mRNA_L-elsbetiae_contig14724.3433.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14724.3433.1
Unique NamemRNA_L-elsbetiae_contig14724.3433.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14724.3433.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.630e-14
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 3 
Query:  258 LSTRTLHPCDALSYWAKTGQHAFPSLKYVAQQVLGNQPSAAPVERDFSGFG 410
            +++  LHP + LSYWA TG+H+FP+LK+VAQQ  G+QPSAAPVERDFSG G
Sbjct:  722 MTSNDLHPTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCG 772
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BLAST of mRNA_L-elsbetiae_contig14724.3433.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.970e-12
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 3 
Query:  285 DALSYWAKTGQHAFPSLKYVAQQVLGNQPSAAPVERDFSGFG 410
            + LSYW +TG+HAFPSLK+VAQQ  GNQ SAAPVERDFSG G
Sbjct:  389 EVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCG 430
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BLAST of mRNA_L-elsbetiae_contig14724.3433.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.020e-12
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = 2 
Query:    2 SNTQAAAEQQEVVDV--EPEGEASETRVRLITPAPVYDRRTNKEYDVPQDVIDAIERFKAPAGFQEEGSREDSFLYSLGNYVTPLPETLNKDAAP 280
            S+TQ A +  EVV V     G A +  V +  PAPV+ R +  EYDVP+   +A+  F  P GFQ+EG+REDSF+YSLGNY  P  + + +   P
Sbjct:   28 SSTQDAQQDNEVVVVPGSTSGGAPQQSVNVKRPAPVF-RVSGGEYDVPEATKNAVAAFVVPTGFQQEGAREDSFMYSLGNYCVPAAKQVVEKMLP 121
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BLAST of mRNA_L-elsbetiae_contig14724.3433.1 vs. uniprot
Match: A0A6H5KQP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP3_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 5.790e-10
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 2 
Query:    2 SNTQAAAEQQEVVDV--EPEGEASETRVRLITPAPVYDRRTNKEYDVPQDVIDAIERFKAPAGFQEEGSREDSFLYSL 229
            S+TQ A +  EVV V     G A +  V +  P PV+ R +  EYDVP+   +A+  F  PAGFQ+EG+REDSF+YSL
Sbjct:   28 SSTQDAQQDNEVVVVPGSTSGGAPQQSVNVKRPPPVF-RASGGEYDVPEATKNAVASFVVPAGFQQEGAREDSFMYSL 104
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14724.3433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE1.630e-1466.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8W6_9PHAE3.970e-1276.19Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KS21_9PHAE5.020e-1244.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQP3_9PHAE5.790e-1047.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14724contigL-elsbetiae_contig14724:66..4234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size424
