mRNA_L-elsbetiae_contig14599.3352.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14599.3352.1
Unique NamemRNA_L-elsbetiae_contig14599.3352.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14599.3352.1 vs. uniprot
Match: D7G9A2_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A2_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.240e-7
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 3 
Query:   24 IIGGSVWRMLAFPWYHFVPAIVLAVGNFCLNISSIIH 134
            I GG VWRM    WYHFVPA+V AVG F LN+S++++
Sbjct: 1128 IFGGCVWRMTMLTWYHFVPAMVFAVGTFALNMSTLVY 1164
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BLAST of mRNA_L-elsbetiae_contig14599.3352.1 vs. uniprot
Match: A0A6H5K7X7_9PHAE (GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 5.720e-7
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 3 
Query:   24 IIGGSVWRMLAFPWYHFVPAIVLAVGNFCLNISSIIH 134
            I GG  WRM    WYHFVPA+V AVG F LN+S++I+
Sbjct: 1230 IFGGCAWRMTMLTWYHFVPAMVFAVGTFALNMSTLIY 1266
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BLAST of mRNA_L-elsbetiae_contig14599.3352.1 vs. uniprot
Match: D7FP53_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP53_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.690e-6
Identity = 21/43 (48.84%), Postives = 32/43 (74.42%), Query Frame = 3 
Query:    3 TTAVTVGIIGGSVWRMLAFPWYHFVPAIVLAVGNFCLNISSII 131
            T   T+  +GG+ WR+  FPWYHFVP I+L++ NF L+IS+++
Sbjct: 1173 TMMYTLLTVGGAAWRVTDFPWYHFVPTILLSILNFGLHISTLL 1215
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14599.3352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G9A2_ECTSI2.240e-759.46Cellulose synthase (UDP-forming), family GT2 n=1 T... [more]
A0A6H5K7X7_9PHAE5.720e-759.46GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FP53_ECTSI2.690e-648.84Cellulose synthase (UDP-forming), family GT2 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14599contigL-elsbetiae_contig14599:2016..3241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size365
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14599.3352.1prot_L-elsbetiae_contig14599.3352.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14599 2056..3114 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.2576504-UTR-L-elsbetiae_contig14599:2015..20551622815586.2576504-UTR-L-elsbetiae_contig14599:2015..2055Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14599 2016..2055 +
1691682975.2515347-UTR-L-elsbetiae_contig14599:2015..20551691682975.2515347-UTR-L-elsbetiae_contig14599:2015..2055Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14599 2016..2055 +
1622815586.293709-UTR-L-elsbetiae_contig14599:3114..32411622815586.293709-UTR-L-elsbetiae_contig14599:3114..3241Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14599 3115..3241 +
1691682975.2832558-UTR-L-elsbetiae_contig14599:3114..32411691682975.2832558-UTR-L-elsbetiae_contig14599:3114..3241Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14599 3115..3241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.273058-CDS-L-elsbetiae_contig14599:2055..20611622815586.273058-CDS-L-elsbetiae_contig14599:2055..2061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14599 2056..2061 +
