mRNA_L-elsbetiae_contig14794.3475.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14794.3475.1
Unique NamemRNA_L-elsbetiae_contig14794.3475.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14794.3475.1 vs. uniprot
Match: A0A6H5JIX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 9.990e-18
Identity = 77/145 (53.10%), Postives = 96/145 (66.21%), Query Frame = 3 
Query:    6 GDGAGLMEELREERRLREHDEEHYLAANKKERQQRREWEARCDEHVRDKREQAKRSREEAAAQVAAEREKWDRRMAAERRKGEALKKKLEKAEAVVKMQMESFKEVDEENDELREEVVQLRXXXXXXXXKLGMEIE-EEEEEEGS 437
            GD  G+ +EL EER+LRE DE  Y AA ++ERQ RREWEAR DEH RDKREQAK+ R     Q+AAER++ +              +  +KAE VVKMQ+   KE+D+ENDELR       XXXXXXX KLG+E + E+EEEEG+
Sbjct: 1582 GDVVGMRQELEEERKLREEDERRYEAALQQERQHRREWEARSDEHARDKREQAKQHRXXMRRQIAAERKRAEGXXXXXXXXXXXXAQ--QKAEEVVKMQLTMIKEMDQENDELR-------XXXXXXXEKLGIEDDGEDEEEEGT 1717
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BLAST of mRNA_L-elsbetiae_contig14794.3475.1 vs. uniprot
Match: D7FZK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZK0_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.410e-9
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:    6 GDGAGLMEELREERRLREHDEEHYLAANKKERQQRREWEARCDEHVRDKREQAK 167
            GD  G+ +EL EERRLRE DE+ + AA +KERQ RREWEAR DEH RDKREQAK
Sbjct: 1085 GDVVGMRQELEEERRLREEDEKRHEAALQKERQHRREWEARSDEHARDKREQAK 1138
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14794.3475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIX2_9PHAE9.990e-1853.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZK0_ECTSI1.410e-970.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14794contigL-elsbetiae_contig14794:1102..2940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size503
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14794.3475.1prot_L-elsbetiae_contig14794.3475.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14794 1125..2877 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.2564285-UTR-L-elsbetiae_contig14794:1101..11241622815596.2564285-UTR-L-elsbetiae_contig14794:1101..1124Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14794 1102..1124 +
1691682981.03368-UTR-L-elsbetiae_contig14794:1101..11241691682981.03368-UTR-L-elsbetiae_contig14794:1101..1124Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14794 1102..1124 +
1622815596.2995868-UTR-L-elsbetiae_contig14794:2877..29401622815596.2995868-UTR-L-elsbetiae_contig14794:2877..2940Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14794 2878..2940 +
1691682981.1005483-UTR-L-elsbetiae_contig14794:2877..29401691682981.1005483-UTR-L-elsbetiae_contig14794:2877..2940Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14794 2878..2940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.269976-CDS-L-elsbetiae_contig14794:1124..11531622815596.269976-CDS-L-elsbetiae_contig14794:1124..1153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14794 1125..1153 +
1691682981.0434964-CDS-L-elsbetiae_contig14794:1124..11531691682981.0434964-CDS-L-elsbetiae_contig14794:1124..1153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14794 1125..1153 +
1622815596.2804523-CDS-L-elsbetiae_contig14794:1621..17511622815596.2804523-CDS-L-elsbetiae_contig14794:1621..1751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14794 1622..1751 +
1691682981.0755203-CDS-L-elsbetiae_contig14794:1621..17511691682981.0755203-CDS-L-elsbetiae_contig14794:1621..1751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14794 1622..1751 +
1622815596.2899756-CDS-L-elsbetiae_contig14794:2619..28771622815596.2899756-CDS-L-elsbetiae_contig14794:2619..2877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14794 2620..2877 +
1691682981.0881274-CDS-L-elsbetiae_contig14794:2619..28771691682981.0881274-CDS-L-elsbetiae_contig14794:2619..2877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14794 2620..2877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14794.3475.1