Cds size336
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14724.3433.1prot_L-elsbetiae_contig14724.3433.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14724 66..4147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.5680785-CDS-L-elsbetiae_contig14724:65..3371622815592.5680785-CDS-L-elsbetiae_contig14724:65..337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14724 66..337 +
1691682978.8264043-CDS-L-elsbetiae_contig14724:65..3371691682978.8264043-CDS-L-elsbetiae_contig14724:65..337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14724 66..337 +
1622815592.5785923-CDS-L-elsbetiae_contig14724:4083..41471622815592.5785923-CDS-L-elsbetiae_contig14724:4083..4147Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14724 4084..4147 +
1691682978.8357067-CDS-L-elsbetiae_contig14724:4083..41471691682978.8357067-CDS-L-elsbetiae_contig14724:4083..4147Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14724 4084..4147 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.5883107-UTR-L-elsbetiae_contig14724:4147..42341622815592.5883107-UTR-L-elsbetiae_contig14724:4147..4234Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14724 4148..4234 +
1691682978.8436646-UTR-L-elsbetiae_contig14724:4147..42341691682978.8436646-UTR-L-elsbetiae_contig14724:4147..4234Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14724 4148..4234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14724.3433.1

>prot_L-elsbetiae_contig14724.3433.1 ID=prot_L-elsbetiae_contig14724.3433.1|Name=mRNA_L-elsbetiae_contig14724.3433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
LQHTSGCRATGGCRRGAGGRGFRNPCAFDHSRPGLRPPDQQGVRRAAGRH
RRHRAVQGTGRVSGGRLPRGLLPLQLGKLRHALARDSQQGRCTPVTPCPT
GRKLDSTPSPR*
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mRNA from alignment at L-elsbetiae_contig14724:66..4234+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14724.3433.1 ID=mRNA_L-elsbetiae_contig14724.3433.1|Name=mRNA_L-elsbetiae_contig14724.3433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4169bp|location=Sequence derived from alignment at L-elsbetiae_contig14724:66..4234+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCAACACACAAGCGGCTGCAGAGCAACAGGAGGTTGTCGACGTGGAGC
CGGAGGGAGAGGCTTCCGAAACCCGTGTGCGTTTGATCACTCCCGCCCCG
GTCTACGACCGCCGGACCAACAAGGAGTACGACGTGCCGCAGGACGTCAT
CGACGCCATCGAGCGGTTCAAGGCACCGGCCGGGTTTCAGGAGGAAGGCT
CCCGCGAGGACTCCTTCCTCTACAGCTTGGGAAACTACGTCACGCCCTTG
CCAGAGACTCTCAACAAGGACGGCAAGAAAGACAGCCCGGTTCTACTGCC
