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Homology
BLAST of mRNA_L-elsbetiae_contig147.3413.1 vs. uniprot
Match: A0A6H5LI96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI96_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 9.310e-15 Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 1 MGDAVLFQTARSDGQHLGPGSYDLPSTLRTGRRPTTAPEPAMPAVPGVPHALSGARRA 174
MGDAVLF+TAR+DG+HLGPGSYDLP TL GRRP+T PE ++ P S RRA
Sbjct: 57 MGDAVLFKTARADGEHLGPGSYDLPPTLNNGRRPSTGPEASLRVKPQQTRPRSRLRRA 114
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 343 |
| Cds size | 342 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815590.8522675-CDS-L-elsbetiae_contig147:10578..10669 | 1622815590.8522675-CDS-L-elsbetiae_contig147:10578..10669 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig147 10579..10669 + |
| 1691682977.8611453-CDS-L-elsbetiae_contig147:10578..10669 | 1691682977.8611453-CDS-L-elsbetiae_contig147:10578..10669 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig147 10579..10669 + |
| 1622815590.8681188-CDS-L-elsbetiae_contig147:11467..11569 | 1622815590.8681188-CDS-L-elsbetiae_contig147:11467..11569 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig147 11468..11569 + |
| 1691682977.8693721-CDS-L-elsbetiae_contig147:11467..11569 | 1691682977.8693721-CDS-L-elsbetiae_contig147:11467..11569 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig147 11468..11569 + |
| 1622815590.8883672-CDS-L-elsbetiae_contig147:12164..12313 | 1622815590.8883672-CDS-L-elsbetiae_contig147:12164..12313 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig147 12165..12313 + |
| 1691682977.8774347-CDS-L-elsbetiae_contig147:12164..12313 | 1691682977.8774347-CDS-L-elsbetiae_contig147:12164..12313 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig147 12165..12313 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig147.3413.1 >prot_L-elsbetiae_contig147.3413.1 ID=prot_L-elsbetiae_contig147.3413.1|Name=mRNA_L-elsbetiae_contig147.3413.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MGDAVLFQTARSDGQHLGPGSYDLPSTLRTGRRPTTAPEPAMPAVPGVPH
ALSGARRADRDGRLGGPRSTREGKGHAASVPAASSARPQDARKGKASSAR
PQDARKGKGAAGLL back to topmRNA from alignment at L-elsbetiae_contig147:10579..12313+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig147.3413.1 ID=mRNA_L-elsbetiae_contig147.3413.1|Name=mRNA_L-elsbetiae_contig147.3413.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1735bp|location=Sequence derived from alignment at L-elsbetiae_contig147:10579..12313+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGACGCTGTTTTGTTCCAAACCGCTCGATCCGACGGGCAGCACCT
CGGACCGGGCTCGTACGACCTGCCCTCTACACTCAGGACCGGTACGTAGG
CGGGGGCGTTTTACTTGTCGACTCGCCCGTTGTTGCTCTCGGTGTACATA
