mRNA_L-elsbetiae_contig14784.3468.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14784.3468.1
Unique NamemRNA_L-elsbetiae_contig14784.3468.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14784.3468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14784contigL-elsbetiae_contig14784:94..1723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_002270.1
Exons2
Model size435
Cds size360
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14784.3468.1prot_L-elsbetiae_contig14784.3468.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14784 168..1723 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.7128954-UTR-L-elsbetiae_contig14784:93..1671622815595.7128954-UTR-L-elsbetiae_contig14784:93..167Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14784 94..167 -
1691682980.714077-UTR-L-elsbetiae_contig14784:93..1671691682980.714077-UTR-L-elsbetiae_contig14784:93..167Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14784 94..167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.7301645-CDS-L-elsbetiae_contig14784:167..4931622815595.7301645-CDS-L-elsbetiae_contig14784:167..493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14784 168..493 -
1691682980.725771-CDS-L-elsbetiae_contig14784:167..4931691682980.725771-CDS-L-elsbetiae_contig14784:167..493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14784 168..493 -
1622815595.7461946-CDS-L-elsbetiae_contig14784:1689..17231622815595.7461946-CDS-L-elsbetiae_contig14784:1689..1723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14784 1690..1723 -
1691682980.7373888-CDS-L-elsbetiae_contig14784:1689..17231691682980.7373888-CDS-L-elsbetiae_contig14784:1689..1723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14784 1690..1723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14784.3468.1

>prot_L-elsbetiae_contig14784.3468.1 ID=prot_L-elsbetiae_contig14784.3468.1|Name=mRNA_L-elsbetiae_contig14784.3468.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
CLENSLLLSHLQCLGEANDCTIDGVCPEGSAVQQDSADDAVGAVDGSGDE
GNDSVVDTTVDDGGEEGNDSVVRTVDGSGDEDDDLAVDLAGSSGGNTVAC
AAATAFVLPTLLSGVAVLL*
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mRNA from alignment at L-elsbetiae_contig14784:94..1723-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14784.3468.1 ID=mRNA_L-elsbetiae_contig14784.3468.1|Name=mRNA_L-elsbetiae_contig14784.3468.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1630bp|location=Sequence derived from alignment at L-elsbetiae_contig14784:94..1723- (Laminarionema elsbetiae ELsaHSoW15)
TGCCTGGAGAACTCCCTCCTCCTCAGCCATCTTCGTGAGTATGTCCATAA
ATATATACTTCTAGATCTATATATACATGTATGTTAAGTGCGTGTGTATG
