mRNA_L-elsbetiae_contig14684.3407.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig14684.3407.1
Unique Name	mRNA_L-elsbetiae_contig14684.3407.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig14684.3407.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.770e-46
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 1

Query:  148 GWDDPAGVAQGRWAWGTEPPGEVQLNLAPRRRHGARTVPLVALLLLAAWLTVLAAALCLVVLPFLLGRLVFSLAHLPTHWTHDTASFAVGLTLLK 432
            GWDDPAGVAQGRWAWG EPPGEVQLNLAPRRRHGAR VPLVA+LLLAAW TVL AALCLVVLPFLLGRL+FSL HLP  WTHDTASFAVGLTLLK
Sbjct: 1072 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLK 1166

[Close]

BLAST of mRNA_L-elsbetiae_contig14684.3407.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.800e-46
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 1

Query:  148 GWDDPAGVAQGRWAWGTEPPGEVQLNLAPRRRHGARTVPLVALLLLAAWLTVLAAALCLVVLPFLLGRLVFSLAHLPTHWTHDTASFAVGLTLLK 432
            GWDDPAGVAQGRWAWG EPPGEVQLNLAPRRRHGAR VPLVA+LLLAAW TVL AALCLVVLPFLLGRL+FSL HLP  WTHDTASFAVGLTLLK
Sbjct: 1156 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLK 1250

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig14684.3407.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig14684.3407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LBR1_ECTSI	1.770e-46	90.53	RING-CH-type domain-containing protein n=1 Tax=Ect...	[more]
A0A6H5JWM1_9PHAE	1.800e-46	90.53	RING-CH-type domain-containing protein n=1 Tax=Ect...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig14684	contig	L-elsbetiae_contig14684:1695..3653 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	172.9
Seed ortholog evalue	1.1e-40
Seed eggNOG ortholog	2880.D8LBR1
KEGG ko	ko:K10661
KEGG Pathway	ko04141,map04141
Hectar predicted targeting category	other localisation
GOs	GO:0000176,GO:0000177,GO:0000178,GO:0000209,GO:0000291,GO:0000956,GO:0001101,GO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004536,GO:0004540,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006720,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009414,GO:0009415,GO:0009628,GO:0009698,GO:0009699,GO:0009892,GO:0009893,GO:0009987,GO:0010025,GO:0010033,GO:0010035,GO:0010143,GO:0010166,GO:0010243,GO:0010345,GO:0010467,GO:0010468,GO:0010498,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016021,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016180,GO:0016567,GO:0016740,GO:0016787,GO:0016788,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019748,GO:0019787,GO:0019899,GO:0019941,GO:0022613,GO:0030163,GO:0030176,GO:0030433,GO:0031123,GO:0031125,GO:0031126,GO:0031224,GO:0031227,GO:0031624,GO:0031974,GO:0031981,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0042254,GO:0042335,GO:0042802,GO:0043085,GO:0043144,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0051341,GO:0051353,GO:0051603,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071025,GO:0071027,GO:0071028,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098827,GO:0140096,GO:0140097,GO:0140098,GO:1900490,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1902494,GO:1905354,GO:1990381,GO:2001215
EggNOG free text desc.	chlorophyll binding
EggNOG OGs	COG5183@1,KOG1609@2759
EC	2.3.2.27
COG Functional cat.	A
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko04121
Exons	3
Model size	434
Cds size	432
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig14684.3407.1	prot_L-elsbetiae_contig14684.3407.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig14684 1695..3652 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815590.5309138-CDS-L-elsbetiae_contig14684:1694..1799	1622815590.5309138-CDS-L-elsbetiae_contig14684:1694..1799	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig14684 1695..1799 +
1691682977.7259853-CDS-L-elsbetiae_contig14684:1694..1799	1691682977.7259853-CDS-L-elsbetiae_contig14684:1694..1799	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig14684 1695..1799 +
1622815590.5434537-CDS-L-elsbetiae_contig14684:2524..2655	1622815590.5434537-CDS-L-elsbetiae_contig14684:2524..2655	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig14684 2525..2655 +
1691682977.7386189-CDS-L-elsbetiae_contig14684:2524..2655	1691682977.7386189-CDS-L-elsbetiae_contig14684:2524..2655	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig14684 2525..2655 +
1622815590.5553057-CDS-L-elsbetiae_contig14684:3456..3652	1622815590.5553057-CDS-L-elsbetiae_contig14684:3456..3652	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig14684 3457..3652 +
1691682977.7494268-CDS-L-elsbetiae_contig14684:3456..3652	1691682977.7494268-CDS-L-elsbetiae_contig14684:3456..3652	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig14684 3457..3652 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig14684:1695..3653+
coding sequence from alignment at L-elsbetiae_contig14684:1695..3653+