1691682975.2649608-CDS-L-elsbetiae_contig14599:2055..20611691682975.2649608-CDS-L-elsbetiae_contig14599:2055..2061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14599 2056..2061 +
1622815586.2831314-CDS-L-elsbetiae_contig14599:2922..31141622815586.2831314-CDS-L-elsbetiae_contig14599:2922..3114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14599 2923..3114 +
1691682975.2742505-CDS-L-elsbetiae_contig14599:2922..31141691682975.2742505-CDS-L-elsbetiae_contig14599:2922..3114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14599 2923..3114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14599.3352.1

>prot_L-elsbetiae_contig14599.3352.1 ID=prot_L-elsbetiae_contig14599.3352.1|Name=mRNA_L-elsbetiae_contig14599.3352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
MEDAGIPLVPLRPRDRPGGWKLLPQYQQHHSLMICTLGNRREPREASKQN
RGWLTPVVWGRLYRM*
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mRNA from alignment at L-elsbetiae_contig14599:2016..3241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14599.3352.1 ID=mRNA_L-elsbetiae_contig14599.3352.1|Name=mRNA_L-elsbetiae_contig14599.3352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1226bp|location=Sequence derived from alignment at L-elsbetiae_contig14599:2016..3241+ (Laminarionema elsbetiae ELsaHSoW15)
GGACAACTGCTGTCACTGTTGGTATCATCGGGGGGTCCGTATGGAGGTGC
GGATGATCTCACGATGAAGCGGGTTGTTGTTGTTGTTGTTGTTACTGTTG
TTGTTGTTGTTGTTGTTGTTGTCGTCGTGGTTGTTGTTGGTATTACGGGT
GCCTGTGCCAAACGAAGATTGCTCCTCGCGCTGATGGATCGTCGTCGACG
AACTGGACCAACTTTCGAAAAAAAAAAACAGTCCCGTAGTTTTGAACAAG
TGAAAAAGCGACGACGAAGAGCGCACTCTGTAATCAAGTCTAAAACACGG
ACGAATTTGTGCGCGTTTTAATTAGTAAGATGTCTGATGCGTGCACAATT
ATGCACAATGTTACACCTTCGATCCGTTCCAGCATCGTTCTCTCGCGTGC
ACCTTAATCCTTACCGTGCCGACCTGTCGGTCTCTACAATAGTAGTAGTA
AATAGTAGTACCGATTTCAAAGACACATGTTGTTCCTACTTAGTCGCAGG
CAGACACAGCAGCGAATACCTTACTTACCAACGTTGGATACACTTGTAGC
AGGTGTCGCGCCTACGAGTTCCTTCAGGTCCGCCGCATGTGGGCGATTTG
CCGCACTCGAACCCAAAAAGGTTCCAGCTATTTCTTGTTATTTAGTTGGA
ACATGTTGTTTTCTCCGGGGCTGTTTATTTCGCATGGTGGGAGACAAAAC
ATATTTTTTTCCCGCACTGCCCGGCAACCTTGAGGGTGCGCCGTTTTATG
CGTTTCGTGAGGAGCGTCTGCAAAGTGCGGCGGCACGCTCCTACACATCT
TGAATCTTCTTCCTCAATTTTGTTCGCGCAAAAAAACAGCAACAATTTGA
AAAAACACACCACAACTTGTCTCCATTTTGTGCGGTCTTCACAAAACTCG
CACGCAGGATGCTGGCATTCCCCTGGTACCACTTCGTCCCCGCGATCGTC
CTGGCGGTTGGAAACTTCTGCCTCAATATCAGCAGCATCATTCACTGATG
ATATGCACCCTGGGAAACCGTAGGGAGCCGAGGGAGGCCTCCAAGCAAAA
CCGTGGCTGGCTGACTCCCGTGGTTTGGGGTCGACTATACCGTATGTAGC
TTTCCGGGTCTATCTAATGTAGAGAAGGCGGGTTGGATCATCGGCACTAG
ACTAACAGTGTAATATAGTAATATACTTCAGGGTGCCGATCGTCGACGGC
GATTGAGAACAGATTGTCATGCGGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14599:2016..3241+

>mRNA_L-elsbetiae_contig14599.3352.1 ID=mRNA_L-elsbetiae_contig14599.3352.1|Name=mRNA_L-elsbetiae_contig14599.3352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig14599:2016..3241+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGATGGAGGATGCTGGCATTCCCCTGGTACCACTTCGTCCCCGCGA
TCGTCCTGGCGGTTGGAAACTTCTGCCTCAATATCAGCAGCATCATTCAC
TGATGATATGCACCCTGGGAAACCGTAGGGAGCCGAGGGAGGCCTCCAAG
CAAAACCGTGGCTGGCTGACTCCCGTGGTTTGGGGTCGACTATACCGTAT
GTAGGATGCTGGCATTCCCCTGGTACCACTTCGTCCCCGCGATCGTCCTG
GCGGTTGGAAACTTCTGCCTCAATATCAGCAGCATCATTCACTGATGATA
TGCACCCTGGGAAACCGTAGGGAGCCGAGGGAGGCCTCCAAGCAAAACCG
TGGCTGGCTGACTCCCGTGGTTTGGGGTCGACTATACCGTATGTAG
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