>prot_L-elsbetiae_contig14794.3475.1 ID=prot_L-elsbetiae_contig14794.3475.1|Name=mRNA_L-elsbetiae_contig14794.3475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MEELREERRLREHDEEHYLAANKKERQQRREWEARCDEHVRDKREQAKRS
REEAAAQVAAEREKWDRRMAAERRKGEALKKKLEKAEAVVKMQMESFKEV
DEENDELREEVVQLREENDEFREKLGMEIEEEEEEEGS*
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mRNA from alignment at L-elsbetiae_contig14794:1102..2940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14794.3475.1 ID=mRNA_L-elsbetiae_contig14794.3475.1|Name=mRNA_L-elsbetiae_contig14794.3475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1839bp|location=Sequence derived from alignment at L-elsbetiae_contig14794:1102..2940+ (Laminarionema elsbetiae ELsaHSoW15)
AATCTGGGGACGGAGCGGGGCTGATGGAAGAGCTGCGGGAAGAGAGGAGA
CTGTGAGTATCGCACAGACATACCATATGATACAATACGAGTATTTACCG
GTTTTATTCCATTTACATTAGTTTGTCCCGCCGGATTGTATGCTCCCAGC
CAGGAGTTCCAGACATGCTAAATAGATGTGCAGCAGTTTCAGGTTCTCTC
CCAGTAGGTATCGAGCTCGGGAGGCGGAGCAACGTTTCCACCCCGAGTTT
ACGTGCTATTTCTATCGTTATTGTTGTTGTTTGCCAGAGTGCAGGGCGGG
GTAAGAGCCCGGAAACACTATCCATCCGTCCGCCTCAGCTTTTTCGCTCA
GTGCCCCCACTCCGCTGCCAGGGAGATGTCGACCTGACTCGGACCCCGCC
CCCCCGCCCACCCCACGGCGGTTTCGTAGATACATGGATGGCGTGTTGTT
TGTTTTGCTCAACAACTTCCCCCGCTGAACACACGGAACGCCTCGCTCGG
CGCACGCGCACACGCCGCAGGCGCGAGCACGACGAAGAGCACTACTTGGC
CGCCAACAAGAAGGAGCGGCAGCAGCGGCGCGAGTGGGAAGCGCGCTGCG
ATGAGCACGTCCGAGACAAGCGCGAGCAGGCCAAGCGGTCCCGCGAAGAG
GTAAGGGGCCACGTGGGCAGGGGACAGCCGTGTAGTAGGGAGGGAGGGAG
GGAGGGAGGGAGAACCCCCACGAAACCAACGAGTATTCTCCCAAATAATT
GTTGTGAAAGTAGCTAAGGAAGACAGCGGCAGTACCGTTGAACCCACGAT
ATATCGGGTAGGGCAGCAGCCCAGAGAGGGTATACAGCCTCTGTTTGTTT
TGGCCCAAACATCCACCGCCATTCGGCCTCGAACTAGTATCCTAATCGTA
GATGTGAACCTATGGTCTAACCCATACTAAAAGACGTAACGTCTACCATT
GCCCAACGCACAACGACCTAAATTGTATACGAAGTATAGCTTCCCATGTA
TGTACACAGCGCATTACACCTGGTCAGCATCAAGGTTCGACATCCCGCCG
CTGCGCGCGCCCACAGCTTGTGTATTTTTTTATCTCAAGAGCGACGCACA
TGCTACTCTCGTCTGGGTTGGTGGTTGGGGTATTGTGAAAGAGTTCCGAA
AGATGAAGCTGAACTGCGCGCAAAGCAGCATCGTGCCGGAATGTTTTTTT
TGCATGGTGGTTGGTGGTGGTCGTGGACTCTTTCAAAACGCTTGGTGTGG
GGCAAAAGAGGGCGTGCGTTACGCGTGCACCAGCGTTGAACTTTTGAGGG
CCCTCACCCAGCCAGGTTTTCCCTCGCCCAAGCGTCCCCGAGAAATCACA
CCAGCCTATTATTGCACTTATGACGTCACCCCTCTTCTCGGAACAGGCGG
CAGAAATCACACCAGCCAATTATTGCACTTATGACGTCACTCCTCTTCTC
GGAACAGGCGGCAGAAATCACACCAGCCAATTATTGCACTTATGACGTCA
CCCCTCTTCTCGGAACAGGCGGCGGCACAGGTGGCGGCGGAAAGGGAGAA
GTGGGATAGACGGATGGCGGCGGAAAGGAGGAAGGGGGAGGCACTCAAGA
AGAAGCTCGAGAAGGCCGAGGCGGTGGTGAAGATGCAGATGGAGAGTTTC
AAGGAAGTAGACGAGGAGAACGACGAGCTGAGAGAGGAGGTCGTCCAGCT
CAGGGAGGAGAACGACGAATTCAGGGAGAAGCTTGGGATGGAAATCGAGG
AGGAGGAGGAAGAAGAAGGGTCATGAGGGCGCGCAGGAGCGGGGGATACA
AACCGAAAGGGTGTGCAGACAGTAGTAGTAGTACGAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14794:1102..2940+

>mRNA_L-elsbetiae_contig14794.3475.1 ID=mRNA_L-elsbetiae_contig14794.3475.1|Name=mRNA_L-elsbetiae_contig14794.3475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig14794:1102..2940+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGAGCTGCGGGAAGAGAGGAGACTATGGAAGAGCTGCGGGAAGAG
AGGAGACTGCGCGAGCACGACGAAGAGCACTACTTGGCCGCCAACAAGAA
GGAGCGGCAGCAGCGGCGCGAGTGGGAAGCGCGCTGCGATGAGCACGTCC
GAGACAAGCGCGAGCAGGCCAAGCGGTCCCGCGAAGAGGCGCGAGCACGA
CGAAGAGCACTACTTGGCCGCCAACAAGAAGGAGCGGCAGCAGCGGCGCG
AGTGGGAAGCGCGCTGCGATGAGCACGTCCGAGACAAGCGCGAGCAGGCC
AAGCGGTCCCGCGAAGAGGCGGCGGCACAGGTGGCGGCGGAAAGGGAGAA
GTGGGATAGACGGATGGCGGCGGAAAGGAGGAAGGGGGAGGCACTCAAGA
AGAAGCTCGAGAAGGCCGAGGCGGTGGTGAAGATGCAGATGGAGAGTTTC
AAGGAAGTAGACGAGGAGAACGACGAGCTGAGAGAGGAGGTCGTCCAGCT
CAGGGAGGAGAACGACGAATTCAGGGAGAAGCTTGGGATGGAAATCGAGG
AGGAGGAGGAAGAAGAAGGGTCATGAGCGGCGGCACAGGTGGCGGCGGAA
AGGGAGAAGTGGGATAGACGGATGGCGGCGGAAAGGAGGAAGGGGGAGGC
ACTCAAGAAGAAGCTCGAGAAGGCCGAGGCGGTGGTGAAGATGCAGATGG
AGAGTTTCAAGGAAGTAGACGAGGAGAACGACGAGCTGAGAGAGGAGGTC
GTCCAGCTCAGGGAGGAGAACGACGAATTCAGGGAGAAGCTTGGGATGGA
AATCGAGGAGGAGGAGGAAGAAGAAGGGTCATGA
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