protein sequence of mRNA_L-elsbetiae_contig14684.3407.1

>prot_L-elsbetiae_contig14684.3407.1 ID=prot_L-elsbetiae_contig14684.3407.1|Name=mRNA_L-elsbetiae_contig14684.3407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
VSHHGDGGGGGGGCRQWGAAVKAWWDGGEAGKDEEEGIIVGPPLRRPPPG
WDDPAGVAQGRWAWGTEPPGEVQLNLAPRRRHGARTVPLVALLLLAAWLT
VLAAALCLVVLPFLLGRLVFSLAHLPTHWTHDTASFAVGLTLLK

mRNA from alignment at L-elsbetiae_contig14684:1695..3653+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig14684.3407.1 ID=mRNA_L-elsbetiae_contig14684.3407.1|Name=mRNA_L-elsbetiae_contig14684.3407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1959bp|location=Sequence derived from alignment at L-elsbetiae_contig14684:1695..3653+ (Laminarionema elsbetiae ELsaHSoW15)
GTCAGCCACCATGGTGACGGCGGCGGCGGTGGCGGTGGCTGCAGACAGTG
GGGCGCGGCCGTAAAGGCCTGGTGGGACGGAGGAGAAGCGGGCAAGGACG
AGGAGGTGTGTGCCGGCTGGGTTTGTTGCGCGTGGAACTGTTGTGTATCG
AAGAGGCGATCCTGGTGCGCCCAGTCCGTCGTCTTGTCCCTCAGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTCCTGCTCTTGCTGTGATGGCCTGC
GAGTCCAGGGTTATGGTGTCGCCAAGGGATGTGTGGAAGGGCAGATGAGA
TTATTTATTCCTGGGTTGTTCTCCTTCCTCGCTGCTGCTGCTGAGCGTGC
CGGTTCCGTTTGTTTTTTTGTAAAGAACCTATATACATGCATACGTCCCA
GAAAAGTGCCACGCTAGGCTAACGCCCTTTTTTCACAGCAGTTCGTGCGT
TTGTAGAAAAATGCTGTTGTATTGTGCGAGTTTAGTGCCATTTAGTAGTG
TAGAGGTGTGAGGTGTGATTTTATATATATCGTGGTTTGTGGAAAATGAT
AGTGACTCAAAAGCTATACCAAAAGGTCCTCCTTACCCTGTGGTCCATTT
GCTCGCGGCAATTATTTGCTCGCGGCACTGAGGTGCAGTACGGCAGTATA
GTGGAGTGAGTACCTTGTGTATGTATATCGCAAGCAATGGCCGCACCTCG
CCCCCCCCCTCCCCTAAATGTCATCACAAGAATAACACCCGCATCATTAC
AAGCGCATCTTACGAACTCGAAACCCGTTCTTATTTTATTTCGTGTTGTC
CTGTTCTTGTTTTTCTCGCTGTGTCTACAGGAGGGTATCATCGTTGGGCC
TCCGCTGCGGCGCCCCCCTCCCGGCTGGGATGACCCGGCGGGGGTGGCGC
AAGGGAGGTGGGCGTGGGGCACGGAGCCCCCTGGCGAGGTGCAGCTCAAC
CTGGCCCCGAGGTGTGTACGGATGATGATTACGTACGTGCTGATAGCGTG
ATCGGTTTAAACTACAGCAGTATAGCAGCATGGTTTTGGTTCCTATGAGT
GCTGTTGTACCTACGGCCGTGGTTTTATTTCGCTTTGAATGAAGTCTTGG
CCCATCCACTTTACAGCAGGGGAGAATTTGACGCCTTCGAAAGATACGAT
ACATGGCTGATTCACGTACATAATACGTGCATACGACGTGTCATCTCCGG
CAAAGAAAAATGAGGGCTAAACATGTTAACGTAGATATGATGTGCAGACG
GCACACGCTTGACGGGTTTCCCATGTTCCCCCCTTTCTTCCAAGTCTCGC
CTACCCTGCCTGTCCGTATATTATGCAGCTCTCTTCTCGAGTGTCTTATT
TTGCCACGTGTGAATTTACGCGCGCGCATATGCACGCATGCTTCCATGCG
CCCTTCGGTTTTCCAACTGCTGAGGCAATTCATGTTTCTATGGTTTTATC
GCGACGCAAGGCTGTGCAACGTTCTTCGGCGCACGTTGGCAGGTTTGTGT
GCCCTTGATAACGGGTGGGTGACTGACCTCCACGCCATTTTTTATTTTTG
TGCGAAATAAACAGACGCTATGTAGCGTGGGGGGGTCTGTGTCCAACCTG
GGAACAAAAAAGACGCGTTCCCCAGGGGAACTGTCATTTTCTGGTGTTTT
AGTGGTGTATAATACATACATGTATGATGATTTCCCCGCAACTGAGGTTG
GTGGCCTCGAAACGAAACGAAACGAAACGAAACGCACCGATTTTTGTCTG
AAACCCCGTCAGGCGGCGGCACGGCGCGCGCACGGTACCCCTGGTGGCCC
TGCTGCTGCTGGCGGCGTGGCTGACCGTGCTGGCGGCGGCGCTGTGCCTC
GTGGTCCTCCCTTTCTTGCTGGGCCGGCTCGTGTTCTCGCTGGCCCACCT
GCCGACCCACTGGACGCACGACACGGCCAGCTTCGCCGTCGGGCTCACGC
TCCTCAAGG