AAGCCAACAGCCGCTGCCGCGGCCTGACTCGGATGATACCATGTGCGAAC
GGGGCACGGAGCAACGTCAACAAGCACCTGAAGGGCTCTCCTCACTTTTT
GGTTGGCGGCAAGAGTAAGGTGCGGCAGGACAACAAGCAGAACCTGGAGG
GAAACATCGGAGCAGCTGCTGCAGCGGCTCCTAAATTCAGCGGCGTCGGT
GAAAAGAGGTGCGCTCCCTCTATTTTTTGGGTATAAATGTAAATGTACCG
CCATTCCTTTTTTTTTATGTTGTACCGGGAAAAATGTAAGCTGAATGCGC
TAGCTTCTTGGGTTGGAATGTGCAAATACGTTCGATTGTACTACTGCTGT
AGGGTTGGTATATGTTTGGAAAACGTAAAAACGCAAACGTGTCTCCGGTT
GTTTGATTGTTCAGTTAATATTTTTATTTTTGGTATTTCTCATGAAGATG
TGCGTAAAAAATTACAGAAAATATGAACTTGTGTACTACAATTGAATACT
GTCACTACTGCTGCGGCTATACTGCTGCTGCTATATGGCGGTGTTTGTAT
CTCCATCATTCCAAATCAGAAAAAGTGAGCATAAGTGCAATTGCGTATGT
GCGCATTAATGTATGCATTTTGTCGTACCCGCTAGTACGGCACCCGCTAC
GACGGGCACTGCTGTACGAGACCAAACAAAATAAACTATGTTGGAAGTGA
CAGCGTCGTACTCCTCCCCTTGGCCGCACACCGTCTGTTCCCGCTCTTCC
CTACCCCCCCCCTCTCTCTTGCCCCCCCTTCTCTCTTGCCCCCCCCGTCT
CTCTTGCCCCCCCCCCCCTCTGCTTCTCCGCCACGTTGGTTCATTTGCCT
TGCGTGTGTACGTTCTCTTGTGCAGATTGCGGGAGCTGCAGTTGGCCAAG
ATGATGGTTGAGAAGGGCCTGCCTTTCACCTTCTTCTCGAGCGGGAACAT
GTTCAAGGAGATCGTGGCGTGTGCCACAGGTACCAGGACGTTCCCAAGCC
TGACTTCGCGGCGATTGAAGCACCTCCTCGTCGAGATCTACATCGCATTG
AAAAAGGTAAACTTCTGACACATGTTTATGTTTGTTTTTGTTGGGGTGTT
GTAGATGCGCACGGCGGGGGTTGTGATTTTTGCTCTATTTTTATTTTTCA
CCCATCGACACTTGGTGGTCGCCGGTGGGTTTCGTATCTGCTTCCGCCCT
GTCCATCTTGATCGTTTACATATTTTTATTTGTTGTCTTTGTTTGCCTGG
CCGGCGCGAACCCGACAGTGAGCCCCTCGGCACAGTAGAGGAGCGGGGGT
AACGTCTTTGTCTTTCGACCAGTACAGTTTATATATATATATATTTTTTT
TTTCCTGCCGAATTTTTTACCTTAGAGAGTGCGCGTCCTACGGGCCGCGG
CAATTGGTGGTTTGACGTGCGAGCGGGTACCCTAGCTTTTGTGACCACCG
GCGCTATAGATACTAGAAAAGAGCTCAAGTGAGAAAACACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACCTGTGCCGTCCAATT
TGTGAAAAACTAAAACTCGATTTCTGTTTTCGCTCGACGCCACGCCCCGT
CCCGCCGCAGGTGGTCATCGGCAACCTTGCTGAGGATGTGAAGAGAGCGC
CGCTTCCCATCATCCATCACCAGGTTGATCTCTTGACGTGCAAGGTCTCG
GGGAACAAGCACCTGGGGTTCCACGTTTTTTGGGTGAACCGGCAGTTCGA
GTTGAAGGACGCCCTGCTTTCCGTGAGTGGACCTTCTTTTATGTTTTGGA
AATAATCAGTTTGCCCACGGTCGCAATACCGCCATTTCTTTTCCATTTTT
TCAGCATACGATCAACGATTTTGCCGTGGTGTTCGCGCAAGTGGGGTGTG
TCTAAGTCCAAATATGACGTACGTCTGTCGTCCGTTTCTTTGTCGAAATA
TACCAGTAGTAAGCCGTCAGAGGAATGGAACTCCTCCGAGGTGCACGTCT
GTTTGCTGTATCGTCCATACTGCTGTGCAACCCCGCATCTCTACCCCTGA
CAAAGTGCTGGATCCCCCCCCCCCCCCCCCCCCCCTGCCACGTCAATGTT
GCCGCCTCTCGTCATCATCGCAGATCAAGCACTACTCTCCATGCCAGGAG
GTTCTGACCGAAGGGAGGGCCTCCGACGTTCTGCTCCGGATCTACAAGTC
CACGCTGAACGAGTTCGGGTTGACGCCTTCGGACCTCGCCTCGGGAACGA
CGGACTCCGGGTCGGACATCAAGGCCTTGTGCGTCAACGGCCTGAGGGGC
ACCTATGGGGTCGCGTGGGACTGGTGCATCTGCGACATGGCGGTCAAGGC
CGCCGAGCACGGGTTTGGTGTTAGCGCCGACCCGGCGAAGTCCAAGAACC
CGGGCGCACGTGACCTTATCAAGGTCCTCATCAAGGTCGTCGAAAAGCTC
