362-CDS-L-elsbetiae_contig14857:2546..2640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14857 2547..2640 +
1622815599.666706-CDS-L-elsbetiae_contig14857:3070..31511622815599.666706-CDS-L-elsbetiae_contig14857:3070..3151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14857 3071..3151 +
1691682983.153543-CDS-L-elsbetiae_contig14857:3070..31511691682983.153543-CDS-L-elsbetiae_contig14857:3070..3151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14857 3071..3151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14857.3509.1

>prot_L-elsbetiae_contig14857.3509.1 ID=prot_L-elsbetiae_contig14857.3509.1|Name=mRNA_L-elsbetiae_contig14857.3509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MRVSLSPWTGSNEDVTARREFESSGIQKQCCGIRCLPVCLTLNVRKTVCR
GRSGPPRKTMSIASEVTTESVPLATSQLGREDLLPTICYLSL
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mRNA from alignment at L-elsbetiae_contig14857:1844..3151+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14857.3509.1 ID=mRNA_L-elsbetiae_contig14857.3509.1|Name=mRNA_L-elsbetiae_contig14857.3509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig14857:1844..3151+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGTATCGTTATCCCCATGGACAGGAAGCAACGAAGACGTGACGGC
AAGAAGAGAGTTTGAGAGTTCAGGGATTCAGAAACAATGCTGTGGAATCA
GGCAACATCCGCCCGTGCGATAACATGTTTGAATTTCAAAAACCTGTGCC
CAGGACAGAAACAGAACGAGAACAACATACATACCGCTGCATTTATTACC
TCAAATTTACCCAGGTCTTCGTCCGGGTACGGTAAATACGCAGATGTATC
GTTCAGAAAATAAAATAAAAAACGGTGTGCTGTTGTAGAAGGGGTACATA
TGTTATCCTTTGTCACCCCTATAACTTGATCTCTCAGAGTATTATTGTTT
CCGGCCACAAATTTCGTGCTATAATAAAATATTTTACGGTGTGGTGCTGT
GGAGATTTTGTCTGGGGATGTCTCATCTATCTCATGTACTTGTCTTGTCT
CATGTCACCCATGGTTCATCAGAAACAGCTCGGAGAGGTGATTCGTGACC
ATACGCCAGGGACATGTTGGGTTTGCGCGCAACGGTTCAACTCTTTCCGT
CCCCCCCTGAGCTGAACTATTTTCAAATTTGGATTGCTGCTGCAGGCATA
AACGTTGACAAGCTCACATTCAGCTGGCAGGGGGTCGCATCGCTTGGGTC
TTCGGTGCCGCTCGTTGATGTTGCTGACTGAAAACCCTGCCTCACTCCGC
CAGGTGTCTACCCGTCTGCCTCACCCTCAACGTTCGTAAGACCGTGTGTC
GTGGACGGTCAGGACCGCCGAGGAAAACGATGTCGATAGCATCTGAGGTA
AGAACGCATCGTACGCGAGTTCGCACGAACAGGGGTAAAGCTACCAGATT
AGAGACGGCCAAACGCCAGGTTTGATACCAGAACGACCTTCGTACCACCC
TCTCGCGATTGGCTGAACCAGATACTCCAACAACAGAATGGTTCGACTGA
TGAAAATGCTCACCTGTTGTTGCTGATAACCGGTCGCCACCAGTCCTGGA
ACGCGGCGCGCTGGCGCGGCATCTCTGGTTGTTCGGCGGCAGGCTTTGAC
TCTCGTAGCAGACGCAGTAGGCAGTGTCTTGATGCTCGAAGGGCTTGTTC
TTCTGGAGGCCGCCGCCGCACTAACGCGTAGATAAAAGCTTTCCGGGCAG
TGCCCCCCAAGTTTGCAGGTCGAAACACACAAATACGACCCAAGGACTCG
TAGGATTCGGCAACATACTTGAAGCAGGTGACGACGGAGAGCGTTCCCCT
CGCAACAAGCCAACTTGGACGAGAAGACCTTCTTCCGACAATATGCTATC
TATCATTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14857:1844..3151+

>mRNA_L-elsbetiae_contig14857.3509.1 ID=mRNA_L-elsbetiae_contig14857.3509.1|Name=mRNA_L-elsbetiae_contig14857.3509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig14857:1844..3151+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGTATCGTTATCCCCATGGACAGGAAGCAACGAAGACGTGACGGC
AAGAAGAGAGTTTGAGAGTTCAGGGATTCAGAAACAATGCTGTGGAATCA
GATGCGGGTATCGTTATCCCCATGGACAGGAAGCAACGAAGACGTGACGG
CAAGAAGAGAGTTTGAGAGTTCAGGGATTCAGAAACAATGCTGTGGAATC
AGGTGTCTACCCGTCTGCCTCACCCTCAACGTTCGTAAGACCGTGTGTCG
TGGACGGTCAGGACCGCCGAGGAAAACGATGTCGATAGCATCTGAGGTGT
CTACCCGTCTGCCTCACCCTCAACGTTCGTAAGACCGTGTGTCGTGGACG
GTCAGGACCGCCGAGGAAAACGATGTCGATAGCATCTGAGGTGACGACGG
AGAGCGTTCCCCTCGCAACAAGCCAACTTGGACGAGAAGACCTTCTTCCG
ACAATATGCTATCTATCATTGGTGACGACGGAGAGCGTTCCCCTCGCAAC
AAGCCAACTTGGACGAGAAGACCTTCTTCCGACAATATGCTATCTATCAT
TG
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