CAAGCTCTGGTCCCTCGAGCCAAGTCGTTTGCCACTGTATCTACTTCCAG
AGTAAACGTATGTTTTCTGTGCTTTCTCCTCTATCTGCACGAAGGTCTGG
GTCGGAAGCGCCACATTTGCATGGTGTTTACCAGGTTTACTCGGAGTTAG
TTTGTGAAGAACCTTGGCGTTTTGATGCTTTCGTGCGTGTAGGTTCGGGT
GAAAAAAACTCGAAGCTTGTTGGAAGGTGTGTTTCGGGCGTATCACCGGG
AGAGCAAACAAGAACTCGAACAAGTCTTGTTTGAAGCAGTGACGGGCTAC
ACAGGCTTACCCGAAGAACCAAACCCAAGCTGCTTCACCCAAACTCTCCA
AGTGTTGGACCCACTTTCGACATCCACGGCGCCCCTTAGGCTCTGAGTGT
TTATCTTGTGCAGGGGTGTTCCTTTTTCCAAGGCTTTAGAGACGCTCCCA
TGCCCATATCTACAAGCAGGAGAAGGAAAGAGAAATGATCCCCAAAGTCG
CCTCTGCCTCAACAGTCACGCTCAAAAAGGCATGCATGAATACCAGGCTT
GCAGCAGTACCGGTGTTGGCCGTGAAAACCAATTGCCGCAAGCCGAAACA
CGGCGGTGTCCAGGCATGTATGATCGTAGTGCTGCAAATATAGCTCCTCT
GCATCCATACATGGAACCATCTTGACCGCCACGGTTTATCGCCGCGTCTC
TTTCAAATCCACCCTGACACTACATGTATTATACGATAGGCCGCAGACCC
ACCACCGCGCCTGAGCCTGCCATGCCTGCCGTGCCTGGCGTGCCGCACGC
CCTGAGCGGGGCTAGACGTGCGGATCGCGACGGCCGACTAGGTGAGTACC
GCGGTGATGCAGTGTGCTCTGGGAAGTGCCTCGGTGGGCGAACGAATTTA
ATCGCGATTTTTTTCCACAACGAAGAGGGTGCGATAGACTAAGAGTATAG
AACCTGGAAAGATATTGTCGAAATCTCGCTGTTAATAGCGGTGCATCGCT
CGGGTATGCATAGCAACCTCCCCATCCGTGGAGAGATGATACGCTACGAG
ATTCGTTCTCCTCCTGGGGTGTTTGTTCCCAGAGGATGCTACGGTAGGCG
CACTGATTGCACTTCGAGAAGTTTGATATCGTTTTTTTGTCTCTTGTGTG
AAGAACACGAATAAATCCGTCGGATAGAACATTTTCATTTGATGTGTGTC
GAGGATGTTGTCGTTATTTATTATTTATCTTTGTGAAACCAAGTTTCACC
CCCAGAGCTTGTAGTGGACAACCAACCTTTGTTTTCGCTACAACATAGCA
AATTGGGCCATGAAGTAAGCAGAAGAGTTTAAATGCGTGTTTCGGTGATC
CCGCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTGCCA
CGGTTTCCTGTGGCGGTTACGGCGATGGTGAGCTAGGCGGACCACGCTCG
ACGAGGGAAGGGAAAGGACATGCTGCCTCCGTTCCCGCCGCAAGCTCAGC
GAGGCCTCAAGATGCGAGGAAAGGGAAAGCAAGTTCAGCGAGGCCTCAAG
ATGCGAGGAAAGGGAAAGGGGCTGCGGGGTTGCTC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig147:10579..12313+ >mRNA_L-elsbetiae_contig147.3413.1 ID=mRNA_L-elsbetiae_contig147.3413.1|Name=mRNA_L-elsbetiae_contig147.3413.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig147:10579..12313+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGACGCTGTTTTGTTCCAAACCGCTCGATCCGACGGGCAGCACCT
CGGACCGGGCTCGTACGACCTGCCCTCTACACTCAGGACCGATGGGAGAC
GCTGTTTTGTTCCAAACCGCTCGATCCGACGGGCAGCACCTCGGACCGGG
CTCGTACGACCTGCCCTCTACACTCAGGACCGGCCGCAGACCCACCACCG
CGCCTGAGCCTGCCATGCCTGCCGTGCCTGGCGTGCCGCACGCCCTGAGC
GGGGCTAGACGTGCGGATCGCGACGGCCGACTAGGCCGCAGACCCACCAC
CGCGCCTGAGCCTGCCATGCCTGCCGTGCCTGGCGTGCCGCACGCCCTGA
GCGGGGCTAGACGTGCGGATCGCGACGGCCGACTAGGCGGACCACGCTCG
ACGAGGGAAGGGAAAGGACATGCTGCCTCCGTTCCCGCCGCAAGCTCAGC
GAGGCCTCAAGATGCGAGGAAAGGGAAAGCAAGTTCAGCGAGGCCTCAAG
ATGCGAGGAAAGGGAAAGGGGCTGCGGGGTTGCTCGCGGACCACGCTCGA
CGAGGGAAGGGAAAGGACATGCTGCCTCCGTTCCCGCCGCAAGCTCAGCG
AGGCCTCAAGATGCGAGGAAAGGGAAAGCAAGTTCAGCGAGGCCTCAAGA
TGCGAGGAAAGGGAAAGGGGCTGCGGGGTTGCTC back to top
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