AACAAGTCGGCGACATGGAAGGCGAAGTTCGACGACCTCCAGGCGGACAT
GTTGGGCGAGGTCTTCAAGATCGTCAAGCACGCGCCCCAACGGTGGCTAA
GTCTCAGCCGCACGTTCGAGCGGATCATCCGCTTGTGGCACGTCCTGAGG
AAGCTATACGCCGAGTCGGACGGCATGACGTTCCCCCTCGATGAGGGCAA
CAACAAGGACGGGGTCCTTCAGCTCTACTCCTTGCTGCAGCCGCTTGCCG
CCATCACGCGTGACGGCCAGTTCGGCAAGGTGCCCATGACGGCGGAGATG
GTCATCAAGCTCGGGAAGCTCAAGATGACCGTGCTGGATCTGGAGAAGGA
TCTCAAGGTGTTCGACATCCCCCCCCTTGGAGAGGACGGCCTACCTGAAA
AGGGTAAAAGCAAGAAAGAACTGCCGTTCAAGATGGTGAAACCTGCCGAC
TTGCATCCTGTGGCCGTCACTACCCGGAGGGAGCTCTGCATTGCCTTCAT
GTCCAGGTGCTTTGCCCGTGTCTGGGACCCCACCAAGGCGGATCCCTCCT
GGTTCCGAGACGCTGCTGTCCTCCTCACGCCGTCGTTCAACACGGGGAAG
CACGTAGAGGCTCTGAGGCTAACCGAGGAGGACGACGAGTTCTTGCCGCC
GACCGGGTCTTCGGCAGTCGCTCCGACGACCGACGAGGAAGCGAAGGAGA
AGCTGGACGGTGCTTGGCGTGAAATGCAAAAGCGCGCCCTTGCGTGCAAG
AGGAAAGAGATCGACCGTGCGCGACCTGGCGCGGGAGCGGGCAACCCTTT
CAAGAAGGCCCGCACAACCGGAGGGAGAGGTTCACGCAAGACTGCTGACG
AGGACGAGTTTGCCTGGTTCGGGCGCAGCGCCTCCACCGCTGTCGACGCG
GGCGACGAGGAAGACGCCTTGGAGCAGGAGGTTCGACGCGAGCTTGAGCA
GTACAAGAACCTGGTTGTGCCCACCCAAGAGGTAAGTGTGCAGGGTTAGG
GCTAGTTGTTGTTTTCCTACCCATGGAAGCATGGAGCGTTCGTGTTTTGT
TTAACTGTTGTTTTGCGCTTGTTTTTTGCGCTAACCCTGCTTGTTATTGC
CCTGCTAGAAAATCGCGGAGGGGTTTCCTGCCCATCTTCTTGATAGTGCT
CTGTGTCCGAATTGGTGTGTAGCGAAGTATGGCACGCTTTTCCATTTCTC
TTCGTAAATCAAACCTGACCTTCACCAAACACCGCGTCCCTTCCGTGTCC
TTGACTCTACTCTTTCAGCTGCACCCCTGTGACGCCCTGTCCTACTGGGC
GAAAACTGGACAGCACGCCTTCCCCTCGCTAAAGTATGTCGCGCAGCAGG
TCCTCGGAAACCAACCCTCTGCCGCTCCGGTTGAGCGAGACTTCAGCGGC
TTTGGCGGTCTCGTGACGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14724:66..4234+

>mRNA_L-elsbetiae_contig14724.3433.1 ID=mRNA_L-elsbetiae_contig14724.3433.1|Name=mRNA_L-elsbetiae_contig14724.3433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig14724:66..4234+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCAACACACAAGCGGCTGCAGAGCAACAGGAGGTTGTCGACGTGGAGC
CGGAGGGAGAGGCTTCCGAAACCCGTGTGCGTTTGATCACTCCCGCCCCG
GTCTACGACCGCCGGACCAACAAGGAGTACGACGTGCCGCAGGACGTCAT
CGACGCCATCGAGCGGTTCAAGGCACCGGCCGGGTTTCAGGAGGAAGGCT
CCCGCGAGGACTCCTTCCTCTACAGCTTGGGAAACTACGTCACGCCCTTG
CCAGAGACTCTCAACAAGGACGCTCCAACACACAAGCGGCTGCAGAGCAA
CAGGAGGTTGTCGACGTGGAGCCGGAGGGAGAGGCTTCCGAAACCCGTGT
GCGTTTGATCACTCCCGCCCCGGTCTACGACCGCCGGACCAACAAGGAGT
ACGACGTGCCGCAGGACGTCATCGACGCCATCGAGCGGTTCAAGGCACCG
GCCGGGTTTCAGGAGGAAGGCTCCCGCGAGGACTCCTTCCTCTACAGCTT
GGGAAACTACGTCACGCCCTTGCCAGAGACTCTCAACAAGGACGCTGCAC
CCCTGTGACGCCCTGTCCTACTGGGCGAAAACTGGACAGCACGCCTTCCC
CTCGCTAACTGCACCCCTGTGACGCCCTGTCCTACTGGGCGAAAACTGGA
CAGCACGCCTTCCCCTCGCTAA
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