Coding sequence (CDS) from alignment at L-elsbetiae_contig14684:1695..3653+

>mRNA_L-elsbetiae_contig14684.3407.1 ID=mRNA_L-elsbetiae_contig14684.3407.1|Name=mRNA_L-elsbetiae_contig14684.3407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig14684:1695..3653+ (Laminarionema elsbetiae ELsaHSoW15)
GTCAGCCACCATGGTGACGGCGGCGGCGGTGGCGGTGGCTGCAGACAGTG
GGGCGCGGCCGTAAAGGCCTGGTGGGACGGAGGAGAAGCGGGCAAGGACG
AGGAGGTCAGCCACCATGGTGACGGCGGCGGCGGTGGCGGTGGCTGCAGA
CAGTGGGGCGCGGCCGTAAAGGCCTGGTGGGACGGAGGAGAAGCGGGCAA
GGACGAGGAGGAGGGTATCATCGTTGGGCCTCCGCTGCGGCGCCCCCCTC
CCGGCTGGGATGACCCGGCGGGGGTGGCGCAAGGGAGGTGGGCGTGGGGC
ACGGAGCCCCCTGGCGAGGTGCAGCTCAACCTGGCCCCGAGGAGGGTATC
ATCGTTGGGCCTCCGCTGCGGCGCCCCCCTCCCGGCTGGGATGACCCGGC
GGGGGTGGCGCAAGGGAGGTGGGCGTGGGGCACGGAGCCCCCTGGCGAGG
TGCAGCTCAACCTGGCCCCGAGGCGGCGGCACGGCGCGCGCACGGTACCC
CTGGTGGCCCTGCTGCTGCTGGCGGCGTGGCTGACCGTGCTGGCGGCGGC
GCTGTGCCTCGTGGTCCTCCCTTTCTTGCTGGGCCGGCTCGTGTTCTCGC
TGGCCCACCTGCCGACCCACTGGACGCACGACACGGCCAGCTTCGCCGTC
GGGCTCACGCTCCTCAAGGCGGCGGCACGGCGCGCGCACGGTACCCCTGG
TGGCCCTGCTGCTGCTGGCGGCGTGGCTGACCGTGCTGGCGGCGGCGCTG
TGCCTCGTGGTCCTCCCTTTCTTGCTGGGCCGGCTCGTGTTCTCGCTGGC
CCACCTGCCGACCCACTGGACGCACGACACGGCCAGCTTCGCCGTCGGGC
TCACGCTCCTCAAG