TATGTATGTATGTATGTATGTATACACTCGCAGAAAAATCTCTGTGAACG
CGCTGCACTCGCACGCGAATTAGGTACGTTAGTACTTGAGAGAAGCACCA
CCTACTACTACACTGTACCATCGGGCACTTCAGCCGTTCTAGCCACAAAC
AGTTGGGCGGCCGGCCCCTATTCGACCTTCTTCCGTGGTCCGCGCTCGCT
CGCGTCGAACGACGTCGTATGGAGCCGGCCGACTATATATGCAGCGTGTA
CGCGGCACTTTTTTCGCGGTGCGTCCGATCGCCGTCCCGCACATCATTTT
TTTTTTGTGTCCTGGTGCGAGGCTCTGTTGACTCGCTGCGGACTCTAGTC
GGAGGCGCCCCTGTTGTATGAACGTGCTCTTCTTGTATTATCGGATAGAG
TAAAGCAAGACAGCAGAACAGTCAGGCAAGCGCCACTGCCCCGGGAGAGA
AGGGTCCCCGTGACATGCAGATGATCATACCACTACACCAACTGCGTACG
TACCCCCCATATCCATCCCAGACCGGTATCTTTGCCCAAGTACCACAAAC
ATTTTTTTTGCCTCGTTTTCGCTCTTTGGTATTAAATACCATTAAATACC
GTGCAAGACGCCCGCCCACGCAAGATGGCGCAGTGTCGGTTGGGGCGCAT
TCTATTTTGGGTGCACGTGCCAGCATGCAATGACGTAACCATGCGAGTCA
TCGCACCCCCGCCCGGAACGATTTTCAAAGCTCGATTTACGCCTTCACGA
AGGGGGGTGCCGTAACCGAAAAAGGGGGGGGGGCGGGGGGAGTTGGGACA
ATCACGTCGGAAGCTGTCTAAAACGTGCCGTTTGGTGTTGGCACCCTTTT
CTTCGCAAAGGAGTAATCGAGCTTTGAAATTGGTGCGGGAACTCGCATAA
TTCCGGTATGTAGTCCGTACCTTTCGCGTAGTTCATGGATTGATTAGCCC
ATCCATAGACCACCGTCTGGCACTATAAAAAAAAGAAAAGCCGCACGTCT
TCAAAAAGACTGCATCCAGTCGATTAAATCCATCTCAGTGCAAACATTAA
CTGGCTTGTGCTGACGTGCAAAGAAAACCCCCTCTTCTTGCCCCCCCCCC
CCCCCCATCTTATTCGCAACAACCACACAGAGTGCCTAGGGGAAGCGAAC
GACTGCACCATTGACGGGGTGTGCCCTGAAGGCAGCGCCGTCCAACAAGA
CAGCGCCGATGATGCTGTGGGCGCCGTGGACGGCAGCGGCGACGAAGGCA
ACGACTCGGTTGTCGACACCACCGTGGACGACGGCGGCGAAGAAGGCAAC
GACTCGGTTGTCCGTACCGTGGACGGCAGCGGCGACGAAGATGACGACTT
GGCTGTGGACTTAGCCGGTTCATCCGGGGGTAACACCGTCGCATGCGCAG
CCGCTACGGCGTTTGTCCTGCCGACGTTGTTGTCCGGCGTCGCAGTGCTC
CTGTAAATCACCCTGCTTCTCGCACTTGGTTAGCAGCGACACGATTGATT
TCGCCGGCAGAGAGAGATGACTTTTTGTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14784:94..1723-

>mRNA_L-elsbetiae_contig14784.3468.1 ID=mRNA_L-elsbetiae_contig14784.3468.1|Name=mRNA_L-elsbetiae_contig14784.3468.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig14784:94..1723- (Laminarionema elsbetiae ELsaHSoW15)
TGCCTGGAGAACTCCCTCCTCCTCAGCCATCTTCTGCCTGGAGAACTCCC
TCCTCCTCAGCCATCTTCAGTGCCTAGGGGAAGCGAACGACTGCACCATT
GACGGGGTGTGCCCTGAAGGCAGCGCCGTCCAACAAGACAGCGCCGATGA
TGCTGTGGGCGCCGTGGACGGCAGCGGCGACGAAGGCAACGACTCGGTTG
TCGACACCACCGTGGACGACGGCGGCGAAGAAGGCAACGACTCGGTTGTC
CGTACCGTGGACGGCAGCGGCGACGAAGATGACGACTTGGCTGTGGACTT
AGCCGGTTCATCCGGGGGTAACACCGTCGCATGCGCAGCCGCTACGGCGT
TTGTCCTGCCGACGTTGTTGTCCGGCGTCGCAGTGCTCCTGTAAAGTGCC
TAGGGGAAGCGAACGACTGCACCATTGACGGGGTGTGCCCTGAAGGCAGC
GCCGTCCAACAAGACAGCGCCGATGATGCTGTGGGCGCCGTGGACGGCAG
CGGCGACGAAGGCAACGACTCGGTTGTCGACACCACCGTGGACGACGGCG
GCGAAGAAGGCAACGACTCGGTTGTCCGTACCGTGGACGGCAGCGGCGAC
GAAGATGACGACTTGGCTGTGGACTTAGCCGGTTCATCCGGGGGTAACAC
CGTCGCATGCGCAGCCGCTACGGCGTTTGTCCTGCCGACGTTGTTGTCCG
GCGTCGCAGTGCTCCTGTAA
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